Wall clock time and date at job start Tue Mar 31 2020 02:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47208 * 2 1 4 4 C 1.47959 * 110.99946 * 175.82653 * 3 2 1 5 5 C 1.53928 * 86.17821 * 222.41635 * 4 3 2 6 6 C 1.48187 * 111.07186 * 76.38932 * 3 2 1 7 7 H 1.09002 * 113.75858 * 23.23903 * 6 3 2 8 8 C 1.50699 * 113.82556 * 251.80927 * 6 3 2 9 9 O 1.21285 * 119.99774 * 3.99612 * 8 6 3 10 10 N 1.34770 * 119.99993 * 183.99841 * 8 6 3 11 11 C 1.46504 * 119.99888 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46990 * 34.99550 * 11 10 8 13 13 C 1.50695 * 109.47116 * 154.99947 * 11 10 8 14 14 H 1.07998 * 120.00103 * 117.72478 * 13 11 10 15 15 C 1.37873 * 120.00133 * 297.72771 * 13 11 10 16 16 N 1.31516 * 120.00369 * 170.78957 * 15 13 11 17 17 Si 1.86802 * 119.99997 * 350.78191 * 15 13 11 18 18 H 1.48496 * 109.47085 * 92.23612 * 17 15 13 19 19 H 1.48499 * 109.47346 * 212.23688 * 17 15 13 20 20 H 1.48500 * 109.46845 * 332.23728 * 17 15 13 21 21 C 1.53008 * 109.46874 * 274.99785 * 11 10 8 22 22 F 1.39899 * 109.46740 * 65.00216 * 21 11 10 23 23 F 1.39903 * 109.46888 * 185.00269 * 21 11 10 24 24 F 1.39898 * 109.47035 * 305.00376 * 21 11 10 25 25 H 1.08998 * 109.47499 * 182.58134 * 1 2 3 26 26 H 1.09008 * 109.46872 * 302.58241 * 1 2 3 27 27 H 1.08998 * 109.47511 * 62.57607 * 1 2 3 28 28 H 1.09002 * 109.46830 * 239.99789 * 2 1 3 29 29 H 1.09001 * 109.47047 * 119.99810 * 2 1 3 30 30 H 1.08994 * 113.76463 * 108.09632 * 4 3 2 31 31 H 1.09003 * 113.75780 * 336.73173 * 4 3 2 32 32 H 1.09001 * 113.73670 * 138.07567 * 5 4 3 33 33 H 1.09004 * 113.73309 * 269.25045 * 5 4 3 34 34 H 0.96993 * 120.00377 * 359.97438 * 10 8 6 35 35 H 0.96998 * 120.00242 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4953 1.4257 0.1005 5 6 3.2927 2.5811 1.0972 6 6 1.8905 1.9958 1.3439 7 1 1.8546 1.2686 2.1552 8 6 0.8055 3.0375 1.4375 9 8 0.0876 3.2525 0.4839 10 7 0.6331 3.7301 2.5806 11 6 -0.4220 4.7424 2.6717 12 1 -1.2865 4.4193 2.0916 13 6 -0.8229 4.9219 4.1132 14 1 -0.6841 5.8772 4.5974 15 6 -1.3668 3.8665 4.8141 16 7 -1.5486 3.9636 6.1130 17 14 -1.8457 2.2986 3.9187 18 1 -0.7075 1.3453 3.9464 19 1 -3.0212 1.6856 4.5879 20 1 -2.1893 2.6184 2.5098 21 6 0.0966 6.0709 2.1173 22 9 0.3614 5.9341 0.7504 23 9 -0.8694 7.0647 2.3082 24 9 1.2720 6.4283 2.7865 25 1 -0.3634 -1.0266 0.0463 26 1 -0.3633 0.5535 0.8660 27 1 -0.3634 0.4733 -0.9121 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9904 1.7244 -0.8234 31 1 3.9298 0.5314 0.5473 32 1 3.9483 2.5307 1.9666 33 1 3.2811 3.5661 0.6305 34 1 1.2070 3.5579 3.3433 35 1 -1.9316 3.2212 6.6060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156053193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:01 Heat of formation + Delta-G solvation = -179.989256 kcal Electronic energy + Delta-G solvation = -23749.840369 eV Core-core repulsion = 19753.989883 eV Total energy + Delta-G solvation = -3995.850486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.90300 -48.41613 -48.38091 -41.62532 -39.52692 -36.58661 -34.43767 -33.66989 -31.30542 -28.32306 -27.57285 -26.94911 -23.48579 -23.00925 -22.07095 -20.73571 -19.99451 -19.37272 -18.76131 -18.40163 -18.19859 -17.31000 -16.92423 -16.27568 -15.70765 -15.39347 -15.32174 -15.24482 -14.97906 -14.85929 -14.80806 -14.61763 -14.58227 -14.52493 -13.93681 -13.70972 -13.40978 -13.11785 -13.04639 -12.65676 -12.45063 -12.15527 -12.08745 -12.01618 -11.93207 -11.61832 -11.04637 -10.75858 -10.15790 -9.73117 -8.55545 -6.70735 1.19200 1.28392 1.41148 1.58186 1.90192 2.13756 2.16952 2.82712 3.03113 3.15483 3.36031 3.43500 3.49109 3.78490 3.97289 4.01515 4.14154 4.20488 4.44401 4.55317 4.57666 4.70363 4.82704 4.89675 4.94077 4.94869 5.09525 5.24012 5.35103 5.43453 5.86817 6.05853 6.41254 6.69459 6.98483 7.30946 8.57225 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.008560 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.778988 B = 3270.395646 C = 4253.699862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.020 3.980 3 N -0.484 5.484 4 C 0.014 3.986 5 C -0.122 4.122 6 C 0.001 3.999 7 H 0.116 0.884 8 C 0.510 3.490 9 O -0.554 6.554 10 N -0.715 5.715 11 C 0.214 3.786 12 H 0.072 0.928 13 C -0.542 4.542 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.899 5.899 17 Si 0.923 3.077 18 H -0.248 1.248 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.445 3.555 22 F -0.191 7.191 23 F -0.188 7.188 24 F -0.184 7.184 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.411 0.589 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -8.579 -7.704 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 N -0.208 5.208 4 C -0.113 4.113 5 C -0.160 4.160 6 C -0.112 4.112 7 H 0.134 0.866 8 C 0.296 3.704 9 O -0.431 6.431 10 N -0.369 5.369 11 C 0.109 3.891 12 H 0.090 0.910 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.139 4.139 16 N -0.534 5.534 17 Si 0.748 3.252 18 H -0.172 1.172 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.390 3.610 22 F -0.173 7.173 23 F -0.170 7.170 24 F -0.165 7.165 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.248 0.752 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.598 -8.220 -8.800 15.399 hybrid contribution -0.189 -0.546 0.844 1.022 sum 9.409 -8.766 -7.956 15.122 Atomic orbital electron populations 1.21673 0.96136 1.01489 1.00836 1.22662 0.95705 0.89888 1.02579 1.68458 1.10427 1.17158 1.24773 1.23937 0.88508 0.98381 1.00496 1.23282 0.92137 0.99475 1.01135 1.23643 0.95220 0.97266 0.95027 0.86605 1.21074 0.84733 0.82457 0.82090 1.90656 1.46918 1.67778 1.37734 1.47050 1.35812 1.38543 1.15498 1.19799 0.89035 0.81842 0.98472 0.91014 1.20723 1.44248 1.00058 0.92971 0.91690 1.25371 0.93109 1.00698 0.94770 1.69953 1.41715 1.34137 1.07589 0.86053 0.79510 0.80663 0.78997 1.17234 1.20764 1.19884 1.21343 0.75495 0.89179 0.75028 1.93157 1.94181 1.96054 1.33867 1.93097 1.64008 1.64861 1.94985 1.93086 1.49656 1.93287 1.80490 0.90318 0.95990 0.93451 0.88535 0.92462 0.88032 0.88230 0.87175 0.90292 0.75159 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 10.07 71.98 0.73 -3.23 16 2 C 0.02 0.44 5.46 86.30 0.47 0.91 16 3 N -0.48 -12.96 5.68 -887.64 -5.05 -18.01 16 4 C 0.01 0.26 7.98 86.41 0.69 0.95 16 5 C -0.12 -2.63 7.83 31.24 0.24 -2.38 16 6 C 0.00 0.03 3.17 44.23 0.14 0.17 16 7 H 0.12 2.83 7.70 -2.39 -0.02 2.82 16 8 C 0.51 19.68 6.50 87.66 0.57 20.25 16 9 O -0.55 -25.64 15.26 -3.04 -0.05 -25.69 16 10 N -0.71 -28.55 3.28 -446.09 -1.46 -30.01 16 11 C 0.21 9.93 1.41 44.25 0.06 9.99 16 12 H 0.07 3.63 6.16 -2.39 -0.01 3.61 16 13 C -0.54 -28.13 8.63 25.60 0.22 -27.91 16 14 H 0.06 3.72 7.91 -2.91 -0.02 3.70 16 15 C 0.07 3.45 5.45 84.65 0.46 3.91 16 16 N -0.90 -49.33 13.96 21.45 0.30 -49.03 16 17 Si 0.92 41.28 26.37 68.60 1.81 43.09 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -13.03 6.38 99.48 0.63 -12.40 16 21 C 0.45 19.87 2.79 71.98 0.20 20.07 16 22 F -0.19 -8.49 15.83 44.97 0.71 -7.78 16 23 F -0.19 -8.56 16.83 44.97 0.76 -7.80 16 24 F -0.18 -7.82 16.97 44.97 0.76 -7.05 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.02 0.72 7.36 -2.38 -0.02 0.70 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.07 7.69 -2.39 -0.02 1.05 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 1.25 7.88 -2.39 -0.02 1.23 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.00 8.09 -2.38 -0.02 1.98 16 34 H 0.41 14.78 8.59 -92.71 -0.80 13.98 16 35 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -64.06 304.47 1.82 -62.24 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.25 Total: 17.31 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 3.79 Total: 22.75 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.21 Total: -97.06 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 9 Polarization: -24.87 SS G_CDS: 2.23 Total: -22.63 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.81 Total: 43.09 kcal Total: -64.06 1.82 -62.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.754 kcal (2) G-P(sol) polarization free energy of solvation -64.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds