Wall clock time and date at job start Tue Mar 31 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47783 * 2 1 4 4 C 1.48189 * 111.06697 * 77.41890 * 3 2 1 5 5 C 1.53938 * 86.09956 * 137.52609 * 4 3 2 6 6 C 1.47959 * 111.00337 * 176.85568 * 3 2 1 7 7 H 1.08998 * 113.85897 * 108.08761 * 6 3 2 8 8 C 1.50702 * 113.75766 * 336.73411 * 6 3 2 9 9 O 1.21281 * 120.00199 * 43.92772 * 8 6 3 10 10 N 1.34777 * 119.99858 * 223.93104 * 8 6 3 11 11 C 1.46501 * 120.00119 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.46948 * 324.99265 * 11 10 8 13 13 C 1.50699 * 109.47074 * 204.99540 * 11 10 8 14 14 H 1.07998 * 120.00195 * 275.12245 * 13 11 10 15 15 C 1.37878 * 119.99826 * 95.12945 * 13 11 10 16 16 N 1.31514 * 119.99804 * 174.52474 * 15 13 11 17 17 Si 1.86803 * 120.00055 * 354.51750 * 15 13 11 18 18 H 1.48505 * 109.46702 * 94.46057 * 17 15 13 19 19 H 1.48501 * 109.47162 * 214.45974 * 17 15 13 20 20 H 1.48496 * 109.47254 * 334.45865 * 17 15 13 21 21 C 1.53000 * 109.47194 * 84.99221 * 11 10 8 22 22 F 1.39901 * 109.47344 * 63.99473 * 21 11 10 23 23 F 1.39902 * 109.46619 * 183.99169 * 21 11 10 24 24 F 1.39898 * 109.47495 * 303.99222 * 21 11 10 25 25 H 1.08994 * 109.46937 * 59.99482 * 1 2 3 26 26 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46787 * 300.00112 * 1 2 3 28 28 H 1.08998 * 109.46918 * 239.99492 * 2 1 3 29 29 H 1.09006 * 109.47275 * 120.00331 * 2 1 3 30 30 H 1.08997 * 113.76539 * 23.24609 * 4 3 2 31 31 H 1.09007 * 113.82634 * 251.81056 * 4 3 2 32 32 H 1.08998 * 113.73515 * 221.95772 * 5 4 3 33 33 H 1.08998 * 113.73843 * 90.77584 * 5 4 3 34 34 H 0.97002 * 120.00035 * 359.97438 * 10 8 6 35 35 H 0.97003 * 119.99994 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.9134 1.9876 1.3496 5 6 3.3113 2.5745 1.0827 6 6 3.4969 1.4250 0.0758 7 1 3.9779 1.7289 -0.8539 8 6 4.1079 0.1850 0.6758 9 8 3.7058 -0.9103 0.3447 10 7 5.1012 0.2931 1.5803 11 6 5.6956 -0.9123 2.1632 12 1 4.9262 -1.6750 2.2838 13 6 6.2886 -0.5800 3.5082 14 1 7.2891 -0.1785 3.5729 15 6 5.5539 -0.7888 4.6561 16 7 6.1075 -0.6014 5.8343 17 14 3.7723 -1.3377 4.5379 18 1 3.7030 -2.8180 4.6348 19 1 2.9930 -0.7319 5.6474 20 1 3.2046 -0.8996 3.2375 21 6 6.7942 -1.4382 1.2372 22 9 7.8251 -0.4961 1.1547 23 9 7.2994 -2.6387 1.7480 24 9 6.2627 -1.6607 -0.0376 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8913 1.2556 2.1570 31 1 1.1300 2.7406 1.4351 32 1 3.9816 2.5188 1.9405 33 1 3.2918 3.5622 0.6222 34 1 5.4230 1.1691 1.8449 35 1 5.5905 -0.7479 6.6419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156053191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:56 Heat of formation + Delta-G solvation = -175.962894 kcal Electronic energy + Delta-G solvation = -23898.806765 eV Core-core repulsion = 19903.130875 eV Total energy + Delta-G solvation = -3995.675890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.91097 -48.42579 -48.39806 -42.14569 -39.16524 -36.69443 -34.67938 -33.60241 -31.13739 -28.22493 -27.60150 -26.92127 -23.70975 -23.09067 -22.36098 -20.80341 -19.73701 -19.36353 -18.73461 -18.49070 -17.78670 -17.51515 -17.13695 -16.33288 -15.80824 -15.61690 -15.33724 -15.21927 -15.08189 -14.86837 -14.77945 -14.60455 -14.53934 -14.42510 -14.33671 -13.71037 -13.40782 -13.07415 -12.95284 -12.63051 -12.27635 -12.12805 -12.03193 -11.89042 -11.85187 -11.72070 -11.14175 -10.93855 -10.23047 -9.68614 -8.58434 -6.76368 1.19559 1.28317 1.36482 1.47583 1.93367 2.11972 2.12956 2.77402 2.86590 3.25358 3.31781 3.42492 3.45480 3.82437 3.94509 4.04904 4.26143 4.34508 4.38798 4.49725 4.68622 4.70209 4.86439 4.88763 4.92569 5.02694 5.12078 5.19842 5.40330 5.42827 5.84551 5.89276 6.41779 6.62931 6.96426 7.20176 8.54018 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.008544 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.723670 B = 3276.209481 C = 4047.410048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.017 3.983 3 N -0.453 5.453 4 C -0.009 4.009 5 C -0.124 4.124 6 C 0.005 3.995 7 H 0.144 0.856 8 C 0.493 3.507 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.213 3.787 12 H 0.075 0.925 13 C -0.538 4.538 14 H 0.069 0.931 15 C 0.064 3.936 16 N -0.896 5.896 17 Si 0.922 3.078 18 H -0.274 1.274 19 H -0.268 1.268 20 H -0.256 1.256 21 C 0.440 3.560 22 F -0.185 7.185 23 F -0.189 7.189 24 F -0.193 7.193 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.413 0.587 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 6.439 -8.275 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 N -0.175 5.175 4 C -0.138 4.138 5 C -0.162 4.162 6 C -0.108 4.108 7 H 0.161 0.839 8 C 0.279 3.721 9 O -0.444 6.444 10 N -0.357 5.357 11 C 0.108 3.892 12 H 0.093 0.907 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.193 1.193 20 H -0.180 1.180 21 C 0.385 3.615 22 F -0.167 7.167 23 F -0.170 7.170 24 F -0.174 7.174 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.150 0.850 34 H 0.251 0.749 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.139 5.936 -8.877 13.427 hybrid contribution 0.322 -0.946 0.902 1.346 sum -7.817 4.990 -7.975 12.232 Atomic orbital electron populations 1.21705 0.93636 1.01884 1.02420 1.22722 0.96666 0.90171 1.01547 1.68816 1.05347 1.16572 1.26814 1.24104 1.00019 0.99335 0.90296 1.23462 0.95981 0.98746 0.98004 1.23467 0.92038 0.93095 1.02163 0.83867 1.21575 0.80061 0.91636 0.78798 1.90676 1.61862 1.30036 1.61837 1.47148 1.36039 1.10515 1.41974 1.19707 0.90282 0.88652 0.90596 0.90735 1.20688 1.02844 1.46628 0.87439 0.91309 1.25533 1.01436 0.92760 0.94537 1.69930 1.38717 1.45823 0.98606 0.86097 0.80811 0.79328 0.79138 1.19902 1.19280 1.18012 1.21583 0.84566 0.75537 0.79860 1.93083 1.62052 1.65142 1.96392 1.93094 1.88754 1.47973 1.87204 1.93142 1.86152 1.94864 1.43289 0.91275 0.92082 0.92699 0.91455 0.95171 0.93348 0.86542 0.90049 0.85013 0.74881 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 10.06 71.98 0.72 -2.68 16 2 C 0.02 0.54 4.10 86.30 0.35 0.90 16 3 N -0.45 -12.27 6.21 -887.48 -5.52 -17.79 16 4 C -0.01 -0.22 7.22 86.37 0.62 0.41 16 5 C -0.12 -2.61 7.71 31.24 0.24 -2.37 16 6 C 0.00 0.13 4.80 44.28 0.21 0.34 16 7 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 8 C 0.49 17.80 5.95 87.66 0.52 18.32 16 9 O -0.56 -24.13 11.67 -3.03 -0.04 -24.17 16 10 N -0.70 -26.33 4.84 -446.09 -2.16 -28.49 16 11 C 0.21 9.48 1.50 44.24 0.07 9.55 16 12 H 0.07 3.56 5.06 -2.39 -0.01 3.55 16 13 C -0.54 -26.92 8.66 25.60 0.22 -26.70 16 14 H 0.07 3.77 7.72 -2.91 -0.02 3.75 16 15 C 0.06 3.27 5.47 84.65 0.46 3.74 16 16 N -0.90 -48.70 13.96 21.45 0.30 -48.40 16 17 Si 0.92 40.47 27.05 68.60 1.86 42.33 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.26 -11.18 6.81 99.48 0.68 -10.50 16 21 C 0.44 19.22 2.83 71.98 0.20 19.43 16 22 F -0.19 -7.79 16.67 44.97 0.75 -7.04 16 23 F -0.19 -8.52 17.12 44.97 0.77 -7.75 16 24 F -0.19 -8.25 15.57 44.97 0.70 -7.55 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.26 7.80 -2.38 -0.02 1.25 16 28 H 0.07 2.30 7.46 -2.39 -0.02 2.28 16 29 H 0.03 1.14 5.53 -2.38 -0.01 1.12 16 30 H 0.05 1.40 7.68 -2.39 -0.02 1.38 16 31 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.08 1.77 6.72 -2.39 -0.02 1.75 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.41 13.57 7.19 -92.71 -0.67 12.90 16 35 H 0.28 14.15 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -59.45 296.58 0.73 -58.71 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.44 Total: 19.23 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 3.63 Total: 20.92 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -7.37 Total: -94.68 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.04 Total: -24.17 kcal Atomic # 9 Polarization: -24.57 SS G_CDS: 2.22 Total: -22.35 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.86 Total: 42.33 kcal Total: -59.45 0.73 -58.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.248 kcal (2) G-P(sol) polarization free energy of solvation -59.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds