Wall clock time and date at job start Tue Mar 31 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47783 * 2 1 4 4 C 1.48189 * 111.06697 * 77.41890 * 3 2 1 5 5 C 1.53938 * 86.09956 * 137.52609 * 4 3 2 6 6 C 1.47959 * 111.00337 * 176.85568 * 3 2 1 7 7 H 1.08998 * 113.85897 * 108.08761 * 6 3 2 8 8 C 1.50702 * 113.75766 * 336.73411 * 6 3 2 9 9 O 1.21281 * 120.00199 * 43.92772 * 8 6 3 10 10 N 1.34777 * 119.99858 * 223.93104 * 8 6 3 11 11 C 1.46501 * 120.00119 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.46948 * 324.99265 * 11 10 8 13 13 C 1.50699 * 109.47074 * 204.99540 * 11 10 8 14 14 H 1.07998 * 120.00195 * 275.12245 * 13 11 10 15 15 C 1.37878 * 119.99826 * 95.12945 * 13 11 10 16 16 N 1.31514 * 119.99804 * 174.52474 * 15 13 11 17 17 Si 1.86803 * 120.00055 * 354.51750 * 15 13 11 18 18 H 1.48505 * 109.46702 * 94.46057 * 17 15 13 19 19 H 1.48501 * 109.47162 * 214.45974 * 17 15 13 20 20 H 1.48496 * 109.47254 * 334.45865 * 17 15 13 21 21 C 1.53000 * 109.47194 * 84.99221 * 11 10 8 22 22 F 1.39901 * 109.47344 * 63.99473 * 21 11 10 23 23 F 1.39902 * 109.46619 * 183.99169 * 21 11 10 24 24 F 1.39898 * 109.47495 * 303.99222 * 21 11 10 25 25 H 1.08994 * 109.46937 * 59.99482 * 1 2 3 26 26 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46787 * 300.00112 * 1 2 3 28 28 H 1.08998 * 109.46918 * 239.99492 * 2 1 3 29 29 H 1.09006 * 109.47275 * 120.00331 * 2 1 3 30 30 H 1.08997 * 113.76539 * 23.24609 * 4 3 2 31 31 H 1.09007 * 113.82634 * 251.81056 * 4 3 2 32 32 H 1.08998 * 113.73515 * 221.95772 * 5 4 3 33 33 H 1.08998 * 113.73843 * 90.77584 * 5 4 3 34 34 H 0.97002 * 120.00035 * 359.97438 * 10 8 6 35 35 H 0.97003 * 119.99994 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.9134 1.9876 1.3496 5 6 3.3113 2.5745 1.0827 6 6 3.4969 1.4250 0.0758 7 1 3.9779 1.7289 -0.8539 8 6 4.1079 0.1850 0.6758 9 8 3.7058 -0.9103 0.3447 10 7 5.1012 0.2931 1.5803 11 6 5.6956 -0.9123 2.1632 12 1 4.9262 -1.6750 2.2838 13 6 6.2886 -0.5800 3.5082 14 1 7.2891 -0.1785 3.5729 15 6 5.5539 -0.7888 4.6561 16 7 6.1075 -0.6014 5.8343 17 14 3.7723 -1.3377 4.5379 18 1 3.7030 -2.8180 4.6348 19 1 2.9930 -0.7319 5.6474 20 1 3.2046 -0.8996 3.2375 21 6 6.7942 -1.4382 1.2372 22 9 7.8251 -0.4961 1.1547 23 9 7.2994 -2.6387 1.7480 24 9 6.2627 -1.6607 -0.0376 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8913 1.2556 2.1570 31 1 1.1300 2.7406 1.4351 32 1 3.9816 2.5188 1.9405 33 1 3.2918 3.5622 0.6222 34 1 5.4230 1.1691 1.8449 35 1 5.5905 -0.7479 6.6419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156053191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:57 Heat of formation + Delta-G solvation = -155.471233 kcal Electronic energy + Delta-G solvation = -23897.918180 eV Core-core repulsion = 19903.130875 eV Total energy + Delta-G solvation = -3994.787305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.11215 -46.63037 -46.59984 -40.84979 -37.72775 -34.97921 -32.95478 -32.24827 -29.43202 -27.14143 -26.33393 -25.03076 -22.20219 -21.86623 -20.78378 -19.28598 -18.04409 -17.58275 -16.99282 -16.71174 -16.40608 -16.16901 -15.53257 -14.79873 -14.60177 -13.99089 -13.82122 -13.54387 -13.45581 -13.13781 -13.09172 -12.99172 -12.80704 -12.74344 -12.66553 -12.32531 -11.92930 -11.87250 -11.26579 -11.14892 -11.01599 -10.80775 -10.69409 -10.56672 -10.24549 -9.87235 -9.64967 -9.10604 -8.68294 -8.27352 -6.61022 -4.75966 2.96177 3.00745 3.13006 3.18454 3.52930 3.87385 3.90920 4.00956 4.49846 4.73467 4.89026 5.01673 5.12966 5.22073 5.22471 5.33085 5.44662 5.48427 5.58365 5.70481 5.82684 5.84737 5.96126 6.09985 6.19716 6.21879 6.31052 6.61313 6.81767 7.03747 7.08826 7.76596 8.19029 8.45559 8.69471 8.94617 10.47371 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.008544 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.723670 B = 3276.209481 C = 4047.410048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.013 3.987 3 N -0.458 5.458 4 C -0.005 4.005 5 C -0.140 4.140 6 C 0.008 3.992 7 H 0.123 0.877 8 C 0.495 3.505 9 O -0.535 6.535 10 N -0.706 5.706 11 C 0.204 3.796 12 H 0.089 0.911 13 C -0.539 4.539 14 H 0.095 0.905 15 C 0.100 3.900 16 N -0.857 5.857 17 Si 0.869 3.131 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.255 1.255 21 C 0.439 3.561 22 F -0.190 7.190 23 F -0.184 7.184 24 F -0.196 7.196 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.401 0.599 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 4.940 -7.315 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 N -0.181 5.181 4 C -0.134 4.134 5 C -0.178 4.178 6 C -0.104 4.104 7 H 0.141 0.859 8 C 0.280 3.720 9 O -0.413 6.413 10 N -0.359 5.359 11 C 0.101 3.899 12 H 0.106 0.894 13 C -0.576 4.576 14 H 0.113 0.887 15 C -0.111 4.111 16 N -0.489 5.489 17 Si 0.694 3.306 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.179 1.179 21 C 0.384 3.616 22 F -0.172 7.172 23 F -0.165 7.165 24 F -0.178 7.178 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.237 0.763 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.712 4.408 -7.909 11.271 hybrid contribution -0.160 -0.476 0.680 0.845 sum -6.872 3.932 -7.229 10.721 Atomic orbital electron populations 1.21762 0.95876 1.01191 1.01535 1.22874 0.94787 0.89863 1.03995 1.68767 1.05700 1.17690 1.25919 1.24018 0.98141 0.99379 0.91843 1.23412 0.97208 0.98304 0.98860 1.23405 0.92078 0.94171 1.00796 0.85916 1.20899 0.80955 0.90556 0.79612 1.90680 1.61277 1.28302 1.61047 1.47563 1.35671 1.11092 1.41595 1.20037 0.90676 0.87982 0.91248 0.89355 1.20759 1.03824 1.46885 0.86168 0.88679 1.24999 0.98501 0.92677 0.94878 1.69861 1.37241 1.43962 0.97870 0.86920 0.84411 0.80146 0.79082 1.19354 1.20392 1.17913 1.21652 0.84562 0.75638 0.79782 1.93075 1.62299 1.65367 1.96411 1.93105 1.88679 1.47633 1.87105 1.93136 1.86176 1.94883 1.43596 0.92501 0.92553 0.93379 0.89732 0.91927 0.91153 0.89164 0.89917 0.88357 0.76250 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.06 37.16 0.37 -1.56 16 2 C 0.01 0.21 4.10 -3.83 -0.02 0.19 16 3 N -0.46 -6.79 6.21 -231.86 -1.44 -8.23 16 4 C 0.00 -0.07 7.22 -2.63 -0.02 -0.09 16 5 C -0.14 -1.72 7.71 -25.79 -0.20 -1.92 16 6 C 0.01 0.12 4.80 -67.80 -0.33 -0.21 16 7 H 0.12 1.64 8.14 -51.93 -0.42 1.21 16 8 C 0.50 9.23 5.95 -10.98 -0.07 9.16 16 9 O -0.54 -11.52 11.67 5.56 0.06 -11.46 16 10 N -0.71 -13.56 4.84 -54.93 -0.27 -13.82 16 11 C 0.20 4.56 1.50 -69.08 -0.10 4.46 16 12 H 0.09 2.11 5.06 -51.93 -0.26 1.85 16 13 C -0.54 -13.37 8.66 -34.44 -0.30 -13.67 16 14 H 0.10 2.56 7.72 -52.49 -0.41 2.15 16 15 C 0.10 2.54 5.47 -17.82 -0.10 2.44 16 16 N -0.86 -23.07 13.96 55.43 0.77 -22.30 16 17 Si 0.87 19.54 27.05 -169.99 -4.60 14.94 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.26 -5.69 6.81 56.52 0.38 -5.31 16 21 C 0.44 9.66 2.83 37.16 0.11 9.76 16 22 F -0.19 -4.05 16.67 2.25 0.04 -4.01 16 23 F -0.18 -4.15 17.12 2.25 0.04 -4.11 16 24 F -0.20 -4.26 15.57 2.25 0.04 -4.23 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.61 7.80 -51.93 -0.40 0.21 16 28 H 0.08 1.46 7.46 -51.93 -0.39 1.08 16 29 H 0.06 1.19 5.53 -51.93 -0.29 0.90 16 30 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.03 6.72 -51.93 -0.35 0.68 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 6.86 7.19 -40.82 -0.29 6.56 16 35 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -27.73 296.58 -5.58 -33.32 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.05 Total: 6.85 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.64 Total: 8.58 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.93 Total: -44.34 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.06 Total: -11.46 kcal Atomic # 9 Polarization: -12.46 SS G_CDS: 0.11 Total: -12.35 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.60 Total: 14.94 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.73 -5.58 -33.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.154 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds