Wall clock time and date at job start Tue Mar 31 2020 01:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00394 * 2 1 4 4 C 1.38759 * 120.05250 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94574 * 179.74499 * 4 3 2 6 6 C 1.38290 * 120.05326 * 0.24867 * 5 4 3 7 7 C 1.50707 * 119.94520 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46908 * 101.88676 * 7 6 5 9 9 H 1.09001 * 109.46930 * 54.29167 * 8 7 6 10 10 C 1.53005 * 109.46787 * 174.28604 * 8 7 6 11 11 N 1.46492 * 109.47591 * 294.28821 * 8 7 6 12 12 C 1.36941 * 120.00317 * 157.93268 * 11 8 7 13 13 H 1.08003 * 119.99693 * 0.02562 * 12 11 8 14 14 C 1.38811 * 120.00139 * 179.97438 * 12 11 8 15 15 N 1.31618 * 120.00124 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47288 * 60.00055 * 16 14 12 18 18 H 1.48496 * 109.47030 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46978 * 300.00008 * 16 14 12 20 20 C 1.38243 * 120.11254 * 359.97438 * 6 5 4 21 21 N 1.48011 * 119.97372 * 180.02562 * 20 6 5 22 22 O 1.21794 * 120.00099 * 175.59810 * 21 20 6 23 23 O 1.21798 * 119.99415 * 355.60287 * 21 20 6 24 24 C 1.38167 * 120.05606 * 0.02620 * 20 6 5 25 25 H 1.08999 * 109.46865 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46926 * 299.99776 * 1 2 3 27 27 H 1.08998 * 109.47130 * 59.99757 * 1 2 3 28 28 H 1.07999 * 120.02408 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.97481 * 180.22722 * 5 4 3 30 30 H 1.08998 * 109.47324 * 221.89021 * 7 6 5 31 31 H 1.09003 * 109.46630 * 341.88928 * 7 6 5 32 32 H 1.09001 * 109.46926 * 60.00560 * 10 8 7 33 33 H 1.09002 * 109.46598 * 180.02562 * 10 8 7 34 34 H 1.08999 * 109.47011 * 300.00559 * 10 8 7 35 35 H 0.97005 * 119.99853 * 337.93403 * 11 8 7 36 36 H 0.97000 * 119.99841 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.02673 * 180.02562 * 24 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0059 6 6 3.3019 3.6757 0.0055 7 6 3.9862 5.0185 0.0119 8 6 4.4832 5.3308 1.4248 9 1 5.1088 4.5115 1.7792 10 6 5.3005 6.6241 1.4036 11 7 3.3361 5.4926 2.3214 12 6 3.4938 5.3276 3.6717 13 1 4.4640 5.0785 4.0756 14 6 2.4070 5.4815 4.5213 15 7 1.2247 5.7855 4.0292 16 14 2.6223 5.2571 6.3633 17 1 3.6149 6.2391 6.8689 18 1 1.3203 5.4733 7.0438 19 1 3.1029 3.8797 6.6412 20 6 4.0560 2.5171 0.0003 21 7 5.5340 2.5966 0.0004 22 8 6.1986 1.5789 0.0768 23 8 6.0854 3.6799 -0.0758 24 6 3.4311 1.2848 -0.0051 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2129 2.3203 0.0014 29 1 1.3340 4.5113 0.0100 30 1 4.8324 4.9984 -0.6749 31 1 3.2806 5.7872 -0.3033 32 1 4.6750 7.4434 1.0491 33 1 5.6550 6.8464 2.4101 34 1 6.1540 6.5037 0.7364 35 1 2.4648 5.7167 1.9587 36 1 0.4653 5.8934 4.6230 37 1 4.0207 0.3799 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170298151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:37 Heat of formation + Delta-G solvation = -19.624138 kcal Electronic energy + Delta-G solvation = -22466.744009 eV Core-core repulsion = 19019.704217 eV Total energy + Delta-G solvation = -3447.039792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.34717 -41.32791 -39.24918 -37.82526 -37.18998 -34.44072 -32.98088 -32.32996 -30.44711 -28.99393 -27.42119 -26.71387 -25.69622 -23.77471 -22.97251 -21.57460 -20.29407 -19.75857 -19.28028 -18.60785 -18.07024 -17.51495 -16.83570 -16.79847 -16.64563 -15.68687 -15.43168 -15.14200 -14.90163 -14.28889 -14.18200 -13.64330 -13.54216 -13.44189 -13.15920 -12.89641 -12.71215 -12.50601 -12.45034 -12.34618 -12.23355 -12.18499 -12.09850 -11.74275 -11.60278 -11.44644 -10.95393 -10.59900 -9.42504 -8.97649 -7.94152 -5.19462 -1.18461 0.03313 0.31041 0.40319 1.44093 1.44843 1.50883 2.14004 2.27878 2.54542 3.38065 3.38453 3.52580 3.65538 3.80985 3.89665 4.01554 4.22549 4.30574 4.37537 4.41831 4.51519 4.55058 4.72302 4.77318 4.85674 4.93518 4.98137 5.06355 5.13821 5.16597 5.36084 5.49175 5.54360 5.57607 6.13072 6.29334 6.60758 7.36701 8.10786 8.39075 9.28141 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.007039 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.443585 B = 3976.893830 C = 5207.203216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.123 3.877 4 C -0.139 4.139 5 C -0.069 4.069 6 C -0.035 4.035 7 C -0.095 4.095 8 C 0.183 3.817 9 H 0.019 0.981 10 C -0.152 4.152 11 N -0.728 5.728 12 C -0.236 4.236 13 H 0.059 0.941 14 C -0.064 4.064 15 N -0.958 5.958 16 Si 0.957 3.043 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.287 1.287 20 C -0.026 4.026 21 N 0.037 4.963 22 O -0.197 6.197 23 O -0.150 6.150 24 C -0.107 4.107 25 H 0.127 0.873 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.176 0.824 29 H 0.161 0.839 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -8.140 -12.838 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.076 3.924 4 C -0.157 4.157 5 C -0.088 4.088 6 C -0.037 4.037 7 C -0.132 4.132 8 C 0.075 3.925 9 H 0.037 0.963 10 C -0.211 4.211 11 N -0.370 5.370 12 C -0.369 4.369 13 H 0.077 0.923 14 C -0.257 4.257 15 N -0.608 5.608 16 Si 0.787 3.213 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.214 1.214 20 C -0.109 4.109 21 N 0.551 4.449 22 O -0.404 6.404 23 O -0.368 6.368 24 C -0.127 4.127 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.193 0.807 29 H 0.178 0.822 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.436 -8.478 -12.676 15.632 hybrid contribution 0.087 0.114 1.304 1.312 sum -3.349 -8.364 -11.372 14.508 Atomic orbital electron populations 1.23522 0.75383 1.06396 1.02808 1.86068 1.24176 1.24999 1.88429 1.18523 0.90583 0.85854 0.97433 1.21997 1.02718 0.91055 0.99979 1.21167 0.91925 0.99466 0.96235 1.19893 0.94406 0.94242 0.95167 1.21305 1.01664 0.91763 0.98489 1.20214 0.88576 0.95374 0.88362 0.96295 1.22220 0.99984 0.98395 1.00545 1.42524 1.07603 1.84378 1.02528 1.19388 0.94285 1.38282 0.84906 0.92308 1.25279 0.95610 1.03620 1.01148 1.69738 0.99769 1.56661 1.34674 0.85463 0.76377 0.77674 0.81768 1.20853 1.21645 1.21400 1.20601 0.78286 0.96436 1.15595 1.43633 1.04068 1.00068 0.97136 1.94483 1.64898 1.25981 1.55068 1.94447 1.74142 1.15909 1.52332 1.20025 0.93466 0.96814 1.02413 0.85485 0.91936 0.90397 0.80704 0.82191 0.86835 0.88930 0.92818 0.94958 0.91069 0.78970 0.94049 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -7.34 10.50 -92.40 -0.97 -8.31 16 3 C 0.12 3.23 6.69 22.51 0.15 3.38 16 4 C -0.14 -3.37 9.04 22.37 0.20 -3.17 16 5 C -0.07 -1.96 9.66 22.25 0.21 -1.75 16 6 C -0.04 -1.14 4.89 -19.85 -0.10 -1.24 16 7 C -0.09 -3.05 4.14 29.85 0.12 -2.93 16 8 C 0.18 7.38 2.26 44.99 0.10 7.49 16 9 H 0.02 0.86 6.70 -2.39 -0.02 0.85 16 10 C -0.15 -5.57 9.46 71.98 0.68 -4.88 16 11 N -0.73 -35.37 4.88 -322.94 -1.58 -36.95 16 12 C -0.24 -13.13 9.91 84.03 0.83 -12.30 16 13 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 14 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 15 N -0.96 -55.62 13.06 21.65 0.28 -55.34 16 16 Si 0.96 46.24 29.55 68.60 2.03 48.27 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 18 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 C -0.03 -0.86 6.76 36.36 0.25 -0.62 16 21 N 0.04 1.33 4.37 -46.50 -0.20 1.13 16 22 O -0.20 -7.26 18.45 18.89 0.35 -6.91 16 23 O -0.15 -5.46 13.67 18.89 0.26 -5.20 16 24 C -0.11 -3.24 9.50 22.36 0.21 -3.03 16 25 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 0.85 7.66 -2.39 -0.02 0.84 16 27 H 0.08 0.75 7.66 -2.39 -0.02 0.73 16 28 H 0.18 3.00 6.30 -2.91 -0.02 2.98 16 29 H 0.16 4.12 8.02 -2.91 -0.02 4.09 16 30 H 0.11 3.41 5.88 -2.39 -0.01 3.39 16 31 H 0.09 2.65 7.98 -2.39 -0.02 2.63 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 35 H 0.38 18.72 7.77 -92.70 -0.72 18.00 16 36 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.16 4.48 7.62 -2.91 -0.02 4.45 16 Total: -1.00 -66.75 317.72 4.79 -61.95 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.38 Total: 22.22 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.25 Total: -20.87 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -1.50 Total: -91.16 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.36 Total: -20.41 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -66.75 4.79 -61.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170298151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.329 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds