Wall clock time and date at job start Tue Mar 31 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47285 * 2 1 4 4 C 1.48193 * 111.07154 * 70.70923 * 3 2 1 5 5 C 1.53933 * 86.21978 * 137.46527 * 4 3 2 6 6 C 1.47955 * 111.00366 * 169.99728 * 3 2 1 7 7 H 1.09004 * 113.75843 * 336.84802 * 6 3 2 8 8 C 1.50698 * 113.76034 * 108.09899 * 6 3 2 9 9 O 1.21286 * 119.99971 * 358.02671 * 8 6 3 10 10 N 1.34776 * 120.00719 * 178.02184 * 8 6 3 11 11 C 1.46497 * 120.00597 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.46734 * 35.00165 * 11 10 8 13 13 C 1.50694 * 109.47115 * 155.00048 * 11 10 8 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.53000 * 109.47145 * 275.00122 * 11 10 8 22 22 F 1.39900 * 109.47102 * 300.00088 * 21 11 10 23 23 F 1.39904 * 109.47078 * 59.99624 * 21 11 10 24 24 F 1.39893 * 109.47124 * 179.97438 * 21 11 10 25 25 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47338 * 299.99896 * 1 2 3 27 27 H 1.08999 * 109.47338 * 60.00389 * 1 2 3 28 28 H 1.09001 * 109.47338 * 240.00104 * 2 1 3 29 29 H 1.08999 * 109.47257 * 120.00394 * 2 1 3 30 30 H 1.08991 * 113.65915 * 23.14052 * 4 3 2 31 31 H 1.09000 * 113.92040 * 251.82279 * 4 3 2 32 32 H 1.09004 * 113.73048 * 222.00615 * 5 4 3 33 33 H 1.09005 * 113.83372 * 90.74376 * 5 4 3 34 34 H 0.97005 * 119.99522 * 0.02562 * 10 8 6 35 35 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7666 2.0396 1.3052 5 6 3.1868 2.6189 1.1748 6 6 3.4789 1.4315 0.2399 7 1 3.8676 0.5527 0.7545 8 6 4.2832 1.8022 -0.9794 9 8 3.7248 1.9940 -2.0388 10 7 5.6229 1.9207 -0.8927 11 6 6.4047 2.2816 -2.0779 12 1 5.8325 2.9762 -2.6928 13 6 7.6937 2.9343 -1.6497 14 1 7.9093 3.0667 -0.5998 15 6 8.5984 3.3617 -2.5985 16 7 8.3361 3.2001 -3.8770 17 14 10.1928 4.1777 -2.0679 18 1 11.2435 3.1432 -1.8916 19 1 10.6223 5.1473 -3.1074 20 1 9.9800 4.8911 -0.7830 21 6 6.7156 1.0209 -2.8871 22 9 7.4500 0.1294 -2.0978 23 9 5.5189 0.4150 -3.2845 24 9 7.4616 1.3657 -4.0192 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6526 1.3381 2.1315 31 1 0.9802 2.7938 1.2762 32 1 3.7566 2.5966 2.1037 33 1 3.2231 3.5882 0.6774 34 1 6.0695 1.7670 -0.0454 35 1 8.9728 3.5003 -4.5444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156053192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:59 Heat of formation + Delta-G solvation = -138.738801 kcal Electronic energy + Delta-G solvation = -23337.636394 eV Core-core repulsion = 19343.574662 eV Total energy + Delta-G solvation = -3994.061732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.33425 -45.99025 -45.59778 -40.35980 -37.95111 -34.55436 -32.80368 -32.43390 -28.87230 -27.29666 -26.31838 -24.53320 -22.29388 -21.73551 -20.35428 -19.42696 -17.67799 -16.84868 -16.68867 -16.51483 -16.24355 -15.59629 -15.07099 -14.86107 -14.67303 -13.85625 -13.69583 -13.31487 -12.91996 -12.76905 -12.58201 -12.44816 -12.38729 -12.26795 -11.98046 -11.95462 -11.81142 -11.50692 -11.39248 -11.17541 -10.97071 -10.87736 -10.78732 -10.57676 -10.39454 -9.64472 -9.21996 -8.72136 -8.61268 -8.21561 -6.22865 -4.46968 3.16850 3.20285 3.24766 3.27417 3.56324 4.13471 4.24862 4.45343 4.59736 4.79105 4.93557 4.95858 5.07804 5.20092 5.27798 5.36082 5.50514 5.58247 5.71944 5.74552 5.86608 5.89506 5.93052 6.03786 6.14395 6.23507 6.37116 6.95751 7.03578 7.22558 7.48947 7.63962 8.37793 8.51568 8.97312 9.21172 10.68692 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.005421 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.180194 B = 5164.085012 C = 5786.045114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.015 3.985 3 N -0.449 5.449 4 C 0.000 4.000 5 C -0.128 4.128 6 C 0.009 3.991 7 H 0.097 0.903 8 C 0.518 3.482 9 O -0.515 6.515 10 N -0.713 5.713 11 C 0.246 3.754 12 H 0.085 0.915 13 C -0.551 4.551 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.417 3.583 22 F -0.210 7.210 23 F -0.218 7.218 24 F -0.137 7.137 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -3.606 10.619 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 N -0.172 5.172 4 C -0.128 4.128 5 C -0.166 4.166 6 C -0.104 4.104 7 H 0.114 0.886 8 C 0.302 3.698 9 O -0.389 6.389 10 N -0.363 5.363 11 C 0.141 3.859 12 H 0.102 0.898 13 C -0.588 4.588 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.473 5.473 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.360 3.640 22 F -0.192 7.192 23 F -0.200 7.200 24 F -0.118 7.118 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.230 0.770 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.921 -3.193 8.976 13.052 hybrid contribution 1.471 -0.602 1.116 1.942 sum -7.450 -3.795 10.092 13.105 Atomic orbital electron populations 1.21689 0.94580 1.01443 1.02445 1.22626 0.96673 0.90756 1.01251 1.68497 1.04254 1.15089 1.29402 1.23912 0.98225 0.98969 0.91717 1.23276 0.96068 0.98454 0.98828 1.23459 0.91588 1.00002 0.95352 0.88559 1.20002 0.82493 0.77998 0.89337 1.90705 1.70433 1.48385 1.29385 1.46026 1.05975 1.70610 1.13709 1.19690 0.93648 0.88673 0.83913 0.89791 1.20875 1.01693 1.41878 0.94379 0.90470 1.25095 0.99257 0.95318 0.94775 1.70407 1.36067 1.40759 1.00057 0.86216 0.82023 0.79092 0.78516 1.20249 1.20806 1.19478 1.23164 0.73339 0.86664 0.80808 1.92982 1.78824 1.72072 1.75328 1.93071 1.48634 1.86303 1.91989 1.93402 1.75752 1.90468 1.52181 0.92400 0.92923 0.91669 0.90264 0.94449 0.91283 0.89068 0.90172 0.88396 0.76967 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.98 37.16 0.37 -1.14 16 2 C 0.02 0.19 5.54 -3.83 -0.02 0.17 16 3 N -0.45 -6.53 5.72 -231.11 -1.32 -7.85 16 4 C 0.00 0.00 7.12 -2.64 -0.02 -0.01 16 5 C -0.13 -1.51 7.84 -25.79 -0.20 -1.71 16 6 C 0.01 0.13 3.72 -67.82 -0.25 -0.12 16 7 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 8 C 0.52 10.36 6.95 -10.99 -0.08 10.28 16 9 O -0.52 -12.60 15.25 5.55 0.08 -12.52 16 10 N -0.71 -14.51 4.98 -54.94 -0.27 -14.78 16 11 C 0.25 6.15 2.21 -69.09 -0.15 5.99 16 12 H 0.08 2.36 7.58 -51.93 -0.39 1.97 16 13 C -0.55 -13.99 8.47 -34.44 -0.29 -14.28 16 14 H 0.08 1.84 7.74 -52.49 -0.41 1.43 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.12 9.50 55.43 0.53 -22.59 16 17 Si 0.92 20.00 29.54 -169.99 -5.02 14.98 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C 0.42 10.79 2.81 37.16 0.10 10.90 16 22 F -0.21 -5.21 16.94 2.25 0.04 -5.17 16 23 F -0.22 -5.66 15.68 2.25 0.04 -5.62 16 24 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.05 0.49 7.55 -51.93 -0.39 0.10 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.40 7.69 -51.93 -0.40 0.00 16 30 H 0.07 0.61 7.78 -51.93 -0.40 0.20 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.30 8.09 -51.93 -0.42 0.88 16 34 H 0.40 6.87 8.54 -40.82 -0.35 6.52 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -30.96 303.47 -6.38 -37.34 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.42 Total: 3.77 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.63 Total: 11.66 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.07 Total: -45.22 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.96 -6.38 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.397 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds