Wall clock time and date at job start Tue Mar 31 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00394 * 2 1 4 4 C 1.38759 * 120.05250 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94574 * 179.74499 * 4 3 2 6 6 C 1.38290 * 120.05326 * 0.24867 * 5 4 3 7 7 C 1.50707 * 119.94520 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46908 * 101.88676 * 7 6 5 9 9 H 1.09001 * 109.46930 * 54.29167 * 8 7 6 10 10 C 1.53005 * 109.46787 * 174.28604 * 8 7 6 11 11 N 1.46492 * 109.47591 * 294.28821 * 8 7 6 12 12 C 1.36941 * 120.00317 * 157.93268 * 11 8 7 13 13 H 1.08003 * 119.99693 * 0.02562 * 12 11 8 14 14 C 1.38811 * 120.00139 * 179.97438 * 12 11 8 15 15 N 1.31618 * 120.00124 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47288 * 60.00055 * 16 14 12 18 18 H 1.48496 * 109.47030 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46978 * 300.00008 * 16 14 12 20 20 C 1.38243 * 120.11254 * 359.97438 * 6 5 4 21 21 N 1.48011 * 119.97372 * 180.02562 * 20 6 5 22 22 O 1.21794 * 120.00099 * 175.59810 * 21 20 6 23 23 O 1.21798 * 119.99415 * 355.60287 * 21 20 6 24 24 C 1.38167 * 120.05606 * 0.02620 * 20 6 5 25 25 H 1.08999 * 109.46865 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46926 * 299.99776 * 1 2 3 27 27 H 1.08998 * 109.47130 * 59.99757 * 1 2 3 28 28 H 1.07999 * 120.02408 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.97481 * 180.22722 * 5 4 3 30 30 H 1.08998 * 109.47324 * 221.89021 * 7 6 5 31 31 H 1.09003 * 109.46630 * 341.88928 * 7 6 5 32 32 H 1.09001 * 109.46926 * 60.00560 * 10 8 7 33 33 H 1.09002 * 109.46598 * 180.02562 * 10 8 7 34 34 H 1.08999 * 109.47011 * 300.00559 * 10 8 7 35 35 H 0.97005 * 119.99853 * 337.93403 * 11 8 7 36 36 H 0.97000 * 119.99841 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.02673 * 180.02562 * 24 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0059 6 6 3.3019 3.6757 0.0055 7 6 3.9862 5.0185 0.0119 8 6 4.4832 5.3308 1.4248 9 1 5.1088 4.5115 1.7792 10 6 5.3005 6.6241 1.4036 11 7 3.3361 5.4926 2.3214 12 6 3.4938 5.3276 3.6717 13 1 4.4640 5.0785 4.0756 14 6 2.4070 5.4815 4.5213 15 7 1.2247 5.7855 4.0292 16 14 2.6223 5.2571 6.3633 17 1 3.6149 6.2391 6.8689 18 1 1.3203 5.4733 7.0438 19 1 3.1029 3.8797 6.6412 20 6 4.0560 2.5171 0.0003 21 7 5.5340 2.5966 0.0004 22 8 6.1986 1.5789 0.0768 23 8 6.0854 3.6799 -0.0758 24 6 3.4311 1.2848 -0.0051 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2129 2.3203 0.0014 29 1 1.3340 4.5113 0.0100 30 1 4.8324 4.9984 -0.6749 31 1 3.2806 5.7872 -0.3033 32 1 4.6750 7.4434 1.0491 33 1 5.6550 6.8464 2.4101 34 1 6.1540 6.5037 0.7364 35 1 2.4648 5.7167 1.9587 36 1 0.4653 5.8934 4.6230 37 1 4.0207 0.3799 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170298151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:38 Heat of formation + Delta-G solvation = -1.040953 kcal Electronic energy + Delta-G solvation = -22465.938182 eV Core-core repulsion = 19019.704217 eV Total energy + Delta-G solvation = -3446.233965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99432 -40.24208 -38.07830 -36.45364 -35.57932 -32.60055 -31.80574 -30.88921 -28.72780 -27.92049 -26.31451 -25.39290 -23.72748 -22.52848 -21.72461 -19.98051 -19.12108 -18.38948 -17.26994 -17.21641 -16.98760 -16.39610 -15.92841 -15.55558 -14.85550 -14.16613 -13.90751 -13.70357 -13.59960 -12.97806 -12.75135 -12.57379 -12.26282 -11.94729 -11.63205 -11.42468 -11.26433 -11.09962 -10.99149 -10.87956 -10.81310 -10.57298 -10.35694 -10.16869 -9.99036 -9.64013 -9.44193 -8.91656 -8.27892 -6.96723 -5.79228 -3.06224 0.10518 1.19252 1.59799 1.67761 3.07011 3.42591 3.44256 3.46435 3.48400 4.51477 4.58237 4.69349 4.72882 4.83536 4.96076 5.01129 5.11902 5.27811 5.52911 5.53607 5.57022 5.71484 5.81464 5.97492 6.04247 6.14864 6.22890 6.28987 6.40233 6.52199 6.67426 6.85680 6.95335 7.08947 7.13807 7.70103 8.00153 8.40323 9.51682 10.08242 10.44091 11.43580 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.007039 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.443585 B = 3976.893830 C = 5207.203216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.117 3.883 4 C -0.148 4.148 5 C -0.062 4.062 6 C -0.017 4.017 7 C -0.104 4.104 8 C 0.185 3.815 9 H 0.043 0.957 10 C -0.159 4.159 11 N -0.725 5.725 12 C -0.232 4.232 13 H 0.068 0.932 14 C -0.013 4.013 15 N -0.935 5.935 16 Si 0.903 3.097 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.287 1.287 20 C -0.010 4.010 21 N 0.037 4.963 22 O -0.181 6.181 23 O -0.143 6.143 24 C -0.095 4.095 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.381 0.619 36 H 0.254 0.746 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -7.734 -12.282 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.071 3.929 4 C -0.167 4.167 5 C -0.081 4.081 6 C -0.019 4.019 7 C -0.142 4.142 8 C 0.075 3.925 9 H 0.061 0.939 10 C -0.219 4.219 11 N -0.367 5.367 12 C -0.363 4.363 13 H 0.086 0.914 14 C -0.209 4.209 15 N -0.584 5.584 16 Si 0.734 3.266 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.093 4.093 21 N 0.554 4.446 22 O -0.391 6.391 23 O -0.361 6.361 24 C -0.115 4.115 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.215 0.785 36 H 0.063 0.937 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.288 -8.053 -12.100 14.714 hybrid contribution -0.226 0.073 1.180 1.204 sum -2.514 -7.980 -10.920 13.757 Atomic orbital electron populations 1.23141 0.77751 1.04285 1.01799 1.86057 1.21784 1.25874 1.88912 1.18451 0.90956 0.84886 0.98645 1.21645 1.01081 0.92041 1.01901 1.20936 0.92477 0.98245 0.96396 1.19795 0.93615 0.94590 0.93895 1.21442 1.00844 0.90960 1.00960 1.20121 0.89822 0.95555 0.86983 0.93859 1.22330 0.99227 0.99156 1.01169 1.42471 1.06650 1.84482 1.03136 1.19183 0.94713 1.39291 0.83160 0.91432 1.24665 0.95611 1.02837 0.97764 1.69631 0.99472 1.55461 1.33877 0.86323 0.76570 0.77931 0.85758 1.21213 1.21729 1.21423 1.20440 0.79246 0.95495 1.14126 1.43427 1.03385 1.00289 0.97501 1.94502 1.64348 1.25904 1.54344 1.94482 1.73633 1.15828 1.52158 1.19852 0.92453 0.97141 1.02031 0.87922 0.92035 0.92445 0.83939 0.83256 0.87863 0.90580 0.93596 0.92812 0.93591 0.78544 0.93650 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.91 10.50 -19.42 -0.20 -4.11 16 3 C 0.12 1.63 6.69 -39.22 -0.26 1.37 16 4 C -0.15 -1.97 9.04 -39.43 -0.36 -2.33 16 5 C -0.06 -0.93 9.66 -39.61 -0.38 -1.31 16 6 C -0.02 -0.29 4.89 -104.60 -0.51 -0.80 16 7 C -0.10 -1.73 4.14 -27.88 -0.12 -1.85 16 8 C 0.18 3.76 2.26 -67.93 -0.15 3.61 16 9 H 0.04 0.97 6.70 -51.93 -0.35 0.63 16 10 C -0.16 -2.98 9.46 37.16 0.35 -2.62 16 11 N -0.73 -17.68 4.88 -53.43 -0.26 -17.94 16 12 C -0.23 -6.44 9.91 -15.06 -0.15 -6.59 16 13 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.94 -27.35 13.06 55.49 0.72 -26.63 16 16 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 C -0.01 -0.16 6.76 -79.98 -0.54 -0.70 16 21 N 0.04 0.66 4.37 33.95 0.15 0.81 16 22 O -0.18 -3.28 18.45 -29.46 -0.54 -3.82 16 23 O -0.14 -2.59 13.67 -29.46 -0.40 -2.99 16 24 C -0.10 -1.46 9.50 -39.43 -0.37 -1.83 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.14 1.48 6.30 -52.49 -0.33 1.15 16 29 H 0.15 2.07 8.02 -52.49 -0.42 1.65 16 30 H 0.10 1.61 5.88 -51.93 -0.31 1.30 16 31 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.38 9.54 7.77 -40.82 -0.32 9.23 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 37 H 0.15 2.18 7.62 -52.49 -0.40 1.78 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -31.51 317.72 -6.94 -38.45 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.57 Total: 6.23 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.60 Total: -12.32 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.61 Total: -43.76 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.15 Total: -10.93 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.51 -6.94 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170298151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.407 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds