Wall clock time and date at job start Tue Mar 31 2020 01:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47382 * 2 1 4 4 H 1.09002 * 109.47024 * 304.99918 * 3 2 1 5 5 C 1.50701 * 109.47354 * 184.99843 * 3 2 1 6 6 H 1.07997 * 120.00064 * 240.00165 * 5 3 2 7 7 C 1.37875 * 119.99994 * 59.99474 * 5 3 2 8 8 N 1.31514 * 120.00188 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46943 * 90.00797 * 9 7 5 11 11 H 1.48497 * 109.47582 * 210.00423 * 9 7 5 12 12 H 1.48496 * 109.47344 * 330.00558 * 9 7 5 13 13 N 1.46495 * 109.47094 * 64.99753 * 3 2 1 14 14 C 1.34777 * 119.99972 * 275.00298 * 13 3 2 15 15 O 1.21505 * 120.00228 * 354.66118 * 14 13 3 16 16 C 1.48244 * 120.00275 * 174.66391 * 14 13 3 17 17 N 1.30453 * 120.00144 * 185.21016 * 16 14 13 18 18 O 1.41596 * 120.00119 * 5.09312 * 17 16 14 19 19 C 1.42899 * 114.00124 * 179.97438 * 18 17 16 20 20 C 1.47336 * 119.99506 * 5.21168 * 16 14 13 21 21 C 1.36284 * 125.95443 * 179.71185 * 20 16 14 22 22 C 1.40686 * 106.72485 * 179.85474 * 21 20 16 23 23 C 1.34913 * 107.07096 * 0.41416 * 22 21 20 24 24 O 1.34207 * 108.71420 * 359.74308 * 23 22 21 25 25 H 1.08999 * 109.46728 * 60.00474 * 1 2 3 26 26 H 1.08993 * 109.47695 * 300.00301 * 1 2 3 27 27 H 1.09005 * 109.47408 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46982 * 120.00006 * 2 1 3 29 29 H 1.09002 * 109.47783 * 239.99531 * 2 1 3 30 30 H 0.96996 * 120.00211 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00468 * 94.99872 * 13 3 2 32 32 H 1.09006 * 109.46729 * 60.00121 * 19 18 17 33 33 H 1.08996 * 109.47414 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.47236 * 300.00108 * 19 18 17 35 35 H 1.08002 * 126.63122 * 0.02562 * 21 20 16 36 36 H 1.08006 * 126.46498 * 180.15772 * 22 21 20 37 37 H 1.07999 * 125.64632 * 179.78277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5548 -0.3503 -0.7600 11 1 6.3831 0.9222 -2.8170 12 1 6.5569 2.0737 -0.6900 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3036 2.7182 0.4036 16 6 -0.0026 3.2224 2.6686 17 7 -1.2168 3.6789 2.8075 18 8 -2.1492 3.5438 1.7504 19 6 -3.4387 4.0872 2.0399 20 6 0.9337 3.2614 3.8055 21 6 0.6631 3.7503 5.0486 22 6 1.8334 3.5860 5.8119 23 6 2.7555 3.0198 5.0061 24 8 2.2087 2.8255 3.7959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.8294 -0.0613 -2.9497 31 1 2.2718 2.1232 1.9978 32 1 -3.3449 5.1523 2.2518 33 1 -4.0943 3.9444 1.1809 34 1 -3.8604 3.5799 2.9075 35 1 -0.2703 4.1782 5.3836 36 1 1.9694 3.8646 6.8464 37 1 3.7663 2.7646 5.2883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177355298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:28 Heat of formation + Delta-G solvation = -19.366301 kcal Electronic energy + Delta-G solvation = -22333.951531 eV Core-core repulsion = 18886.922920 eV Total energy + Delta-G solvation = -3447.028611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.62550 -40.92558 -38.57315 -37.03196 -35.49165 -34.44980 -33.87166 -32.75860 -30.37176 -29.13082 -27.44147 -25.87890 -24.58341 -22.90879 -22.57702 -21.51323 -21.13766 -19.56721 -18.58888 -18.00552 -17.33105 -17.25012 -16.73600 -16.47030 -16.31172 -16.03630 -15.88438 -15.13535 -14.63824 -14.20465 -13.89770 -13.87968 -13.59575 -13.53518 -13.37279 -13.19699 -13.02101 -12.89962 -12.66090 -12.29626 -12.10420 -12.08744 -11.65368 -11.28244 -11.08780 -10.84254 -10.63990 -10.51407 -9.74809 -9.32715 -8.16182 -6.34109 -0.51791 0.90657 0.99960 1.45941 1.47223 1.57745 1.65726 2.01115 2.21882 2.41243 2.60576 3.13025 3.31463 3.95283 4.07452 4.24755 4.42478 4.45848 4.46330 4.48914 4.60056 4.67841 4.71453 4.90988 4.98685 5.00211 5.03672 5.18687 5.36532 5.45548 5.53640 5.57371 5.72855 5.82953 5.93359 6.08681 6.11985 6.71003 6.79860 7.26156 7.41815 8.89657 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.006090 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.270497 B = 4596.826634 C = 5975.412810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C 0.274 3.726 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.685 5.685 14 C 0.506 3.494 15 O -0.550 6.550 16 C 0.174 3.826 17 N -0.278 5.278 18 O -0.218 6.218 19 C 0.026 3.974 20 C -0.028 4.028 21 C -0.122 4.122 22 C -0.220 4.220 23 C 0.007 3.993 24 O -0.188 6.188 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.266 0.734 31 H 0.405 0.595 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 5.537 17.543 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.340 5.340 14 C 0.289 3.711 15 O -0.427 6.427 16 C -0.015 4.015 17 N -0.026 5.026 18 O -0.238 6.238 19 C -0.069 4.069 20 C -0.078 4.078 21 C -0.144 4.144 22 C -0.238 4.238 23 C -0.062 4.062 24 O -0.084 6.084 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.188 0.812 36 H 0.209 0.791 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.642 5.690 16.753 18.292 hybrid contribution 0.968 -0.206 -0.779 1.260 sum -3.674 5.484 15.974 17.284 Atomic orbital electron populations 1.21653 0.97235 0.99540 0.99712 1.21791 0.93500 0.98865 1.01686 1.18535 0.94305 0.89262 0.80775 0.98027 1.21503 0.90929 1.39332 1.06938 0.91137 1.25783 1.03598 0.94157 0.94753 1.70041 1.37204 1.38172 1.09859 0.85324 0.78699 0.79008 0.77198 1.19336 1.21214 1.18866 1.46518 1.14688 1.54359 1.18404 1.19367 0.83319 0.79896 0.88483 1.90789 1.54544 1.58017 1.39372 1.21872 0.91480 0.96802 0.91352 1.76572 0.99588 1.12237 1.14190 1.90320 1.21937 1.78937 1.32567 1.23183 0.80920 0.99069 1.03772 1.19037 0.84103 1.10587 0.94083 1.22260 1.01646 0.99753 0.90788 1.22219 0.92114 1.06342 1.03133 1.25386 1.01247 0.99511 0.80049 1.83892 1.22988 1.65387 1.36152 0.95288 0.94983 0.92871 0.93927 0.90241 0.92464 0.75554 0.91972 0.86367 0.91661 0.81230 0.79071 0.73204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.59 71.98 0.62 -5.28 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.27 14.79 2.25 44.25 0.10 14.89 16 4 H 0.00 0.12 7.51 -2.39 -0.02 0.10 16 5 C -0.55 -29.81 8.73 25.60 0.22 -29.59 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -52.65 11.29 21.45 0.24 -52.41 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.69 -31.78 4.98 -448.60 -2.23 -34.01 16 14 C 0.51 23.36 6.14 86.90 0.53 23.89 16 15 O -0.55 -29.08 12.51 18.13 0.23 -28.85 16 16 C 0.17 6.55 7.07 44.41 0.31 6.87 16 17 N -0.28 -9.86 11.12 -44.46 -0.49 -10.35 16 18 O -0.22 -8.18 9.52 -16.91 -0.16 -8.34 16 19 C 0.03 0.64 11.47 113.37 1.30 1.94 16 20 C -0.03 -0.84 7.03 24.21 0.17 -0.67 16 21 C -0.12 -2.71 10.59 22.41 0.24 -2.47 16 22 C -0.22 -3.47 10.88 22.10 0.24 -3.23 16 23 C 0.01 0.12 12.08 67.06 0.81 0.93 16 24 O -0.19 -5.24 7.83 -6.06 -0.05 -5.29 16 25 H 0.03 1.46 7.92 -2.39 -0.02 1.44 16 26 H 0.03 1.50 5.76 -2.39 -0.01 1.49 16 27 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.08 4.45 5.95 -2.39 -0.01 4.44 16 30 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.41 16.77 5.34 -92.71 -0.50 16.27 16 32 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.25 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -73.14 317.07 5.32 -67.82 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.60 Total: 24.63 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.16 Total: 2.73 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.49 Total: -96.77 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: 0.02 Total: -42.48 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -73.14 5.32 -67.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177355298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.453 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds