Wall clock time and date at job start Tue Mar 31 2020 01:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47413 * 2 1 4 4 O 1.42903 * 109.47302 * 239.99474 * 2 1 3 5 5 C 1.52999 * 109.47094 * 119.99688 * 2 1 3 6 6 H 1.08994 * 109.47681 * 179.97438 * 5 2 1 7 7 O 1.42898 * 109.47378 * 300.00239 * 5 2 1 8 8 C 1.50708 * 109.47043 * 60.00034 * 5 2 1 9 9 O 1.21280 * 119.99671 * 245.00250 * 8 5 2 10 10 N 1.34773 * 119.99918 * 65.00163 * 8 5 2 11 11 C 1.39267 * 119.99500 * 185.60854 * 10 8 5 12 12 C 1.39664 * 119.57974 * 18.86532 * 11 10 8 13 13 C 1.38656 * 119.49651 * 180.02562 * 12 11 10 14 14 C 1.38346 * 118.67090 * 0.02562 * 13 12 11 15 15 C 1.40577 * 119.12825 * 0.02562 * 14 13 12 16 16 C 1.41338 * 119.78671 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99878 * 7.19695 * 16 15 14 18 18 C 1.40026 * 120.00003 * 187.19646 * 16 15 14 19 19 N 1.30747 * 119.99857 * 7.23058 * 18 16 15 20 20 Si 1.86796 * 120.00117 * 187.23606 * 18 16 15 21 21 H 1.48508 * 109.46989 * 265.00926 * 20 18 16 22 22 H 1.48502 * 109.47416 * 25.00501 * 20 18 16 23 23 H 1.48493 * 109.47429 * 145.00748 * 20 18 16 24 24 N 1.31915 * 119.57044 * 199.16689 * 11 10 8 25 25 H 1.08997 * 109.47108 * 300.00775 * 1 2 3 26 26 H 1.09005 * 109.46837 * 60.00118 * 1 2 3 27 27 H 1.09000 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46870 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46507 * 299.99757 * 3 2 1 30 30 H 1.08993 * 109.47143 * 59.99469 * 3 2 1 31 31 H 0.96698 * 113.99772 * 60.00224 * 4 2 1 32 32 H 0.96704 * 114.00150 * 59.99020 * 7 5 2 33 33 H 0.96993 * 120.00211 * 5.59901 * 10 8 5 34 34 H 1.07998 * 120.25461 * 0.04880 * 12 11 10 35 35 H 1.08002 * 120.66498 * 179.97438 * 13 12 11 36 36 H 1.07997 * 120.43146 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99859 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 3.1299 -0.7216 1.2491 7 8 1.5636 -0.0476 2.4160 8 6 1.5376 -2.1421 1.2493 9 8 0.7674 -2.5129 2.1097 10 7 1.9442 -3.0006 0.2933 11 6 1.3921 -4.2772 0.2234 12 6 0.1750 -4.5376 0.8571 13 6 -0.3728 -5.8095 0.7869 14 6 0.3092 -6.7882 0.0862 15 6 1.5308 -6.4638 -0.5290 16 6 2.2390 -7.4528 -1.2488 17 1 1.7893 -8.4189 -1.4240 18 6 3.5235 -7.1799 -1.7347 19 7 4.1246 -6.0668 -1.4043 20 14 4.3784 -8.4061 -2.8549 21 1 5.2569 -9.2879 -2.0448 22 1 3.3605 -9.2301 -3.5552 23 1 5.1973 -7.6755 -3.8552 24 7 2.0285 -5.2265 -0.4354 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.7211 -0.2703 -1.9979 32 1 0.5996 -0.0093 2.4821 33 1 2.6212 -2.7293 -0.3461 34 1 -0.3358 -3.7543 1.3973 35 1 -1.3127 -6.0318 1.2702 36 1 -0.0917 -7.7883 0.0130 37 1 5.0144 -5.8776 -1.7413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153245671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:55 Heat of formation + Delta-G solvation = -119.980923 kcal Electronic energy + Delta-G solvation = -22430.616648 eV Core-core repulsion = 18979.225059 eV Total energy + Delta-G solvation = -3451.391589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86727 -40.09119 -38.86190 -37.18882 -35.91123 -35.08322 -32.80346 -32.34964 -31.32154 -28.72262 -28.35760 -27.25606 -23.83649 -23.50250 -22.12864 -21.21024 -19.49851 -19.17242 -18.16378 -17.79532 -17.57827 -16.74622 -16.61318 -16.30918 -16.12720 -15.38015 -15.32309 -14.77619 -14.64535 -14.37367 -14.06918 -13.83816 -13.59358 -13.17713 -12.97417 -12.92572 -12.76230 -12.70109 -12.62227 -12.58853 -12.44089 -11.88472 -11.61372 -11.52305 -11.07345 -11.01664 -10.37592 -10.01557 -9.63126 -8.97730 -8.36447 -6.51067 0.67666 1.07142 1.42588 1.50110 1.57466 1.69580 2.00720 2.24365 2.83376 2.88168 3.30205 3.56260 3.64902 3.83734 3.91306 4.07574 4.31386 4.39254 4.63849 4.65557 4.71001 4.85852 4.87204 4.91887 4.96627 5.02186 5.14300 5.23632 5.33173 5.60352 5.66478 5.90491 6.04456 6.25786 6.34464 6.54831 6.77189 6.80414 6.92041 7.18862 8.09090 8.44179 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.005058 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.900463 B = 5534.767258 C = 6301.370728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.110 3.890 3 C -0.163 4.163 4 O -0.571 6.571 5 C 0.116 3.884 6 H 0.138 0.862 7 O -0.528 6.528 8 C 0.487 3.513 9 O -0.553 6.553 10 N -0.625 5.625 11 C 0.347 3.653 12 C -0.328 4.328 13 C -0.049 4.049 14 C -0.309 4.309 15 C 0.246 3.754 16 C -0.468 4.468 17 H 0.092 0.908 18 C 0.028 3.972 19 N -0.757 5.757 20 Si 0.990 3.010 21 H -0.264 1.264 22 H -0.255 1.255 23 H -0.267 1.267 24 N -0.535 5.535 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.401 0.599 32 H 0.391 0.609 33 H 0.418 0.582 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 14.448 -1.720 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.069 3.931 3 C -0.220 4.220 4 O -0.381 6.381 5 C 0.053 3.947 6 H 0.156 0.844 7 O -0.335 6.335 8 C 0.275 3.725 9 O -0.431 6.431 10 N -0.271 5.271 11 C 0.111 3.889 12 C -0.353 4.353 13 C -0.073 4.073 14 C -0.332 4.332 15 C 0.120 3.880 16 C -0.500 4.500 17 H 0.110 0.890 18 C -0.194 4.194 19 N -0.379 5.379 20 Si 0.810 3.190 21 H -0.189 1.189 22 H -0.179 1.179 23 H -0.191 1.191 24 N -0.255 5.255 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.252 0.748 32 H 0.242 0.758 33 H 0.256 0.744 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.741 14.264 -0.960 14.316 hybrid contribution -1.000 -0.581 -0.664 1.333 sum -1.741 13.683 -1.624 13.888 Atomic orbital electron populations 1.22573 0.94909 1.01918 1.04999 1.21630 0.93563 0.93029 0.84899 1.22335 1.02357 0.93048 1.04257 1.86444 1.77190 1.57931 1.16581 1.21670 1.01334 0.84806 0.86894 0.84447 1.86605 1.29052 1.76459 1.41351 1.22178 0.81069 0.89447 0.79793 1.90588 1.36483 1.78530 1.37524 1.43237 1.41279 1.10500 1.32091 1.18935 0.89375 0.86352 0.94195 1.21802 0.99478 0.99610 1.14412 1.21181 0.98256 0.92572 0.95304 1.21894 1.00970 1.00131 1.10185 1.18707 0.89963 0.89202 0.90136 1.19943 1.00282 0.99478 1.30257 0.88959 1.26974 0.97691 0.97694 0.97024 1.70149 1.11968 1.22829 1.32922 0.85093 0.78252 0.77948 0.77747 1.18862 1.17896 1.19136 1.68036 1.32851 1.00628 1.23991 0.89638 0.89106 0.94724 0.91525 0.89854 0.90216 0.74778 0.75790 0.74379 0.84906 0.85116 0.86822 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 8.26 71.98 0.59 -2.94 16 2 C 0.11 2.17 0.92 -10.79 -0.01 2.16 16 3 C -0.16 -2.21 8.67 71.98 0.62 -1.58 16 4 O -0.57 -12.50 10.91 -148.98 -1.63 -14.13 16 5 C 0.12 3.06 2.97 29.85 0.09 3.15 16 6 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 7 O -0.53 -12.94 12.28 -129.99 -1.60 -14.53 16 8 C 0.49 18.29 5.72 87.66 0.50 18.79 16 9 O -0.55 -24.05 13.13 15.96 0.21 -23.84 16 10 N -0.62 -26.70 4.91 -308.36 -1.51 -28.21 16 11 C 0.35 18.13 7.51 133.25 1.00 19.13 16 12 C -0.33 -16.65 8.83 22.71 0.20 -16.44 16 13 C -0.05 -2.37 10.15 22.40 0.23 -2.14 16 14 C -0.31 -16.11 9.83 22.87 0.22 -15.89 16 15 C 0.25 14.19 6.52 40.19 0.26 14.45 16 16 C -0.47 -25.80 9.13 23.47 0.21 -25.58 16 17 H 0.09 4.73 7.86 -2.91 -0.02 4.71 16 18 C 0.03 1.44 5.47 85.29 0.47 1.90 16 19 N -0.76 -40.68 11.56 21.84 0.25 -40.43 16 20 Si 0.99 38.01 29.57 68.60 2.03 40.04 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 24 N -0.54 -30.78 8.00 -186.36 -1.49 -32.27 16 25 H 0.08 1.31 6.78 -2.39 -0.02 1.29 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.03 0.92 7.22 -2.39 -0.02 0.91 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.02 7.68 -2.39 -0.02 1.00 16 31 H 0.40 5.47 9.05 -74.06 -0.67 4.80 16 32 H 0.39 7.94 7.08 -74.05 -0.52 7.41 16 33 H 0.42 16.95 7.45 -92.71 -0.69 16.26 16 34 H 0.13 6.55 5.34 -3.13 -0.02 6.54 16 35 H 0.13 5.31 8.06 -2.91 -0.02 5.29 16 36 H 0.11 5.39 8.06 -2.91 -0.02 5.37 16 37 H 0.28 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -72.47 311.06 -0.09 -72.56 By element: Atomic # 1 Polarization: 46.58 SS G_CDS: -0.75 Total: 45.83 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 4.39 Total: -5.01 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -2.75 Total: -100.91 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -3.01 Total: -52.50 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -72.47 -0.09 -72.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153245671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.424 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds