Wall clock time and date at job start Tue Mar 31 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47500 * 2 1 4 4 C 1.34790 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.21552 * 120.00018 * 359.97438 * 4 3 2 6 6 C 1.47130 * 120.00271 * 179.97438 * 4 3 2 7 7 C 1.39708 * 120.53317 * 359.97438 * 6 4 3 8 8 N 1.31502 * 120.69447 * 179.97438 * 7 6 4 9 9 C 1.32856 * 121.95680 * 0.02562 * 8 7 6 10 10 N 1.38421 * 119.49611 * 180.02562 * 9 8 7 11 11 C 1.36851 * 120.00255 * 186.02866 * 10 9 8 12 12 H 1.08001 * 119.99944 * 354.85592 * 11 10 9 13 13 C 1.38884 * 120.00183 * 174.59004 * 11 10 9 14 14 N 1.31507 * 119.99795 * 0.26888 * 13 11 10 15 15 Si 1.86793 * 120.00312 * 180.27174 * 13 11 10 16 16 H 1.48500 * 109.47397 * 59.99458 * 15 13 11 17 17 H 1.48501 * 109.47533 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47040 * 299.99800 * 15 13 11 19 19 C 1.39061 * 121.01225 * 0.27322 * 9 8 7 20 20 C 1.38717 * 119.18144 * 359.43601 * 19 9 8 21 21 O 1.35522 * 120.88710 * 180.25716 * 20 19 9 22 22 C 1.42906 * 117.00201 * 0.29604 * 21 20 19 23 23 C 1.52993 * 109.47083 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47027 * 300.00556 * 1 2 3 25 25 H 1.09007 * 109.46915 * 59.99826 * 1 2 3 26 26 H 1.08998 * 109.47621 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47027 * 239.99444 * 2 1 3 28 28 H 1.09007 * 109.46915 * 120.00174 * 2 1 3 29 29 H 1.07997 * 119.65851 * 359.97438 * 7 6 4 30 30 H 0.97002 * 119.99313 * 6.01572 * 10 9 8 31 31 H 0.97001 * 119.99908 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.40806 * 179.72535 * 19 9 8 33 33 H 1.08992 * 109.47072 * 300.00286 * 22 21 20 34 34 H 1.09000 * 109.46569 * 59.99629 * 22 21 20 35 35 H 1.08992 * 109.47655 * 300.00241 * 23 22 21 36 36 H 1.09007 * 109.46812 * 60.00662 * 23 22 21 37 37 H 1.09007 * 109.46893 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3504 1.5454 0.0005 5 8 4.0908 0.5814 0.0015 6 6 3.9129 2.9049 0.0000 7 6 3.0723 4.0209 -0.0016 8 7 3.5716 5.2374 -0.0016 9 6 4.8814 5.4599 -0.0006 10 7 5.3515 6.7618 0.0000 11 6 6.6926 7.0052 -0.1235 12 1 7.3917 6.1821 -0.1377 13 6 7.1541 8.3102 -0.2360 14 7 6.3028 9.3125 -0.2187 15 14 8.9838 8.6420 -0.4121 16 1 9.4923 7.9748 -1.6374 17 1 9.2141 10.1055 -0.5142 18 1 9.7000 8.1094 0.7749 19 6 5.7874 4.4049 -0.0051 20 6 5.3092 3.1028 0.0011 21 8 6.1611 2.0488 0.0021 22 6 7.5592 2.3446 0.0031 23 6 8.3568 1.0390 0.0048 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0011 3.8830 -0.0029 30 1 4.7303 7.5017 0.0876 31 1 6.6251 10.2240 -0.2976 32 1 6.8501 4.5970 -0.0087 33 1 7.8090 2.9223 -0.8868 34 1 7.8075 2.9229 0.8931 35 1 8.1069 0.4617 0.8949 36 1 8.1085 0.4605 -0.8850 37 1 9.4232 1.2647 0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:16 Heat of formation + Delta-G solvation = -96.449331 kcal Electronic energy + Delta-G solvation = -21622.105607 eV Core-core repulsion = 18171.734425 eV Total energy + Delta-G solvation = -3450.371182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.09730 -39.10092 -37.81327 -35.85663 -35.42755 -32.43292 -31.70186 -31.50276 -29.87181 -28.99200 -25.62128 -23.85170 -23.34268 -22.17115 -21.60695 -20.36054 -18.42531 -17.97604 -16.97585 -16.22765 -16.07525 -15.63468 -15.55523 -15.31487 -14.60264 -14.03945 -13.84458 -13.78271 -13.25613 -13.12688 -12.83545 -12.69040 -12.45706 -12.36581 -12.06915 -11.69263 -11.67338 -11.47922 -11.38484 -10.94449 -10.72524 -10.67347 -10.62941 -10.32484 -10.13721 -9.74960 -9.06193 -8.56637 -8.15271 -7.32273 -6.98091 -4.16138 1.69342 2.37995 2.93719 2.96165 2.98402 3.26749 3.44846 3.64386 3.72516 4.49352 4.63747 5.01412 5.07123 5.12139 5.21105 5.25368 5.36197 5.45736 5.51474 5.53341 5.66577 5.87164 5.90843 5.96429 6.02496 6.04493 6.17881 6.22843 6.38489 6.65504 6.70189 6.95998 7.06777 7.23180 7.48782 7.98654 8.25758 8.58233 8.67421 8.94106 9.36882 10.15879 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.004593 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.512233 B = 6094.613972 C = 7427.179614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.365 6.365 4 C 0.523 3.477 5 O -0.528 6.528 6 C -0.344 4.344 7 C 0.248 3.752 8 N -0.585 5.585 9 C 0.380 3.620 10 N -0.494 5.494 11 C -0.305 4.305 12 H 0.110 0.890 13 C 0.031 3.969 14 N -0.864 5.864 15 Si 0.941 3.059 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.358 4.358 20 C 0.259 3.741 21 O -0.288 6.288 22 C 0.049 3.951 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.408 0.592 31 H 0.285 0.715 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 -10.548 0.320 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.284 6.284 4 C 0.372 3.628 5 O -0.418 6.418 6 C -0.355 4.355 7 C 0.075 3.925 8 N -0.306 5.306 9 C 0.136 3.864 10 N -0.093 5.093 11 C -0.436 4.436 12 H 0.127 0.873 13 C -0.177 4.177 14 N -0.497 5.497 15 Si 0.765 3.235 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.386 4.386 20 C 0.206 3.794 21 O -0.198 6.198 22 C -0.026 4.026 23 C -0.204 4.204 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.174 0.826 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.064 -9.808 0.289 10.027 hybrid contribution 1.323 -0.038 -0.055 1.324 sum -0.742 -9.846 0.234 9.877 Atomic orbital electron populations 1.21785 0.93284 1.02344 1.03387 1.22801 0.94671 0.81459 1.01975 1.86543 1.25276 1.30879 1.85676 1.20729 0.79464 0.89820 0.72803 1.90786 1.59902 1.42487 1.48621 1.18499 0.90392 0.91084 1.35536 1.22277 0.98579 0.85338 0.86285 1.67086 1.12941 1.24258 1.26303 1.17965 0.87974 0.85725 0.94770 1.40961 1.08288 1.03340 1.56749 1.19874 0.82210 0.93919 1.47569 0.87291 1.25540 1.01629 0.94799 0.95745 1.69665 1.35940 1.00393 1.43697 0.85744 0.80047 0.78078 0.79616 1.19144 1.20196 1.19152 1.20867 1.00616 0.90300 1.26821 1.18727 0.88011 0.85871 0.86824 1.86196 1.16068 1.30880 1.86687 1.22781 0.79678 0.98480 1.01707 1.21721 0.98620 0.96726 1.03330 0.91609 0.91610 0.90851 0.91890 0.91892 0.82606 0.75575 0.90499 0.84892 0.91983 0.92022 0.91758 0.91756 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.07 0.86 6.20 37.16 0.23 1.09 16 3 O -0.37 -6.11 9.48 -40.74 -0.39 -6.50 16 4 C 0.52 10.41 7.89 34.34 0.27 10.68 16 5 O -0.53 -11.54 15.07 -26.47 -0.40 -11.94 16 6 C -0.34 -7.12 5.90 -104.68 -0.62 -7.74 16 7 C 0.25 4.89 10.78 -17.14 -0.18 4.71 16 8 N -0.58 -12.89 10.37 -12.18 -0.13 -13.02 16 9 C 0.38 8.79 7.59 -155.22 -1.18 7.61 16 10 N -0.49 -11.88 5.42 -11.22 -0.06 -11.94 16 11 C -0.31 -7.29 9.53 -15.07 -0.14 -7.44 16 12 H 0.11 2.46 5.64 -52.49 -0.30 2.16 16 13 C 0.03 0.73 5.50 -17.45 -0.10 0.63 16 14 N -0.86 -21.30 13.06 55.49 0.72 -20.57 16 15 Si 0.94 17.99 29.55 -169.99 -5.02 12.96 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 17 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 19 C -0.36 -7.80 8.31 -39.10 -0.32 -8.12 16 20 C 0.26 5.52 6.74 -38.35 -0.26 5.26 16 21 O -0.29 -5.79 8.35 -39.58 -0.33 -6.12 16 22 C 0.05 0.78 5.48 37.15 0.20 0.98 16 23 C -0.15 -1.87 10.28 37.15 0.38 -1.48 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.16 2.57 7.61 -52.49 -0.40 2.17 16 30 H 0.41 10.05 8.03 -40.82 -0.33 9.73 16 31 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.13 2.76 4.31 -52.49 -0.23 2.53 16 33 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 34 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -28.29 321.55 -6.66 -34.94 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -4.57 Total: 12.22 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.33 Total: 5.12 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.54 Total: -45.53 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.12 Total: -24.56 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.29 -6.66 -34.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.505 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds