Wall clock time and date at job start Tue Mar 31 2020 02:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47500 * 2 1 4 4 C 1.34790 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.21552 * 120.00018 * 359.97438 * 4 3 2 6 6 C 1.47130 * 120.00271 * 179.97438 * 4 3 2 7 7 C 1.39708 * 120.53317 * 359.97438 * 6 4 3 8 8 N 1.31502 * 120.69447 * 179.97438 * 7 6 4 9 9 C 1.32856 * 121.95680 * 0.02562 * 8 7 6 10 10 N 1.38421 * 119.49611 * 180.02562 * 9 8 7 11 11 C 1.36851 * 120.00255 * 186.02866 * 10 9 8 12 12 H 1.08001 * 119.99944 * 354.85592 * 11 10 9 13 13 C 1.38884 * 120.00183 * 174.59004 * 11 10 9 14 14 N 1.31507 * 119.99795 * 0.26888 * 13 11 10 15 15 Si 1.86793 * 120.00312 * 180.27174 * 13 11 10 16 16 H 1.48500 * 109.47397 * 59.99458 * 15 13 11 17 17 H 1.48501 * 109.47533 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47040 * 299.99800 * 15 13 11 19 19 C 1.39061 * 121.01225 * 0.27322 * 9 8 7 20 20 C 1.38717 * 119.18144 * 359.43601 * 19 9 8 21 21 O 1.35522 * 120.88710 * 180.25716 * 20 19 9 22 22 C 1.42906 * 117.00201 * 0.29604 * 21 20 19 23 23 C 1.52993 * 109.47083 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47027 * 300.00556 * 1 2 3 25 25 H 1.09007 * 109.46915 * 59.99826 * 1 2 3 26 26 H 1.08998 * 109.47621 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47027 * 239.99444 * 2 1 3 28 28 H 1.09007 * 109.46915 * 120.00174 * 2 1 3 29 29 H 1.07997 * 119.65851 * 359.97438 * 7 6 4 30 30 H 0.97002 * 119.99313 * 6.01572 * 10 9 8 31 31 H 0.97001 * 119.99908 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.40806 * 179.72535 * 19 9 8 33 33 H 1.08992 * 109.47072 * 300.00286 * 22 21 20 34 34 H 1.09000 * 109.46569 * 59.99629 * 22 21 20 35 35 H 1.08992 * 109.47655 * 300.00241 * 23 22 21 36 36 H 1.09007 * 109.46812 * 60.00662 * 23 22 21 37 37 H 1.09007 * 109.46893 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3504 1.5454 0.0005 5 8 4.0908 0.5814 0.0015 6 6 3.9129 2.9049 0.0000 7 6 3.0723 4.0209 -0.0016 8 7 3.5716 5.2374 -0.0016 9 6 4.8814 5.4599 -0.0006 10 7 5.3515 6.7618 0.0000 11 6 6.6926 7.0052 -0.1235 12 1 7.3917 6.1821 -0.1377 13 6 7.1541 8.3102 -0.2360 14 7 6.3028 9.3125 -0.2187 15 14 8.9838 8.6420 -0.4121 16 1 9.4923 7.9748 -1.6374 17 1 9.2141 10.1055 -0.5142 18 1 9.7000 8.1094 0.7749 19 6 5.7874 4.4049 -0.0051 20 6 5.3092 3.1028 0.0011 21 8 6.1611 2.0488 0.0021 22 6 7.5592 2.3446 0.0031 23 6 8.3568 1.0390 0.0048 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0011 3.8830 -0.0029 30 1 4.7303 7.5017 0.0876 31 1 6.6251 10.2240 -0.2976 32 1 6.8501 4.5970 -0.0087 33 1 7.8090 2.9223 -0.8868 34 1 7.8075 2.9229 0.8931 35 1 8.1069 0.4617 0.8949 36 1 8.1085 0.4605 -0.8850 37 1 9.4232 1.2647 0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:15 Heat of formation + Delta-G solvation = -112.022570 kcal Electronic energy + Delta-G solvation = -21622.780914 eV Core-core repulsion = 18171.734425 eV Total energy + Delta-G solvation = -3451.046489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69625 -40.61733 -39.41250 -37.35302 -37.10127 -34.12744 -33.08781 -32.56052 -31.37018 -30.62561 -27.34754 -25.18503 -24.80563 -23.44065 -23.08697 -21.88172 -20.11440 -19.59252 -18.51758 -17.79785 -17.42149 -17.20053 -16.97854 -16.85650 -16.22993 -15.64309 -15.34402 -15.22728 -14.71193 -14.60412 -14.24769 -13.80798 -13.76133 -13.49740 -13.37440 -13.14918 -13.07701 -12.75164 -12.55377 -12.39818 -12.19504 -12.15463 -12.13520 -11.77840 -11.36312 -11.34302 -10.77833 -10.26186 -9.79376 -9.06303 -8.70771 -5.98555 0.03931 0.70336 1.40700 1.44582 1.52535 1.83555 1.91515 2.14453 2.21088 2.78955 2.91725 3.29847 3.81778 4.03451 4.07349 4.11793 4.14425 4.17769 4.24502 4.37513 4.45229 4.49422 4.64325 4.83841 4.89837 4.92680 4.98182 5.02553 5.07883 5.20587 5.23238 5.30014 5.51893 5.62901 5.81498 6.40733 6.50699 6.91716 7.07113 7.17219 7.61944 8.45091 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.004593 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.512233 B = 6094.613972 C = 7427.179614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.528 3.472 5 O -0.549 6.549 6 C -0.352 4.352 7 C 0.256 3.744 8 N -0.602 5.602 9 C 0.376 3.624 10 N -0.514 5.514 11 C -0.329 4.329 12 H 0.116 0.884 13 C -0.011 4.011 14 N -0.903 5.903 15 Si 1.006 2.994 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.259 1.259 19 C -0.366 4.366 20 C 0.256 3.744 21 O -0.301 6.301 22 C 0.038 3.962 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.190 0.810 30 H 0.399 0.601 31 H 0.286 0.714 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -12.189 0.272 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.279 6.279 4 C 0.377 3.623 5 O -0.442 6.442 6 C -0.363 4.363 7 C 0.085 3.915 8 N -0.324 5.324 9 C 0.132 3.868 10 N -0.114 5.114 11 C -0.458 4.458 12 H 0.134 0.866 13 C -0.215 4.215 14 N -0.538 5.538 15 Si 0.827 3.173 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.183 1.183 19 C -0.394 4.394 20 C 0.202 3.798 21 O -0.212 6.212 22 C -0.037 4.037 23 C -0.197 4.197 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.207 0.793 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.994 -11.508 0.243 11.682 hybrid contribution 1.125 0.190 -0.029 1.141 sum -0.869 -11.317 0.214 11.353 Atomic orbital electron populations 1.21809 0.90139 1.04290 1.03745 1.23213 0.97068 0.79492 1.02067 1.86526 1.23176 1.33326 1.84892 1.20563 0.80444 0.89056 0.72199 1.90772 1.60812 1.43036 1.49563 1.18855 0.90643 0.92171 1.34630 1.22791 0.99993 0.84308 0.84455 1.67162 1.12596 1.25358 1.27272 1.18301 0.88729 0.85863 0.93894 1.40991 1.08321 1.03264 1.58825 1.20188 0.82396 0.94609 1.48618 0.86642 1.26443 1.05710 0.94260 0.95059 1.69760 1.37760 1.00740 1.45512 0.84773 0.74909 0.77774 0.79824 1.18535 1.20133 1.18314 1.20932 1.00856 0.90286 1.27283 1.18926 0.88769 0.86014 0.86132 1.86201 1.17954 1.30762 1.86254 1.23147 0.77855 1.00598 1.02093 1.21749 0.99869 0.94920 1.03120 0.91232 0.91255 0.88101 0.91873 0.91852 0.79311 0.76587 0.90419 0.84320 0.91619 0.91594 0.91926 0.91958 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.29 71.98 0.74 -1.54 16 2 C 0.06 1.33 6.20 71.98 0.45 1.78 16 3 O -0.36 -11.39 9.48 -57.02 -0.54 -11.93 16 4 C 0.53 20.35 7.89 70.16 0.55 20.91 16 5 O -0.55 -23.49 15.07 26.51 0.40 -23.09 16 6 C -0.35 -14.28 5.90 -19.90 -0.12 -14.40 16 7 C 0.26 9.79 10.78 85.10 0.92 10.71 16 8 N -0.60 -26.48 10.37 -192.45 -2.00 -28.47 16 9 C 0.38 17.57 7.59 133.11 1.01 18.58 16 10 N -0.51 -25.36 5.42 -189.40 -1.03 -26.39 16 11 C -0.33 -15.97 9.53 84.06 0.80 -15.17 16 12 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 13 C -0.01 -0.52 5.50 84.90 0.47 -0.06 16 14 N -0.90 -45.62 13.06 21.66 0.28 -45.34 16 15 Si 1.01 36.72 29.55 68.60 2.03 38.75 16 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 17 H -0.28 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 C -0.37 -15.96 8.31 22.58 0.19 -15.77 16 20 C 0.26 10.80 6.74 23.07 0.16 10.95 16 21 O -0.30 -11.92 8.35 -67.86 -0.57 -12.49 16 22 C 0.04 1.15 5.48 71.98 0.39 1.55 16 23 C -0.14 -3.27 10.28 71.98 0.74 -2.53 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.19 5.81 7.61 -2.91 -0.02 5.79 16 30 H 0.40 20.48 8.03 -92.71 -0.74 19.74 16 31 H 0.29 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.14 5.77 4.31 -2.91 -0.01 5.76 16 33 H 0.07 1.95 7.69 -2.39 -0.02 1.93 16 34 H 0.07 1.95 7.72 -2.39 -0.02 1.93 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -61.16 321.55 5.24 -55.92 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: 0.36 Total: 38.04 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.30 Total: 15.00 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -2.74 Total: -100.20 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.71 Total: -47.51 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -61.16 5.24 -55.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.102 kcal (2) G-P(sol) polarization free energy of solvation -61.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds