Wall clock time and date at job start Tue Mar 31 2020 02:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47208 * 2 1 4 4 C 1.47959 * 110.99946 * 175.82653 * 3 2 1 5 5 C 1.53928 * 86.17821 * 222.41635 * 4 3 2 6 6 C 1.48187 * 111.07186 * 76.38932 * 3 2 1 7 7 H 1.09002 * 113.75858 * 23.23903 * 6 3 2 8 8 C 1.50699 * 113.82556 * 251.80927 * 6 3 2 9 9 O 1.21285 * 119.99774 * 3.99612 * 8 6 3 10 10 N 1.34770 * 119.99993 * 183.99841 * 8 6 3 11 11 C 1.46504 * 119.99888 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46990 * 34.99550 * 11 10 8 13 13 C 1.50695 * 109.47116 * 154.99947 * 11 10 8 14 14 H 1.07998 * 120.00103 * 117.72478 * 13 11 10 15 15 C 1.37873 * 120.00133 * 297.72771 * 13 11 10 16 16 N 1.31516 * 120.00369 * 170.78957 * 15 13 11 17 17 Si 1.86802 * 119.99997 * 350.78191 * 15 13 11 18 18 H 1.48496 * 109.47085 * 92.23612 * 17 15 13 19 19 H 1.48499 * 109.47346 * 212.23688 * 17 15 13 20 20 H 1.48500 * 109.46845 * 332.23728 * 17 15 13 21 21 C 1.53008 * 109.46874 * 274.99785 * 11 10 8 22 22 F 1.39899 * 109.46740 * 65.00216 * 21 11 10 23 23 F 1.39903 * 109.46888 * 185.00269 * 21 11 10 24 24 F 1.39898 * 109.47035 * 305.00376 * 21 11 10 25 25 H 1.08998 * 109.47499 * 182.58134 * 1 2 3 26 26 H 1.09008 * 109.46872 * 302.58241 * 1 2 3 27 27 H 1.08998 * 109.47511 * 62.57607 * 1 2 3 28 28 H 1.09002 * 109.46830 * 239.99789 * 2 1 3 29 29 H 1.09001 * 109.47047 * 119.99810 * 2 1 3 30 30 H 1.08994 * 113.76463 * 108.09632 * 4 3 2 31 31 H 1.09003 * 113.75780 * 336.73173 * 4 3 2 32 32 H 1.09001 * 113.73670 * 138.07567 * 5 4 3 33 33 H 1.09004 * 113.73309 * 269.25045 * 5 4 3 34 34 H 0.96993 * 120.00377 * 359.97438 * 10 8 6 35 35 H 0.96998 * 120.00242 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4953 1.4257 0.1005 5 6 3.2927 2.5811 1.0972 6 6 1.8905 1.9958 1.3439 7 1 1.8546 1.2686 2.1552 8 6 0.8055 3.0375 1.4375 9 8 0.0876 3.2525 0.4839 10 7 0.6331 3.7301 2.5806 11 6 -0.4220 4.7424 2.6717 12 1 -1.2865 4.4193 2.0916 13 6 -0.8229 4.9219 4.1132 14 1 -0.6841 5.8772 4.5974 15 6 -1.3668 3.8665 4.8141 16 7 -1.5486 3.9636 6.1130 17 14 -1.8457 2.2986 3.9187 18 1 -0.7075 1.3453 3.9464 19 1 -3.0212 1.6856 4.5879 20 1 -2.1893 2.6184 2.5098 21 6 0.0966 6.0709 2.1173 22 9 0.3614 5.9341 0.7504 23 9 -0.8694 7.0647 2.3082 24 9 1.2720 6.4283 2.7865 25 1 -0.3634 -1.0266 0.0463 26 1 -0.3633 0.5535 0.8660 27 1 -0.3634 0.4733 -0.9121 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9904 1.7244 -0.8234 31 1 3.9298 0.5314 0.5473 32 1 3.9483 2.5307 1.9666 33 1 3.2811 3.5661 0.6305 34 1 1.2070 3.5579 3.3433 35 1 -1.9316 3.2212 6.6060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156053193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:01 Heat of formation + Delta-G solvation = -158.582208 kcal Electronic energy + Delta-G solvation = -23748.912090 eV Core-core repulsion = 19753.989883 eV Total energy + Delta-G solvation = -3994.922207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.07519 -46.58235 -46.56655 -40.41877 -38.05832 -34.77489 -32.74154 -32.39861 -29.57355 -27.14546 -26.45215 -25.00814 -22.02270 -21.82187 -20.56588 -19.40421 -18.23356 -17.55949 -17.07837 -16.65627 -16.41089 -16.19922 -15.40790 -14.70231 -14.46769 -13.84981 -13.71843 -13.58497 -13.45741 -13.25337 -13.03169 -12.87783 -12.76403 -12.67615 -12.52512 -12.35880 -12.05474 -11.85065 -11.49292 -11.20634 -11.11161 -11.02827 -10.71228 -10.55567 -10.17815 -9.93919 -9.32948 -8.98493 -8.67030 -8.42600 -6.53379 -4.64602 3.02296 3.06750 3.21528 3.27948 3.42831 3.89725 4.08649 4.10198 4.44486 4.74728 4.91104 4.94494 5.02141 5.10644 5.18902 5.23354 5.25677 5.33150 5.48943 5.54506 5.57538 5.74449 5.87506 5.98682 6.06828 6.25629 6.43364 6.47964 6.89585 7.01528 7.12687 7.85083 8.30633 8.50856 8.87366 9.01970 10.55215 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.008560 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.778988 B = 3270.395646 C = 4253.699862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.019 3.981 3 N -0.451 5.451 4 C 0.001 3.999 5 C -0.128 4.128 6 C 0.004 3.996 7 H 0.098 0.902 8 C 0.513 3.487 9 O -0.516 6.516 10 N -0.717 5.717 11 C 0.205 3.795 12 H 0.091 0.909 13 C -0.538 4.538 14 H 0.095 0.905 15 C 0.098 3.902 16 N -0.862 5.862 17 Si 0.872 3.128 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.255 1.255 21 C 0.442 3.558 22 F -0.193 7.193 23 F -0.185 7.185 24 F -0.190 7.190 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.401 0.599 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 -6.461 -7.147 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 N -0.174 5.174 4 C -0.128 4.128 5 C -0.166 4.166 6 C -0.109 4.109 7 H 0.115 0.885 8 C 0.297 3.703 9 O -0.391 6.391 10 N -0.371 5.371 11 C 0.102 3.898 12 H 0.108 0.892 13 C -0.576 4.576 14 H 0.113 0.887 15 C -0.111 4.111 16 N -0.495 5.495 17 Si 0.699 3.301 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.179 1.179 21 C 0.386 3.614 22 F -0.174 7.174 23 F -0.167 7.167 24 F -0.172 7.172 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.236 0.764 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.644 -6.088 -8.253 12.790 hybrid contribution 0.414 -1.268 0.730 1.520 sum 8.058 -7.356 -7.523 13.253 Atomic orbital electron populations 1.21676 0.94331 1.00805 1.03441 1.22606 0.97274 0.90372 1.00690 1.68494 1.07737 1.15894 1.25265 1.23860 0.90712 0.97980 1.00237 1.23274 0.93821 0.99885 0.99657 1.23597 0.95812 0.97777 0.93672 0.88472 1.20247 0.84390 0.82270 0.83361 1.90677 1.45271 1.66560 1.36574 1.47398 1.36351 1.38911 1.14443 1.20199 0.88532 0.80732 1.00386 0.89203 1.20802 1.43626 1.01134 0.92030 0.88696 1.24876 0.93362 0.98412 0.94479 1.69890 1.40394 1.32872 1.06392 0.86836 0.78918 0.83016 0.81360 1.19879 1.21035 1.17930 1.21495 0.75363 0.89518 0.74995 1.93154 1.94197 1.96069 1.33992 1.93105 1.63808 1.64779 1.94963 1.93079 1.50101 1.93373 1.80605 0.92721 0.92809 0.91440 0.90546 0.94451 0.88944 0.91214 0.90066 0.88481 0.76352 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.07 37.16 0.37 -1.74 16 2 C 0.02 0.25 5.46 -3.82 -0.02 0.23 16 3 N -0.45 -6.67 5.68 -231.91 -1.32 -7.99 16 4 C 0.00 0.01 7.98 -2.76 -0.02 -0.01 16 5 C -0.13 -1.59 7.83 -25.80 -0.20 -1.79 16 6 C 0.00 0.07 3.17 -67.68 -0.21 -0.15 16 7 H 0.10 1.37 7.70 -51.93 -0.40 0.97 16 8 C 0.51 10.16 6.50 -10.99 -0.07 10.09 16 9 O -0.52 -11.93 15.26 5.55 0.08 -11.84 16 10 N -0.72 -14.60 3.28 -54.93 -0.18 -14.78 16 11 C 0.21 4.73 1.41 -69.08 -0.10 4.63 16 12 H 0.09 2.22 6.16 -51.93 -0.32 1.90 16 13 C -0.54 -13.75 8.63 -34.44 -0.30 -14.05 16 14 H 0.10 2.64 7.91 -52.49 -0.41 2.23 16 15 C 0.10 2.53 5.45 -17.82 -0.10 2.43 16 16 N -0.86 -23.53 13.96 55.43 0.77 -22.75 16 17 Si 0.87 20.09 26.37 -169.99 -4.48 15.61 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.10 6.38 56.52 0.36 -5.74 16 21 C 0.44 9.81 2.79 37.16 0.10 9.92 16 22 F -0.19 -4.28 15.83 2.25 0.04 -4.24 16 23 F -0.18 -4.16 16.83 2.25 0.04 -4.12 16 24 F -0.19 -4.07 16.97 2.25 0.04 -4.04 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.93 7.36 -51.92 -0.38 0.54 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.44 7.69 -51.93 -0.40 0.04 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 34 H 0.40 7.47 8.59 -40.82 -0.35 7.12 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -29.33 304.47 -5.35 -34.69 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.39 Total: 5.33 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.54 Total: 9.55 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.73 Total: -45.52 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 9 Polarization: -12.51 SS G_CDS: 0.11 Total: -12.40 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.48 Total: 15.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.33 -5.35 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.895 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds