Wall clock time and date at job start Tue Mar 31 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47038 * 2 1 4 4 C 1.35482 * 117.00108 * 179.97438 * 3 2 1 5 5 C 1.39301 * 119.44966 * 179.72463 * 4 3 2 6 6 C 1.37918 * 119.47959 * 179.75091 * 5 4 3 7 7 C 1.40287 * 118.42912 * 0.51149 * 6 5 4 8 8 C 1.47078 * 120.55376 * 179.70683 * 7 6 5 9 9 O 1.21563 * 119.99699 * 185.29016 * 8 7 6 10 10 O 1.34799 * 120.00092 * 5.29175 * 8 7 6 11 11 C 1.45206 * 117.00284 * 179.97438 * 10 8 7 12 12 C 1.40658 * 118.89126 * 359.73583 * 7 6 5 13 13 N 1.38170 * 119.80724 * 179.97438 * 12 7 6 14 14 C 1.46501 * 119.99992 * 266.20581 * 13 12 7 15 15 C 1.36898 * 120.00039 * 86.21048 * 13 12 7 16 16 H 1.07998 * 120.00164 * 2.04590 * 15 13 12 17 17 C 1.38873 * 120.00224 * 182.05178 * 15 13 12 18 18 N 1.31510 * 119.99678 * 351.73057 * 17 15 13 19 19 Si 1.86802 * 120.00331 * 171.73281 * 17 15 13 20 20 H 1.48495 * 109.47013 * 89.99958 * 19 17 15 21 21 H 1.48499 * 109.46882 * 209.99837 * 19 17 15 22 22 H 1.48501 * 109.46659 * 329.99697 * 19 17 15 23 23 N 1.32253 * 119.44424 * 359.97438 * 4 3 2 24 24 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47510 * 300.00422 * 1 2 3 26 26 H 1.09005 * 109.47007 * 60.00423 * 1 2 3 27 27 H 1.08998 * 109.47027 * 239.99517 * 2 1 3 28 28 H 1.09002 * 109.46494 * 119.99581 * 2 1 3 29 29 H 1.08006 * 120.25957 * 359.97438 * 5 4 3 30 30 H 1.08000 * 120.78167 * 180.22392 * 6 5 4 31 31 H 1.09000 * 109.47385 * 180.02562 * 11 10 8 32 32 H 1.09009 * 109.46961 * 300.00374 * 11 10 8 33 33 H 1.08998 * 109.46977 * 59.99908 * 11 10 8 34 34 H 1.08995 * 109.47050 * 0.74223 * 14 13 12 35 35 H 1.09004 * 109.46331 * 120.73487 * 14 13 12 36 36 H 1.08992 * 109.47268 * 240.73794 * 14 13 12 37 37 H 0.97003 * 120.00319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8695 2.8171 -0.0053 6 6 5.2366 2.9986 0.0005 7 6 6.0611 1.8636 0.0011 8 6 7.5252 2.0029 0.0007 9 8 8.2296 1.0169 -0.0959 10 8 8.0861 3.2240 0.1074 11 6 9.5368 3.2861 0.1006 12 6 5.4640 0.5900 0.0015 13 7 6.2580 -0.5408 0.0016 14 6 6.6099 -1.1888 -1.2643 15 6 6.7157 -1.0557 1.1845 16 1 6.4293 -0.5977 2.1197 17 6 7.5486 -2.1670 1.1822 18 7 7.7671 -2.8225 0.0632 19 14 8.3584 -2.7308 2.7683 20 1 7.4737 -3.7046 3.4568 21 1 9.6588 -3.3771 2.4575 22 1 8.5866 -1.5588 3.6512 23 7 4.1449 0.4683 0.0015 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2072 3.6703 -0.0106 30 1 5.6625 3.9911 -0.0002 31 1 9.8565 4.3240 0.1930 32 1 9.9291 2.7094 0.9383 33 1 9.9138 2.8713 -0.8343 34 1 6.1688 -0.6332 -2.0918 35 1 7.6942 -1.2052 -1.3749 36 1 6.2288 -2.2099 -1.2681 37 1 8.3491 -3.5985 0.0614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:46 Heat of formation + Delta-G solvation = -36.354676 kcal Electronic energy + Delta-G solvation = -22519.243191 eV Core-core repulsion = 19071.477908 eV Total energy + Delta-G solvation = -3447.765283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.28313 -39.28123 -37.72023 -35.75009 -35.11042 -32.14070 -31.91712 -30.92226 -29.06763 -27.14514 -26.10149 -24.24055 -23.94140 -22.27951 -21.11193 -20.49741 -18.09685 -17.35878 -16.97287 -16.37275 -15.97496 -15.84435 -15.61185 -15.04155 -13.93197 -13.88627 -13.74191 -13.65726 -13.15708 -12.96689 -12.63972 -12.42150 -12.33354 -11.94999 -11.74994 -11.55565 -11.34077 -11.24248 -10.81205 -10.61796 -10.36676 -10.22107 -10.16179 -10.02320 -9.58594 -9.32041 -9.13130 -8.64068 -7.90409 -7.24700 -5.83892 -3.20585 1.28521 1.78377 3.25024 3.33382 3.36378 3.38418 3.40862 3.42337 4.25658 4.41423 4.74112 5.17438 5.18420 5.23771 5.32876 5.43070 5.46576 5.53171 5.54996 5.60043 5.63269 5.82494 5.93231 5.98109 6.04451 6.11930 6.35921 6.49825 6.66283 6.82037 7.03599 7.53310 7.58898 7.68625 7.83701 8.24296 8.55963 8.67200 9.04337 9.71955 10.04396 11.14119 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.007580 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.492111 B = 3693.044563 C = 5301.481665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.313 6.313 4 C 0.354 3.646 5 C -0.239 4.239 6 C 0.012 3.988 7 C -0.236 4.236 8 C 0.496 3.504 9 O -0.450 6.450 10 O -0.375 6.375 11 C 0.042 3.958 12 C 0.488 3.512 13 N -0.524 5.524 14 C 0.176 3.824 15 C -0.232 4.232 16 H 0.075 0.925 17 C 0.015 3.985 18 N -0.893 5.893 19 Si 0.917 3.083 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.279 1.279 23 N -0.559 5.559 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.057 0.943 34 H -0.009 1.009 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 10.557 -1.301 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.220 6.220 4 C 0.170 3.830 5 C -0.261 4.261 6 C -0.014 4.014 7 C -0.245 4.245 8 C 0.338 3.662 9 O -0.334 6.334 10 O -0.293 6.293 11 C -0.052 4.052 12 C 0.257 3.743 13 N -0.239 5.239 14 C 0.033 3.967 15 C -0.359 4.359 16 H 0.093 0.907 17 C -0.184 4.184 18 N -0.536 5.536 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.211 1.211 22 H -0.204 1.204 23 N -0.288 5.288 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.010 0.990 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.287 9.293 -1.381 11.304 hybrid contribution 1.014 0.219 0.877 1.358 sum -5.273 9.512 -0.505 10.887 Atomic orbital electron populations 1.21808 0.93530 1.02596 1.02820 1.22556 0.94025 0.81302 1.03106 1.86120 1.17816 1.30650 1.87444 1.20007 0.83560 0.90022 0.89363 1.20694 0.95270 0.95171 1.14958 1.21461 0.91958 0.98390 0.89572 1.20390 0.90555 0.95194 1.18341 1.20663 0.88967 0.80948 0.75614 1.91018 1.62840 1.37470 1.42058 1.86508 1.23471 1.33631 1.85719 1.23058 0.77553 1.02285 1.02330 1.17701 0.84949 0.87161 0.84528 1.41358 1.50793 1.25907 1.05882 1.21227 0.99801 0.94922 0.80707 1.19105 1.24634 1.08323 0.83814 0.90682 1.24869 0.98584 0.97296 0.97683 1.70186 1.38832 1.19610 1.24965 0.86074 0.78937 0.78423 0.82024 1.21181 1.21139 1.20392 1.67851 1.07169 1.32541 1.21241 0.90553 0.91935 0.91955 0.91529 0.91381 0.84607 0.83904 0.89041 0.92275 0.92413 0.98987 0.91960 0.92861 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.24 16 2 C 0.07 0.98 6.02 37.16 0.22 1.20 16 3 O -0.31 -5.23 10.10 -18.14 -0.18 -5.41 16 4 C 0.35 6.62 7.49 -16.98 -0.13 6.49 16 5 C -0.24 -3.84 10.01 -39.30 -0.39 -4.23 16 6 C 0.01 0.19 9.72 -38.93 -0.38 -0.18 16 7 C -0.24 -4.95 5.91 -104.63 -0.62 -5.56 16 8 C 0.50 10.63 7.87 34.32 0.27 10.90 16 9 O -0.45 -11.30 13.40 -19.31 -0.26 -11.56 16 10 O -0.37 -6.56 9.89 -40.76 -0.40 -6.96 16 11 C 0.04 0.59 10.57 101.05 1.07 1.66 16 12 C 0.49 11.60 5.93 -155.19 -0.92 10.68 16 13 N -0.52 -14.02 1.64 -122.18 -0.20 -14.22 16 14 C 0.18 4.65 8.40 59.85 0.50 5.15 16 15 C -0.23 -6.57 8.79 -15.05 -0.13 -6.70 16 16 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 17 C 0.01 0.42 5.43 -17.45 -0.09 0.32 16 18 N -0.89 -25.65 9.48 55.49 0.53 -25.13 16 19 Si 0.92 22.20 29.56 -169.99 -5.03 17.18 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 N -0.56 -12.36 9.20 -12.22 -0.11 -12.47 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 28 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.14 1.90 7.70 -52.49 -0.40 1.50 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H -0.01 -0.21 7.90 -51.93 -0.41 -0.62 16 35 H 0.06 1.77 6.88 -51.93 -0.36 1.41 16 36 H 0.05 1.48 6.97 -51.93 -0.36 1.12 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -32.01 319.70 -5.94 -37.95 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.88 Total: -2.67 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: -0.22 Total: 18.47 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.21 Total: -51.81 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.85 Total: -23.93 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.01 -5.94 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.594 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds