Wall clock time and date at job start Tue Mar 31 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47316 * 2 1 4 4 C 1.48312 * 111.10154 * 70.75206 * 3 2 1 5 5 C 1.53934 * 86.18096 * 137.54149 * 4 3 2 6 6 C 1.47962 * 110.99871 * 169.99686 * 3 2 1 7 7 H 1.09002 * 113.76170 * 336.74155 * 6 3 2 8 8 C 1.50701 * 113.75769 * 107.99387 * 6 3 2 9 9 O 1.21285 * 119.99711 * 358.02152 * 8 6 3 10 10 N 1.34777 * 120.00237 * 178.01596 * 8 6 3 11 11 C 1.46497 * 119.99942 * 179.97438 * 10 8 6 12 12 H 1.08997 * 109.47665 * 325.00444 * 11 10 8 13 13 C 1.50704 * 109.46996 * 205.00246 * 11 10 8 14 14 H 1.08004 * 119.99820 * 0.02562 * 13 11 10 15 15 C 1.37873 * 119.99937 * 179.97438 * 13 11 10 16 16 N 1.31519 * 120.00042 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00144 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46923 * 90.00377 * 17 15 13 19 19 H 1.48499 * 109.47251 * 210.00700 * 17 15 13 20 20 H 1.48503 * 109.46718 * 330.00173 * 17 15 13 21 21 C 1.52999 * 109.47055 * 85.00651 * 11 10 8 22 22 F 1.39905 * 109.47224 * 59.99442 * 21 11 10 23 23 F 1.39901 * 109.47390 * 179.97438 * 21 11 10 24 24 F 1.39901 * 109.47062 * 299.99901 * 21 11 10 25 25 H 1.08996 * 109.47177 * 299.99596 * 1 2 3 26 26 H 1.09010 * 109.46858 * 59.99740 * 1 2 3 27 27 H 1.08995 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46755 * 240.00276 * 2 1 3 29 29 H 1.08995 * 109.47039 * 120.00677 * 2 1 3 30 30 H 1.08990 * 113.76260 * 23.22559 * 4 3 2 31 31 H 1.09005 * 113.85291 * 251.87200 * 4 3 2 32 32 H 1.09001 * 113.73304 * 221.91674 * 5 4 3 33 33 H 1.09009 * 113.82931 * 90.65079 * 5 4 3 34 34 H 0.96998 * 119.99481 * 0.02562 * 10 8 6 35 35 H 0.97002 * 119.99710 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7677 2.0404 1.3063 5 6 3.1872 2.6207 1.1727 6 6 3.4790 1.4314 0.2399 7 1 3.8673 0.5534 0.7562 8 6 4.2835 1.7996 -0.9800 9 8 3.7252 1.9896 -2.0398 10 7 5.6232 1.9178 -0.8934 11 6 6.4053 2.2753 -2.0795 12 1 5.9514 1.8262 -2.9629 13 6 7.8148 1.7650 -1.9243 14 1 8.0994 1.2278 -1.0316 15 6 8.7406 1.9830 -2.9224 16 7 8.3938 2.6367 -4.0097 17 14 10.4876 1.3499 -2.7305 18 1 10.5801 -0.0238 -3.2867 19 1 11.4212 2.2439 -3.4614 20 1 10.8501 1.3265 -1.2906 21 6 6.4282 3.7971 -2.2357 22 9 7.0107 4.3736 -1.1018 23 9 7.1754 4.1385 -3.3680 24 9 5.1197 4.2708 -2.3796 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6555 1.3407 2.1344 31 1 0.9806 2.7940 1.2768 32 1 3.7584 2.6008 2.1008 33 1 3.2220 3.5889 0.6731 34 1 6.0697 1.7655 -0.0458 35 1 9.0454 2.7904 -4.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156053190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:55 Heat of formation + Delta-G solvation = -138.630187 kcal Electronic energy + Delta-G solvation = -23364.498497 eV Core-core repulsion = 19370.441475 eV Total energy + Delta-G solvation = -3994.057022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.31896 -45.97237 -45.58590 -40.34997 -37.94832 -34.55447 -32.80849 -32.43500 -28.87088 -27.29819 -26.31239 -24.53185 -22.28608 -21.72742 -20.36869 -19.42098 -17.66354 -16.84087 -16.65739 -16.55495 -16.20946 -15.68994 -14.97198 -14.82810 -14.66629 -13.91543 -13.60019 -13.45007 -12.89056 -12.78595 -12.53942 -12.43217 -12.36812 -12.24864 -11.95002 -11.94875 -11.79058 -11.55031 -11.41696 -11.18174 -10.97149 -10.83921 -10.78240 -10.57549 -10.40056 -9.65723 -9.21762 -8.71470 -8.61438 -8.21624 -6.23147 -4.47190 3.17476 3.19743 3.25230 3.27697 3.53496 4.13537 4.25879 4.48085 4.58258 4.79566 4.93595 4.95404 5.07331 5.20027 5.27610 5.35836 5.50481 5.58353 5.71833 5.75692 5.86258 5.90081 5.92813 6.04203 6.14833 6.24325 6.36367 6.96059 7.03087 7.22720 7.48784 7.63736 8.37779 8.51298 8.97315 9.21010 10.68514 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.005291 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.098910 B = 5290.577358 C = 5644.245073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.016 3.984 3 N -0.449 5.449 4 C 0.001 3.999 5 C -0.129 4.129 6 C 0.009 3.991 7 H 0.098 0.902 8 C 0.518 3.482 9 O -0.515 6.515 10 N -0.713 5.713 11 C 0.246 3.754 12 H 0.084 0.916 13 C -0.552 4.552 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.417 3.583 22 F -0.210 7.210 23 F -0.137 7.137 24 F -0.217 7.217 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 -3.097 10.740 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 N -0.172 5.172 4 C -0.128 4.128 5 C -0.167 4.167 6 C -0.104 4.104 7 H 0.115 0.885 8 C 0.302 3.698 9 O -0.389 6.389 10 N -0.363 5.363 11 C 0.141 3.859 12 H 0.101 0.899 13 C -0.589 4.589 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.473 5.473 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.361 3.639 22 F -0.192 7.192 23 F -0.119 7.119 24 F -0.199 7.199 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.230 0.770 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.987 -2.597 9.120 13.065 hybrid contribution 1.460 -0.545 1.124 1.922 sum -7.527 -3.142 10.244 13.095 Atomic orbital electron populations 1.21690 0.94601 1.01428 1.02471 1.22624 0.96675 0.90777 1.01207 1.68556 1.04250 1.15032 1.29372 1.23928 0.98218 0.98948 0.91681 1.23281 0.96121 0.98497 0.98844 1.23465 0.91579 0.99992 0.95358 0.88466 1.20006 0.82464 0.77965 0.89412 1.90705 1.70326 1.48459 1.29432 1.46030 1.05995 1.70425 1.13866 1.19688 0.93710 0.85457 0.87078 0.89860 1.20872 0.92646 1.39538 1.05820 0.90500 1.25090 1.00093 0.94223 0.95030 1.70409 1.35283 1.34895 1.06681 0.86216 0.82387 0.78682 0.78561 1.20222 1.20793 1.19531 1.23130 0.71954 0.94690 0.74162 1.92984 1.85102 1.87470 1.53616 1.93402 1.74980 1.93469 1.50011 1.93076 1.39872 1.91183 1.95740 0.92921 0.91671 0.92401 0.90291 0.94442 0.91229 0.89076 0.90177 0.88452 0.76961 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.98 37.16 0.37 -1.12 16 2 C 0.02 0.19 5.54 -3.83 -0.02 0.17 16 3 N -0.45 -6.52 5.73 -230.97 -1.32 -7.84 16 4 C 0.00 0.01 7.13 -2.57 -0.02 -0.01 16 5 C -0.13 -1.59 7.84 -25.79 -0.20 -1.79 16 6 C 0.01 0.13 3.72 -67.81 -0.25 -0.12 16 7 H 0.10 1.18 7.79 -51.93 -0.40 0.78 16 8 C 0.52 10.35 6.95 -10.98 -0.08 10.27 16 9 O -0.52 -12.60 15.25 5.55 0.08 -12.52 16 10 N -0.71 -14.51 4.99 -54.93 -0.27 -14.78 16 11 C 0.25 6.15 2.21 -69.08 -0.15 5.99 16 12 H 0.08 2.35 7.58 -51.93 -0.39 1.95 16 13 C -0.55 -14.03 8.46 -34.44 -0.29 -14.32 16 14 H 0.08 1.83 7.74 -52.48 -0.41 1.43 16 15 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.12 9.50 55.43 0.53 -22.60 16 17 Si 0.92 20.02 29.54 -169.99 -5.02 15.00 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C 0.42 10.78 2.81 37.16 0.10 10.89 16 22 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 23 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 24 F -0.22 -5.61 15.68 2.25 0.04 -5.58 16 25 H 0.05 0.49 7.55 -51.93 -0.39 0.09 16 26 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.39 7.70 -51.93 -0.40 -0.01 16 30 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.39 8.09 -51.92 -0.42 0.97 16 34 H 0.40 6.87 8.54 -40.82 -0.35 6.52 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -30.97 303.50 -6.38 -37.35 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.42 Total: 3.79 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -0.63 Total: 11.56 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.07 Total: -45.22 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 9 Polarization: -14.64 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.97 -6.38 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.284 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds