Wall clock time and date at job start Tue Mar 31 2020 01:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39909 * 109.47135 * 2 1 4 4 F 1.39903 * 109.47495 * 240.00261 * 2 1 3 5 5 C 1.52999 * 109.47659 * 119.99805 * 2 1 3 6 6 N 1.46497 * 109.47294 * 180.02562 * 5 2 1 7 7 C 1.39411 * 119.99968 * 180.02562 * 6 5 2 8 8 C 1.38726 * 120.22626 * 354.77944 * 7 6 5 9 9 C 1.38457 * 120.15339 * 179.72054 * 8 7 6 10 10 C 1.37989 * 120.70424 * 0.02562 * 9 8 7 11 11 C 1.39154 * 120.13312 * 0.02562 * 10 9 8 12 12 N 1.38143 * 132.74676 * 180.02562 * 11 10 9 13 13 H 0.97003 * 124.69750 * 359.93146 * 12 11 10 14 14 C 1.35667 * 110.60475 * 179.86383 * 12 11 10 15 15 C 1.38956 * 109.24739 * 0.11744 * 14 12 11 16 16 C 1.40906 * 126.93465 * 179.90952 * 15 14 12 17 17 H 1.08001 * 120.00254 * 201.54663 * 16 15 14 18 18 C 1.39681 * 120.00001 * 21.54486 * 16 15 14 19 19 N 1.31081 * 119.99703 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47108 * 119.99999 * 20 18 16 23 23 H 1.48500 * 109.47156 * 239.99441 * 20 18 16 24 24 C 1.39774 * 120.22779 * 174.50042 * 7 6 5 25 25 H 1.09005 * 109.46846 * 299.99453 * 1 2 3 26 26 H 1.08991 * 109.47673 * 60.00095 * 1 2 3 27 27 H 1.09001 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46910 * 60.00367 * 5 2 1 29 29 H 1.09004 * 109.47186 * 300.00628 * 5 2 1 30 30 H 0.96994 * 120.00206 * 0.02562 * 6 5 2 31 31 H 1.08002 * 119.92698 * 359.74922 * 8 7 6 32 32 H 1.08000 * 119.65023 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.93483 * 179.97438 * 10 9 8 34 34 H 1.08000 * 125.37567 * 180.02562 * 14 12 11 35 35 H 0.97005 * 119.99858 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 7 3.5050 -0.7206 1.2494 7 6 4.2022 -1.3246 2.2948 8 6 3.5176 -1.8318 3.3896 9 6 4.2110 -2.4365 4.4243 10 6 5.5862 -2.5431 4.3832 11 6 6.2937 -2.0404 3.2955 12 7 7.6399 -2.0054 2.9878 13 1 8.3444 -2.3642 3.5499 14 6 7.8403 -1.4011 1.7898 15 6 6.6151 -1.0105 1.2632 16 6 6.3916 -0.3500 0.0387 17 1 5.4788 0.2059 -0.1163 18 6 7.3508 -0.4143 -0.9747 19 7 8.4590 -1.0886 -0.7864 20 14 7.0548 0.4618 -2.5976 21 1 5.7379 1.1470 -2.5574 22 1 8.1279 1.4635 -2.8223 23 1 7.0632 -0.5290 -3.7038 24 6 5.5951 -1.4284 2.2443 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6768 -1.7489 1.2492 29 1 1.6767 -0.2074 2.1392 30 1 3.9900 -0.3000 0.5223 31 1 2.4413 -1.7553 3.4348 32 1 3.6699 -2.8283 5.2729 33 1 6.1145 -3.0168 5.1973 34 1 8.8005 -1.2466 1.3202 35 1 9.1252 -1.1330 -1.4900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162233104.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:31 Heat of formation + Delta-G solvation = -72.557084 kcal Electronic energy + Delta-G solvation = -21863.203572 eV Core-core repulsion = 18302.780920 eV Total energy + Delta-G solvation = -3560.422652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.99026 -48.01525 -41.37167 -38.27607 -36.17800 -35.14670 -33.24014 -31.51513 -29.57351 -29.35476 -27.15613 -26.12178 -23.21867 -22.70638 -21.82238 -21.28461 -19.27918 -18.65953 -17.82655 -17.74023 -17.32151 -16.98476 -16.29776 -16.05998 -15.45182 -15.36023 -15.05446 -14.89288 -14.44453 -14.39572 -14.32038 -14.13307 -13.71940 -13.33981 -13.20581 -13.09865 -12.99222 -12.96187 -12.48134 -12.29824 -12.08103 -11.90003 -11.65747 -11.50930 -11.14519 -10.73361 -9.23223 -8.69117 -8.41296 -7.75685 -5.97166 0.82603 1.12545 1.35186 1.36394 1.49531 2.25774 2.34990 2.48147 2.75611 2.95195 3.15981 3.21800 3.44016 3.64721 3.66889 4.35184 4.40125 4.42133 4.53448 4.63375 4.68275 4.83761 4.89526 5.00732 5.03439 5.19615 5.30099 5.40100 5.58274 5.79099 5.95956 6.05198 6.09248 6.48030 6.72048 6.81532 6.88699 7.13716 7.24333 7.44867 8.61470 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.009062 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.899422 B = 3089.125297 C = 5365.230605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.263 3.737 3 F -0.216 7.216 4 F -0.217 7.217 5 C 0.086 3.914 6 N -0.756 5.756 7 C 0.255 3.745 8 C -0.268 4.268 9 C -0.055 4.055 10 C -0.215 4.215 11 C 0.110 3.890 12 N -0.584 5.584 13 H 0.410 0.590 14 C -0.103 4.103 15 C -0.004 4.004 16 C -0.455 4.455 17 H 0.059 0.941 18 C 0.020 3.980 19 N -0.860 5.860 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.272 1.272 24 C -0.228 4.228 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.397 0.603 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.158 0.842 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 -0.413 4.987 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.227 3.773 3 F -0.197 7.197 4 F -0.198 7.198 5 C -0.039 4.039 6 N -0.388 5.388 7 C 0.151 3.849 8 C -0.293 4.293 9 C -0.074 4.074 10 C -0.238 4.238 11 C -0.002 4.002 12 N -0.187 5.187 13 H 0.246 0.754 14 C -0.227 4.227 15 C -0.010 4.010 16 C -0.489 4.489 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.491 5.491 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.197 1.197 24 C -0.238 4.238 25 H 0.133 0.867 26 H 0.107 0.893 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.234 0.766 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.175 0.825 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.058 -0.457 4.825 14.871 hybrid contribution 1.264 0.461 -1.288 1.862 sum -12.795 0.004 3.537 13.275 Atomic orbital electron populations 1.22751 0.86553 1.07473 1.06953 1.22055 0.96912 0.74896 0.83416 1.93004 1.91152 1.38667 1.96871 1.93013 1.91152 1.81205 1.54448 1.22575 0.81668 1.02774 0.96899 1.44807 1.04859 1.63508 1.25605 1.17468 0.88550 0.90848 0.88048 1.20413 0.99739 1.13310 0.95819 1.20693 0.92368 0.96549 0.97818 1.19975 0.94613 1.11092 0.98140 1.18397 0.84105 1.01155 0.96566 1.41276 1.05181 1.53140 1.19114 0.75396 1.22322 0.99469 1.12604 0.88334 1.18296 0.89790 0.99538 0.93378 1.18737 1.03310 1.29040 0.97808 0.92309 1.26338 0.94497 0.95246 1.02724 1.69790 1.07984 1.36512 1.34858 0.85309 0.78913 0.78552 0.77875 1.19209 1.19179 1.19732 1.19345 0.92560 1.11908 0.99941 0.86690 0.89289 0.86919 0.87908 0.87400 0.76596 0.84297 0.83081 0.85566 0.82458 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.38 71.98 0.68 -1.96 16 2 C 0.26 7.01 2.06 30.59 0.06 7.07 16 3 F -0.22 -7.00 16.92 44.97 0.76 -6.24 16 4 F -0.22 -7.29 16.92 44.97 0.76 -6.53 16 5 C 0.09 2.32 4.46 86.38 0.39 2.71 16 6 N -0.76 -30.27 5.58 -339.06 -1.89 -32.17 16 7 C 0.25 11.03 6.67 38.42 0.26 11.29 16 8 C -0.27 -9.26 9.32 22.44 0.21 -9.05 16 9 C -0.05 -1.76 10.00 22.26 0.22 -1.53 16 10 C -0.21 -7.90 10.07 22.43 0.23 -7.67 16 11 C 0.11 5.04 7.23 38.86 0.28 5.32 16 12 N -0.58 -26.59 5.99 -184.92 -1.11 -27.69 16 13 H 0.41 15.15 8.96 -92.71 -0.83 14.32 16 14 C -0.10 -5.57 10.77 84.27 0.91 -4.66 16 15 C 0.00 -0.25 5.98 -19.99 -0.12 -0.37 16 16 C -0.46 -26.24 8.82 23.27 0.21 -26.04 16 17 H 0.06 3.34 5.64 -2.91 -0.02 3.32 16 18 C 0.02 1.07 5.47 85.15 0.47 1.54 16 19 N -0.86 -48.07 10.79 21.79 0.24 -47.84 16 20 Si 0.97 43.10 29.56 68.60 2.03 45.12 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.23 -11.61 6.27 -19.95 -0.13 -11.74 16 25 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 2.37 8.12 -2.39 -0.02 2.35 16 29 H 0.11 2.36 7.75 -2.38 -0.02 2.34 16 30 H 0.40 18.35 5.37 -92.71 -0.50 17.85 16 31 H 0.14 3.71 6.73 -2.91 -0.02 3.69 16 32 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.16 8.85 6.35 -2.91 -0.02 8.83 16 35 H 0.28 14.18 8.30 -92.70 -0.77 13.41 16 Total: -1.00 -70.56 301.39 4.26 -66.30 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -0.18 Total: 44.14 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.65 Total: -35.09 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -2.77 Total: -107.70 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 1.52 Total: -12.77 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -70.56 4.26 -66.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162233104.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.261 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds