Wall clock time and date at job start Tue Mar 31 2020 01:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47382 * 2 1 4 4 H 1.09002 * 109.47024 * 304.99918 * 3 2 1 5 5 C 1.50701 * 109.47354 * 184.99843 * 3 2 1 6 6 H 1.07997 * 120.00064 * 240.00165 * 5 3 2 7 7 C 1.37875 * 119.99994 * 59.99474 * 5 3 2 8 8 N 1.31514 * 120.00188 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46943 * 90.00797 * 9 7 5 11 11 H 1.48497 * 109.47582 * 210.00423 * 9 7 5 12 12 H 1.48496 * 109.47344 * 330.00558 * 9 7 5 13 13 N 1.46495 * 109.47094 * 64.99753 * 3 2 1 14 14 C 1.34777 * 119.99972 * 275.00298 * 13 3 2 15 15 O 1.21505 * 120.00228 * 354.66118 * 14 13 3 16 16 C 1.48244 * 120.00275 * 174.66391 * 14 13 3 17 17 N 1.30453 * 120.00144 * 185.21016 * 16 14 13 18 18 O 1.41596 * 120.00119 * 5.09312 * 17 16 14 19 19 C 1.42899 * 114.00124 * 179.97438 * 18 17 16 20 20 C 1.47336 * 119.99506 * 5.21168 * 16 14 13 21 21 C 1.36284 * 125.95443 * 179.71185 * 20 16 14 22 22 C 1.40686 * 106.72485 * 179.85474 * 21 20 16 23 23 C 1.34913 * 107.07096 * 0.41416 * 22 21 20 24 24 O 1.34207 * 108.71420 * 359.74308 * 23 22 21 25 25 H 1.08999 * 109.46728 * 60.00474 * 1 2 3 26 26 H 1.08993 * 109.47695 * 300.00301 * 1 2 3 27 27 H 1.09005 * 109.47408 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46982 * 120.00006 * 2 1 3 29 29 H 1.09002 * 109.47783 * 239.99531 * 2 1 3 30 30 H 0.96996 * 120.00211 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00468 * 94.99872 * 13 3 2 32 32 H 1.09006 * 109.46729 * 60.00121 * 19 18 17 33 33 H 1.08996 * 109.47414 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.47236 * 300.00108 * 19 18 17 35 35 H 1.08002 * 126.63122 * 0.02562 * 21 20 16 36 36 H 1.08006 * 126.46498 * 180.15772 * 22 21 20 37 37 H 1.07999 * 125.64632 * 179.78277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5548 -0.3503 -0.7600 11 1 6.3831 0.9222 -2.8170 12 1 6.5569 2.0737 -0.6900 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3036 2.7182 0.4036 16 6 -0.0026 3.2224 2.6686 17 7 -1.2168 3.6789 2.8075 18 8 -2.1492 3.5438 1.7504 19 6 -3.4387 4.0872 2.0399 20 6 0.9337 3.2614 3.8055 21 6 0.6631 3.7503 5.0486 22 6 1.8334 3.5860 5.8119 23 6 2.7555 3.0198 5.0061 24 8 2.2087 2.8255 3.7959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.8294 -0.0613 -2.9497 31 1 2.2718 2.1232 1.9978 32 1 -3.3449 5.1523 2.2518 33 1 -4.0943 3.9444 1.1809 34 1 -3.8604 3.5799 2.9075 35 1 -0.2703 4.1782 5.3836 36 1 1.9694 3.8646 6.8464 37 1 3.7663 2.7646 5.2883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177355298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:29 Heat of formation + Delta-G solvation = 2.069411 kcal Electronic energy + Delta-G solvation = -22333.022009 eV Core-core repulsion = 18886.922920 eV Total energy + Delta-G solvation = -3446.099089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.66512 -39.20023 -37.21137 -35.15846 -34.14742 -33.06235 -32.29208 -30.87150 -29.32749 -27.20009 -26.34561 -24.25880 -22.80925 -21.82079 -21.36062 -19.86936 -19.53493 -17.95618 -17.48078 -16.24718 -16.08085 -15.76568 -15.22156 -15.09778 -14.92849 -14.39374 -14.32946 -13.52767 -13.05086 -12.87096 -12.72051 -12.55043 -12.53486 -12.25721 -11.75917 -11.42627 -11.25988 -10.97979 -10.83187 -10.75258 -10.28584 -10.20441 -10.16343 -9.85856 -9.63757 -9.03885 -8.92121 -8.49307 -8.32913 -7.82502 -6.10554 -4.19653 0.71898 2.01626 2.12177 2.60626 3.25554 3.29262 3.32753 3.35353 3.82052 3.90282 4.34952 4.64497 4.86157 4.93598 5.20731 5.38104 5.38769 5.45674 5.58133 5.64983 5.74248 5.94875 6.08645 6.33587 6.38884 6.44795 6.64865 6.88424 7.04044 7.19454 7.26432 7.35631 7.41240 7.63306 7.74302 7.90672 8.17932 8.62840 8.76913 9.06810 9.46836 10.95013 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.006090 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.270497 B = 4596.826634 C = 5975.412810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.053 0.947 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.512 3.488 15 O -0.513 6.513 16 C 0.177 3.823 17 N -0.286 5.286 18 O -0.178 6.178 19 C 0.034 3.966 20 C 0.018 3.982 21 C -0.145 4.145 22 C -0.223 4.223 23 C -0.005 4.005 24 O -0.161 6.161 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.102 0.898 30 H 0.264 0.736 31 H 0.394 0.606 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.049 0.951 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 5.254 14.698 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.293 3.707 15 O -0.388 6.388 16 C -0.013 4.013 17 N -0.034 5.034 18 O -0.197 6.197 19 C -0.063 4.063 20 C -0.033 4.033 21 C -0.167 4.167 22 C -0.242 4.242 23 C -0.075 4.075 24 O -0.055 6.055 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.975 5.391 13.870 16.035 hybrid contribution 1.416 -0.166 0.024 1.426 sum -4.559 5.225 13.894 15.528 Atomic orbital electron populations 1.21820 0.98455 0.98322 1.00977 1.21946 0.92506 0.99671 1.02487 1.18885 0.94533 0.89179 0.80803 0.92967 1.21208 0.90523 1.38996 1.06325 0.91995 1.24878 0.98630 0.94812 0.95312 1.69891 1.35127 1.37629 1.09358 0.86446 0.84845 0.78440 0.77372 1.20526 1.21086 1.19832 1.46713 1.13999 1.54341 1.19167 1.18737 0.84061 0.80701 0.87222 1.90825 1.53701 1.56777 1.37451 1.21902 0.90618 0.96684 0.92116 1.76582 1.00067 1.12235 1.14478 1.90347 1.19948 1.78079 1.31363 1.22877 0.82932 0.98297 1.02200 1.19228 0.83567 1.06496 0.93963 1.21928 1.00415 1.02404 0.91961 1.21801 0.93641 1.07016 1.01721 1.24392 0.99814 1.01668 0.81609 1.83947 1.23062 1.64578 1.33940 0.93032 0.94758 0.95506 0.94881 0.87999 0.92553 0.76928 0.93210 0.88104 0.93254 0.82530 0.82745 0.77150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.59 37.15 0.32 -2.88 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.94 2.25 -69.08 -0.16 6.78 16 4 H 0.05 1.55 7.51 -51.93 -0.39 1.16 16 5 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.69 -15.49 4.98 -55.75 -0.28 -15.77 16 14 C 0.51 11.35 6.14 -12.15 -0.07 11.28 16 15 O -0.51 -12.85 12.51 -17.50 -0.22 -13.07 16 16 C 0.18 3.28 7.07 -80.64 -0.57 2.71 16 17 N -0.29 -5.03 11.12 34.60 0.38 -4.65 16 18 O -0.18 -3.27 9.52 -34.33 -0.33 -3.60 16 19 C 0.03 0.42 11.47 101.05 1.16 1.58 16 20 C 0.02 0.28 7.03 -36.59 -0.26 0.03 16 21 C -0.14 -1.79 10.59 -39.36 -0.42 -2.20 16 22 C -0.22 -2.22 10.88 -39.84 -0.43 -2.65 16 23 C 0.00 -0.05 12.08 29.55 0.36 0.31 16 24 O -0.16 -2.36 7.83 4.71 0.04 -2.32 16 25 H 0.05 1.26 7.92 -51.93 -0.41 0.84 16 26 H 0.03 0.78 5.76 -51.93 -0.30 0.48 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 8.04 5.34 -40.82 -0.22 7.82 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.15 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -32.16 317.07 -5.18 -37.35 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.55 Total: 7.07 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.61 Total: -1.21 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.73 Total: -44.58 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.51 Total: -18.99 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.16 -5.18 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177355298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.415 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds