Wall clock time and date at job start Tue Mar 31 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47508 * 2 1 4 4 C 1.34804 * 117.00524 * 179.97438 * 3 2 1 5 5 O 1.21556 * 119.99479 * 359.97438 * 4 3 2 6 6 C 1.47068 * 120.00172 * 179.97438 * 4 3 2 7 7 C 1.40288 * 120.55784 * 5.64200 * 6 4 3 8 8 C 1.37916 * 118.43132 * 180.26551 * 7 6 4 9 9 C 1.39305 * 119.48219 * 359.74322 * 8 7 6 10 10 O 1.35480 * 119.44770 * 180.02562 * 9 8 7 11 11 C 1.42903 * 116.99626 * 179.56723 * 10 9 8 12 12 C 1.52998 * 109.46820 * 174.96105 * 11 10 9 13 13 N 1.32253 * 121.10069 * 0.02562 * 9 8 7 14 14 C 1.32459 * 121.70943 * 359.97438 * 13 9 8 15 15 N 1.38170 * 119.80551 * 179.97438 * 14 13 9 16 16 C 1.36894 * 120.00022 * 354.49042 * 15 14 13 17 17 H 1.08000 * 119.99939 * 134.58072 * 16 15 14 18 18 C 1.38875 * 119.99783 * 314.57626 * 16 15 14 19 19 N 1.31507 * 119.99983 * 346.35317 * 18 16 15 20 20 Si 1.86796 * 119.99783 * 166.35050 * 18 16 15 21 21 H 1.48502 * 109.47327 * 90.00199 * 20 18 16 22 22 H 1.48497 * 109.47183 * 210.00278 * 20 18 16 23 23 H 1.48501 * 109.47309 * 330.00380 * 20 18 16 24 24 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47225 * 300.00600 * 1 2 3 26 26 H 1.09000 * 109.46818 * 60.00450 * 1 2 3 27 27 H 1.09001 * 109.47225 * 239.99400 * 2 1 3 28 28 H 1.09001 * 109.47076 * 120.00032 * 2 1 3 29 29 H 1.07998 * 120.78672 * 359.97438 * 7 6 4 30 30 H 1.08003 * 120.25607 * 179.72429 * 8 7 6 31 31 H 1.09000 * 109.47582 * 294.96100 * 11 10 9 32 32 H 1.09000 * 109.47243 * 54.96298 * 11 10 9 33 33 H 1.09000 * 109.47682 * 299.99932 * 12 11 10 34 34 H 1.09003 * 109.47216 * 60.00579 * 12 11 10 35 35 H 1.09005 * 109.47277 * 179.97438 * 12 11 10 36 36 H 0.97003 * 119.99290 * 174.76172 * 15 14 13 37 37 H 0.97000 * 119.99997 * 182.10242 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3504 1.5456 0.0005 5 8 4.0908 0.5815 0.0015 6 6 3.9126 2.9046 0.0000 7 6 3.0742 4.0232 0.1177 8 6 3.6476 5.2775 0.1066 9 6 5.0301 5.3984 -0.0145 10 8 5.5926 6.6308 -0.0248 11 6 7.0154 6.6935 -0.1417 12 6 7.4533 8.1546 -0.2620 13 7 5.8026 4.3301 -0.1195 14 6 5.3003 3.1044 -0.1140 15 7 6.1439 2.0160 -0.2267 16 6 7.4799 2.2064 -0.4567 17 1 8.2104 1.6493 0.1111 18 6 7.8959 3.1159 -1.4202 19 7 7.0328 3.5927 -2.2904 20 14 9.6812 3.6619 -1.4802 21 1 10.4483 2.7502 -2.3664 22 1 9.7577 5.0472 -2.0097 23 1 10.2571 3.6226 -0.1119 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0047 3.9052 0.2100 30 1 3.0294 6.1592 0.1908 31 1 7.4727 6.2488 0.7421 32 1 7.3315 6.1453 -1.0292 33 1 6.9962 8.5994 -1.1459 34 1 7.1373 8.7028 0.6255 35 1 8.5387 8.2025 -0.3508 36 1 5.7888 1.1169 -0.1467 37 1 7.3294 4.2044 -2.9824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:59 Heat of formation + Delta-G solvation = -96.530142 kcal Electronic energy + Delta-G solvation = -22433.879624 eV Core-core repulsion = 18983.504937 eV Total energy + Delta-G solvation = -3450.374687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69634 -40.74402 -39.04515 -37.47585 -36.63161 -33.49271 -33.28239 -32.43374 -32.25439 -30.15457 -26.67010 -25.53581 -24.39176 -23.60446 -22.82433 -22.17188 -19.79737 -19.31519 -18.61163 -17.81390 -17.44849 -17.27960 -17.09258 -16.88734 -16.26447 -15.36682 -15.21022 -14.94422 -14.65543 -14.46566 -14.18810 -13.79239 -13.56477 -13.54146 -13.31067 -13.18002 -12.91925 -12.83571 -12.72199 -12.41989 -12.37185 -12.18419 -11.70275 -11.45770 -11.37374 -11.05294 -10.81632 -10.11752 -9.69697 -8.66002 -8.19841 -6.04514 0.10431 0.97566 1.38925 1.41479 1.50798 1.76342 1.85132 2.25430 2.31207 2.97535 3.26640 3.42518 3.94411 4.06666 4.11663 4.14792 4.18673 4.20149 4.40273 4.41166 4.48006 4.57104 4.72815 4.89100 4.93508 4.98108 4.98277 5.14810 5.18986 5.24624 5.36327 5.42759 5.52299 5.73245 6.15973 6.45056 6.73978 6.92868 7.14819 7.54094 7.99243 8.75439 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.006346 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.073751 B = 4410.876549 C = 5701.572220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.528 3.472 5 O -0.566 6.566 6 C -0.356 4.356 7 C 0.060 3.940 8 C -0.299 4.299 9 C 0.374 3.626 10 O -0.312 6.312 11 C 0.064 3.936 12 C -0.140 4.140 13 N -0.565 5.565 14 C 0.452 3.548 15 N -0.533 5.533 16 C -0.370 4.370 17 H 0.083 0.917 18 C 0.038 3.962 19 N -0.858 5.858 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.264 1.264 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.171 0.829 30 H 0.158 0.842 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.396 0.604 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 3.057 3.712 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.380 3.620 5 O -0.460 6.460 6 C -0.367 4.367 7 C 0.036 3.964 8 C -0.323 4.323 9 C 0.183 3.817 10 O -0.218 6.218 11 C -0.012 4.012 12 C -0.196 4.196 13 N -0.298 5.298 14 C 0.206 3.794 15 N -0.151 5.151 16 C -0.499 4.499 17 H 0.101 0.899 18 C -0.170 4.170 19 N -0.491 5.491 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.188 1.188 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.188 0.812 30 H 0.175 0.825 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.241 0.759 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.224 3.075 3.453 8.577 hybrid contribution 0.405 -0.682 -0.329 0.859 sum -6.819 2.393 3.123 7.873 Atomic orbital electron populations 1.21801 0.89703 1.04416 1.03828 1.23280 0.97391 0.79415 1.02113 1.86525 1.22474 1.33396 1.84677 1.20759 0.80585 0.89029 0.71617 1.90435 1.60079 1.43671 1.51855 1.19035 0.92795 0.91764 1.33079 1.21378 0.99914 0.89196 0.85935 1.20659 0.91249 0.99230 1.21170 1.20259 0.90095 0.84253 0.87074 1.86103 1.24525 1.24266 1.86907 1.22612 0.77969 0.99632 1.00975 1.21797 1.02206 0.91924 1.03719 1.66840 1.38905 0.97700 1.26376 1.18117 0.86375 0.86817 0.88047 1.41469 1.07193 1.05478 1.60927 1.19589 0.82466 1.27679 1.20145 0.89938 1.26006 1.02441 0.95700 0.92875 1.69965 1.36882 1.28655 1.13550 0.85336 0.78334 0.78153 0.78882 1.19763 1.19728 1.18844 0.87995 0.90860 0.91330 0.92242 0.91546 0.81180 0.82481 0.93234 0.94055 0.91394 0.90298 0.89127 0.75856 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.73 16 2 C 0.05 1.39 6.20 71.98 0.45 1.84 16 3 O -0.35 -12.21 9.55 -57.16 -0.55 -12.75 16 4 C 0.53 22.79 7.87 70.14 0.55 23.34 16 5 O -0.57 -26.84 13.45 19.65 0.26 -26.57 16 6 C -0.36 -16.34 5.91 -19.87 -0.12 -16.46 16 7 C 0.06 2.26 9.72 22.69 0.22 2.48 16 8 C -0.30 -11.44 10.01 22.45 0.22 -11.21 16 9 C 0.37 16.94 7.49 84.89 0.64 17.58 16 10 O -0.31 -12.77 10.10 -87.80 -0.89 -13.66 16 11 C 0.06 2.44 6.08 71.98 0.44 2.88 16 12 C -0.14 -3.75 10.28 71.98 0.74 -3.01 16 13 N -0.56 -29.32 6.17 -305.55 -1.89 -31.21 16 14 C 0.45 23.94 6.61 133.71 0.88 24.83 16 15 N -0.53 -29.67 5.19 -188.56 -0.98 -30.65 16 16 C -0.37 -20.81 10.02 84.06 0.84 -19.97 16 17 H 0.08 4.49 7.87 -2.91 -0.02 4.47 16 18 C 0.04 2.05 4.46 84.89 0.38 2.43 16 19 N -0.86 -48.83 11.58 21.66 0.25 -48.58 16 20 Si 0.97 42.33 29.57 68.60 2.03 44.36 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.17 4.93 7.70 -2.91 -0.02 4.90 16 30 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.84 7.95 -2.39 -0.02 1.82 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.40 21.61 5.31 -94.87 -0.50 21.11 16 37 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -67.60 320.34 4.82 -62.79 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.58 Total: 33.27 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 5.98 Total: 23.00 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -2.61 Total: -110.44 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.17 Total: -52.98 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -67.60 4.82 -62.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.744 kcal (2) G-P(sol) polarization free energy of solvation -67.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds