Wall clock time and date at job start Tue Mar 31 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47038 * 2 1 4 4 C 1.35482 * 117.00108 * 179.97438 * 3 2 1 5 5 C 1.39301 * 119.44966 * 179.72463 * 4 3 2 6 6 C 1.37918 * 119.47959 * 179.75091 * 5 4 3 7 7 C 1.40287 * 118.42912 * 0.51149 * 6 5 4 8 8 C 1.47078 * 120.55376 * 179.70683 * 7 6 5 9 9 O 1.21563 * 119.99699 * 185.29016 * 8 7 6 10 10 O 1.34799 * 120.00092 * 5.29175 * 8 7 6 11 11 C 1.45206 * 117.00284 * 179.97438 * 10 8 7 12 12 C 1.40658 * 118.89126 * 359.73583 * 7 6 5 13 13 N 1.38170 * 119.80724 * 179.97438 * 12 7 6 14 14 C 1.46501 * 119.99992 * 266.20581 * 13 12 7 15 15 C 1.36898 * 120.00039 * 86.21048 * 13 12 7 16 16 H 1.07998 * 120.00164 * 2.04590 * 15 13 12 17 17 C 1.38873 * 120.00224 * 182.05178 * 15 13 12 18 18 N 1.31510 * 119.99678 * 351.73057 * 17 15 13 19 19 Si 1.86802 * 120.00331 * 171.73281 * 17 15 13 20 20 H 1.48495 * 109.47013 * 89.99958 * 19 17 15 21 21 H 1.48499 * 109.46882 * 209.99837 * 19 17 15 22 22 H 1.48501 * 109.46659 * 329.99697 * 19 17 15 23 23 N 1.32253 * 119.44424 * 359.97438 * 4 3 2 24 24 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47510 * 300.00422 * 1 2 3 26 26 H 1.09005 * 109.47007 * 60.00423 * 1 2 3 27 27 H 1.08998 * 109.47027 * 239.99517 * 2 1 3 28 28 H 1.09002 * 109.46494 * 119.99581 * 2 1 3 29 29 H 1.08006 * 120.25957 * 359.97438 * 5 4 3 30 30 H 1.08000 * 120.78167 * 180.22392 * 6 5 4 31 31 H 1.09000 * 109.47385 * 180.02562 * 11 10 8 32 32 H 1.09009 * 109.46961 * 300.00374 * 11 10 8 33 33 H 1.08998 * 109.46977 * 59.99908 * 11 10 8 34 34 H 1.08995 * 109.47050 * 0.74223 * 14 13 12 35 35 H 1.09004 * 109.46331 * 120.73487 * 14 13 12 36 36 H 1.08992 * 109.47268 * 240.73794 * 14 13 12 37 37 H 0.97003 * 120.00319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8695 2.8171 -0.0053 6 6 5.2366 2.9986 0.0005 7 6 6.0611 1.8636 0.0011 8 6 7.5252 2.0029 0.0007 9 8 8.2296 1.0169 -0.0959 10 8 8.0861 3.2240 0.1074 11 6 9.5368 3.2861 0.1006 12 6 5.4640 0.5900 0.0015 13 7 6.2580 -0.5408 0.0016 14 6 6.6099 -1.1888 -1.2643 15 6 6.7157 -1.0557 1.1845 16 1 6.4293 -0.5977 2.1197 17 6 7.5486 -2.1670 1.1822 18 7 7.7671 -2.8225 0.0632 19 14 8.3584 -2.7308 2.7683 20 1 7.4737 -3.7046 3.4568 21 1 9.6588 -3.3771 2.4575 22 1 8.5866 -1.5588 3.6512 23 7 4.1449 0.4683 0.0015 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2072 3.6703 -0.0106 30 1 5.6625 3.9911 -0.0002 31 1 9.8565 4.3240 0.1930 32 1 9.9291 2.7094 0.9383 33 1 9.9138 2.8713 -0.8343 34 1 6.1688 -0.6332 -2.0918 35 1 7.6942 -1.2052 -1.3749 36 1 6.2288 -2.2099 -1.2681 37 1 8.3491 -3.5985 0.0614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:45 Heat of formation + Delta-G solvation = -57.547110 kcal Electronic energy + Delta-G solvation = -22520.162164 eV Core-core repulsion = 19071.477908 eV Total energy + Delta-G solvation = -3448.684256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88387 -40.81766 -39.24182 -37.42469 -36.84570 -33.83990 -33.39115 -32.43129 -30.63575 -28.47187 -28.14102 -25.98116 -25.35406 -23.71327 -22.72327 -22.06276 -19.69466 -19.01636 -18.67418 -18.00197 -17.56390 -17.32798 -17.09398 -16.75286 -15.74321 -15.43335 -15.24913 -15.04164 -14.60777 -14.44873 -14.10135 -14.00136 -13.73258 -13.36465 -13.26936 -13.03157 -12.82542 -12.74151 -12.56757 -12.47710 -12.19166 -12.06540 -11.65467 -11.61636 -11.29250 -10.90902 -10.82679 -10.60268 -9.46957 -9.23085 -7.84891 -5.32756 -0.29760 0.28245 1.39168 1.42486 1.50642 1.72924 1.81691 2.03083 2.38267 2.80954 2.98584 3.27753 3.83153 3.90796 4.06395 4.07887 4.12492 4.26279 4.38563 4.39716 4.43783 4.49498 4.66629 4.69707 4.83739 4.93942 4.96749 5.04826 5.21668 5.33349 5.45119 5.45840 5.49468 5.72550 6.12863 6.26404 6.90478 7.03287 7.05629 7.75498 8.09439 9.14399 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.007580 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.492111 B = 3693.044563 C = 5301.481665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 O -0.304 6.304 4 C 0.344 3.656 5 C -0.206 4.206 6 C 0.028 3.972 7 C -0.247 4.247 8 C 0.500 3.500 9 O -0.493 6.493 10 O -0.361 6.361 11 C 0.035 3.965 12 C 0.473 3.527 13 N -0.554 5.554 14 C 0.207 3.793 15 C -0.247 4.247 16 H 0.062 0.938 17 C -0.037 4.037 18 N -0.932 5.932 19 Si 0.974 3.026 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.277 1.277 23 N -0.589 5.589 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.187 0.813 30 H 0.190 0.810 31 H 0.142 0.858 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.002 0.998 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 14.406 -0.874 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 O -0.211 6.211 4 C 0.162 3.838 5 C -0.226 4.226 6 C 0.003 3.997 7 C -0.255 4.255 8 C 0.343 3.657 9 O -0.380 6.380 10 O -0.278 6.278 11 C -0.058 4.058 12 C 0.245 3.755 13 N -0.274 5.274 14 C 0.063 3.937 15 C -0.375 4.375 16 H 0.080 0.920 17 C -0.232 4.232 18 N -0.578 5.578 19 Si 0.801 3.199 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.318 5.318 24 H 0.112 0.888 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.207 0.793 31 H 0.160 0.840 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.173 13.255 -0.944 15.601 hybrid contribution 1.307 -0.570 0.669 1.575 sum -6.866 12.685 -0.275 14.427 Atomic orbital electron populations 1.21798 0.89834 1.04163 1.03867 1.22733 0.96835 0.80295 1.01530 1.86162 1.16451 1.31544 1.86951 1.20509 0.84152 0.90461 0.88650 1.21299 0.95694 0.95326 1.10276 1.21934 0.91626 0.98762 0.87391 1.20595 0.91257 0.95672 1.17977 1.20855 0.89188 0.81445 0.74163 1.91030 1.63868 1.39205 1.43910 1.86479 1.25549 1.31022 1.84790 1.23434 0.75297 1.05280 1.01791 1.18016 0.85290 0.87383 0.84828 1.41174 1.53332 1.27890 1.04962 1.20654 0.97772 0.93639 0.81594 1.19058 1.24911 1.09384 0.84187 0.91968 1.25534 0.99612 0.97592 1.00442 1.70331 1.40642 1.20473 1.26398 0.85190 0.77920 0.77881 0.78885 1.20570 1.21187 1.20206 1.67647 1.07116 1.34907 1.22138 0.88798 0.90936 0.90758 0.92969 0.93262 0.79604 0.79310 0.84028 0.93370 0.92740 0.97907 0.95093 0.95424 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.06 1.76 6.02 71.98 0.43 2.19 16 3 O -0.30 -9.31 10.10 -87.81 -0.89 -10.20 16 4 C 0.34 11.96 7.49 84.89 0.64 12.59 16 5 C -0.21 -5.52 10.01 22.45 0.22 -5.29 16 6 C 0.03 0.79 9.72 22.69 0.22 1.01 16 7 C -0.25 -9.98 5.91 -19.87 -0.12 -10.10 16 8 C 0.50 21.05 7.87 70.14 0.55 21.60 16 9 O -0.49 -25.46 13.40 19.63 0.26 -25.19 16 10 O -0.36 -11.63 9.89 -57.11 -0.57 -12.19 16 11 C 0.04 0.91 10.57 113.37 1.20 2.11 16 12 C 0.47 22.70 5.93 133.70 0.79 23.49 16 13 N -0.55 -30.99 1.64 -540.48 -0.89 -31.87 16 14 C 0.21 11.63 8.40 127.77 1.07 12.71 16 15 C -0.25 -14.77 8.79 84.05 0.74 -14.03 16 16 H 0.06 3.71 7.84 -2.91 -0.02 3.69 16 17 C -0.04 -2.20 5.43 84.89 0.46 -1.74 16 18 N -0.93 -57.17 9.48 21.66 0.21 -56.96 16 19 Si 0.97 47.82 29.56 68.60 2.03 49.84 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 N -0.59 -25.95 9.20 -305.56 -2.81 -28.76 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 28 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 29 H 0.19 3.29 8.06 -2.91 -0.02 3.26 16 30 H 0.19 3.72 7.70 -2.91 -0.02 3.70 16 31 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.00 0.12 7.90 -2.39 -0.02 0.10 16 35 H 0.03 1.88 6.88 -2.39 -0.02 1.86 16 36 H 0.03 1.65 6.97 -2.39 -0.02 1.63 16 37 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -75.94 319.70 5.37 -70.56 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.07 Total: 2.14 kcal Atomic # 6 Polarization: 35.68 SS G_CDS: 6.95 Total: 42.64 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -3.49 Total: -117.59 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.19 Total: -47.59 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -75.94 5.37 -70.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.016 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds