Wall clock time and date at job start Tue Mar 31 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47285 * 2 1 4 4 C 1.48193 * 111.07154 * 70.70923 * 3 2 1 5 5 C 1.53933 * 86.21978 * 137.46527 * 4 3 2 6 6 C 1.47955 * 111.00366 * 169.99728 * 3 2 1 7 7 H 1.09004 * 113.75843 * 336.84802 * 6 3 2 8 8 C 1.50698 * 113.76034 * 108.09899 * 6 3 2 9 9 O 1.21286 * 119.99971 * 358.02671 * 8 6 3 10 10 N 1.34776 * 120.00719 * 178.02184 * 8 6 3 11 11 C 1.46497 * 120.00597 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.46734 * 35.00165 * 11 10 8 13 13 C 1.50694 * 109.47115 * 155.00048 * 11 10 8 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.53000 * 109.47145 * 275.00122 * 11 10 8 22 22 F 1.39900 * 109.47102 * 300.00088 * 21 11 10 23 23 F 1.39904 * 109.47078 * 59.99624 * 21 11 10 24 24 F 1.39893 * 109.47124 * 179.97438 * 21 11 10 25 25 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47338 * 299.99896 * 1 2 3 27 27 H 1.08999 * 109.47338 * 60.00389 * 1 2 3 28 28 H 1.09001 * 109.47338 * 240.00104 * 2 1 3 29 29 H 1.08999 * 109.47257 * 120.00394 * 2 1 3 30 30 H 1.08991 * 113.65915 * 23.14052 * 4 3 2 31 31 H 1.09000 * 113.92040 * 251.82279 * 4 3 2 32 32 H 1.09004 * 113.73048 * 222.00615 * 5 4 3 33 33 H 1.09005 * 113.83372 * 90.74376 * 5 4 3 34 34 H 0.97005 * 119.99522 * 0.02562 * 10 8 6 35 35 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7666 2.0396 1.3052 5 6 3.1868 2.6189 1.1748 6 6 3.4789 1.4315 0.2399 7 1 3.8676 0.5527 0.7545 8 6 4.2832 1.8022 -0.9794 9 8 3.7248 1.9940 -2.0388 10 7 5.6229 1.9207 -0.8927 11 6 6.4047 2.2816 -2.0779 12 1 5.8325 2.9762 -2.6928 13 6 7.6937 2.9343 -1.6497 14 1 7.9093 3.0667 -0.5998 15 6 8.5984 3.3617 -2.5985 16 7 8.3361 3.2001 -3.8770 17 14 10.1928 4.1777 -2.0679 18 1 11.2435 3.1432 -1.8916 19 1 10.6223 5.1473 -3.1074 20 1 9.9800 4.8911 -0.7830 21 6 6.7156 1.0209 -2.8871 22 9 7.4500 0.1294 -2.0978 23 9 5.5189 0.4150 -3.2845 24 9 7.4616 1.3657 -4.0192 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6526 1.3381 2.1315 31 1 0.9802 2.7938 1.2762 32 1 3.7566 2.5966 2.1037 33 1 3.2231 3.5882 0.6774 34 1 6.0695 1.7670 -0.0454 35 1 8.9728 3.5003 -4.5444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156053192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:58 Heat of formation + Delta-G solvation = -161.833268 kcal Electronic energy + Delta-G solvation = -23338.637845 eV Core-core repulsion = 19343.574662 eV Total energy + Delta-G solvation = -3995.063183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.43891 -48.07620 -47.74665 -41.54616 -39.45400 -36.41855 -34.46118 -33.61068 -30.66760 -28.22747 -27.60868 -26.55121 -23.71920 -23.02767 -21.86215 -20.74881 -19.37663 -18.88138 -18.69674 -18.32927 -17.65860 -16.98851 -16.85522 -16.29783 -15.99194 -15.22453 -15.11482 -14.97880 -14.70350 -14.57517 -14.48612 -14.31553 -14.07811 -13.99467 -13.83719 -13.35657 -13.05947 -12.84352 -12.74687 -12.65465 -12.53808 -12.34023 -12.19951 -11.85594 -11.56789 -11.56319 -10.72970 -10.69136 -10.03526 -9.67402 -8.20785 -6.52072 1.47493 1.48075 1.59871 1.66299 2.12893 2.39324 2.51028 2.93650 3.02429 3.46774 3.70501 3.79708 3.84705 3.99262 4.03444 4.17759 4.23818 4.35178 4.44118 4.60447 4.75626 4.87491 4.90978 4.93601 5.04477 5.17614 5.23801 5.43535 5.44683 5.56985 5.65542 6.09860 6.53242 6.78909 7.17841 7.43078 8.72050 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.005421 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.180194 B = 5164.085012 C = 5786.045114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.014 3.986 3 N -0.489 5.489 4 C 0.013 3.987 5 C -0.120 4.120 6 C 0.010 3.990 7 H 0.126 0.874 8 C 0.512 3.488 9 O -0.569 6.569 10 N -0.704 5.704 11 C 0.253 3.747 12 H 0.042 0.958 13 C -0.559 4.559 14 H 0.095 0.905 15 C 0.013 3.987 16 N -0.877 5.877 17 Si 0.985 3.015 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.413 3.587 22 F -0.202 7.202 23 F -0.222 7.222 24 F -0.151 7.151 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 -3.744 13.799 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 N -0.213 5.213 4 C -0.114 4.114 5 C -0.158 4.158 6 C -0.102 4.102 7 H 0.143 0.857 8 C 0.298 3.702 9 O -0.446 6.446 10 N -0.356 5.356 11 C 0.146 3.854 12 H 0.060 0.940 13 C -0.596 4.596 14 H 0.113 0.887 15 C -0.193 4.193 16 N -0.511 5.511 17 Si 0.808 3.192 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.178 1.178 21 C 0.357 3.643 22 F -0.184 7.184 23 F -0.204 7.204 24 F -0.132 7.132 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.250 0.750 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.803 -3.343 12.214 15.423 hybrid contribution 1.365 -0.592 0.091 1.491 sum -7.438 -3.935 12.306 14.908 Atomic orbital electron populations 1.21652 0.93139 1.02495 1.02266 1.22656 0.97885 0.89955 1.00944 1.68455 1.04001 1.16528 1.32323 1.23983 0.97625 0.99075 0.90740 1.23270 0.97317 0.96117 0.99048 1.23527 0.91229 1.02485 0.93002 0.85693 1.21103 0.82227 0.76307 0.90536 1.90674 1.71299 1.50636 1.32038 1.45891 1.06283 1.70392 1.13035 1.19269 0.93755 0.87527 0.84893 0.94038 1.21239 1.01563 1.41507 0.95253 0.88703 1.26052 1.02797 0.95729 0.94672 1.70548 1.37286 1.41985 1.01310 0.85134 0.77499 0.77985 0.78549 1.19944 1.20978 1.17785 1.23357 0.73140 0.87200 0.80631 1.92982 1.78629 1.71818 1.74975 1.93061 1.48830 1.86391 1.92073 1.93373 1.76133 1.90660 1.53069 0.90760 0.91200 0.93678 0.93269 0.91969 0.88156 0.88459 0.86680 0.90492 0.74957 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.98 71.98 0.72 -1.91 16 2 C 0.01 0.33 5.54 86.30 0.48 0.80 16 3 N -0.49 -13.46 5.72 -885.09 -5.07 -18.53 16 4 C 0.01 0.24 7.12 86.36 0.62 0.86 16 5 C -0.12 -2.47 7.84 31.23 0.24 -2.23 16 6 C 0.01 0.28 3.72 44.27 0.16 0.45 16 7 H 0.13 2.71 7.79 -2.38 -0.02 2.69 16 8 C 0.51 20.57 6.95 87.66 0.61 21.18 16 9 O -0.57 -28.96 15.25 -3.05 -0.05 -29.01 16 10 N -0.70 -28.54 4.98 -446.11 -2.22 -30.77 16 11 C 0.25 12.88 2.21 44.24 0.10 12.98 16 12 H 0.04 2.47 7.58 -2.39 -0.02 2.46 16 13 C -0.56 -28.17 8.47 25.60 0.22 -27.96 16 14 H 0.10 4.34 7.74 -2.91 -0.02 4.31 16 15 C 0.01 0.65 5.20 84.66 0.44 1.09 16 16 N -0.88 -49.25 9.50 21.45 0.20 -49.05 16 17 Si 0.99 40.38 29.54 68.60 2.03 42.41 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 19 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 21 C 0.41 21.86 2.81 71.98 0.20 22.06 16 22 F -0.20 -9.99 16.94 44.97 0.76 -9.23 16 23 F -0.22 -11.85 15.68 44.97 0.70 -11.15 16 24 F -0.15 -8.71 12.91 44.97 0.58 -8.13 16 25 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.07 1.08 7.55 -2.39 -0.02 1.07 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.13 7.69 -2.39 -0.02 1.11 16 30 H 0.10 1.23 7.78 -2.39 -0.02 1.21 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.08 1.93 8.09 -2.38 -0.02 1.91 16 34 H 0.41 13.67 8.54 -92.70 -0.79 12.88 16 35 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -69.55 303.47 1.06 -68.49 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.33 Total: 17.64 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 3.79 Total: 27.32 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -7.09 Total: -98.35 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.01 kcal Atomic # 9 Polarization: -30.55 SS G_CDS: 2.05 Total: -28.50 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -69.55 1.06 -68.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.340 kcal (2) G-P(sol) polarization free energy of solvation -69.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds