Wall clock time and date at job start Tue Mar 31 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.41474 * 2 1 4 4 C 1.51328 * 110.37134 * 237.70166 * 2 1 3 5 5 O 1.20832 * 125.09402 * 63.47484 * 4 2 1 6 6 O 1.34059 * 109.81509 * 243.47938 * 4 2 1 7 7 C 1.45833 * 109.90421 * 339.16209 * 6 4 2 8 8 C 1.54497 * 110.37194 * 122.30033 * 2 1 3 9 9 H 1.09004 * 110.86240 * 252.55229 * 8 2 1 10 10 C 1.50700 * 110.86618 * 16.01532 * 8 2 1 11 11 O 1.21283 * 119.99356 * 61.14538 * 10 8 2 12 12 N 1.34769 * 120.00137 * 241.14629 * 10 8 2 13 13 C 1.46503 * 119.99669 * 184.82681 * 12 10 8 14 14 C 1.50700 * 109.47090 * 269.99870 * 13 12 10 15 15 H 1.08006 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99854 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00175 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99758 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46837 * 120.00033 * 18 16 14 21 21 H 1.48502 * 109.46935 * 239.99659 * 18 16 14 22 22 C 1.46502 * 120.00428 * 4.82807 * 12 10 8 23 23 C 1.53001 * 109.46960 * 84.29823 * 22 12 10 24 24 C 1.47203 * 109.47036 * 180.02562 * 23 22 12 25 25 N 5.73247 * 88.25525 * 58.46219 * 2 1 3 26 26 H 1.08999 * 109.47147 * 291.35566 * 1 2 3 27 27 H 1.08991 * 109.47342 * 51.35834 * 1 2 3 28 28 H 1.08999 * 109.46714 * 171.35491 * 1 2 3 29 29 H 1.08999 * 110.44430 * 271.86405 * 7 6 4 30 30 H 1.09001 * 110.44140 * 149.34342 * 7 6 4 31 31 H 1.08999 * 109.47502 * 30.00100 * 13 12 10 32 32 H 1.09000 * 109.46921 * 150.00180 * 13 12 10 33 33 H 0.97002 * 120.00353 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.46430 * 324.30306 * 22 12 10 35 35 H 1.08994 * 109.47022 * 204.30411 * 22 12 10 36 36 H 1.08999 * 109.46883 * 60.00479 * 23 22 12 37 37 H 1.08997 * 109.47459 * 300.00594 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0567 -0.7580 -1.1991 5 8 1.8846 -0.4404 -2.3522 6 8 2.7429 -1.8348 -0.7905 7 6 3.1683 -1.6569 0.5930 8 6 2.0678 -0.7739 1.2242 9 1 2.4892 -0.0902 1.9612 10 6 0.9858 -1.6230 1.8402 11 8 0.4608 -2.5019 1.1899 12 7 0.6015 -1.4056 3.1135 13 6 -0.3736 -2.2970 3.7467 14 6 -1.7654 -1.7730 3.5031 15 1 -1.9093 -0.8669 2.9332 16 6 -2.8552 -2.4504 4.0077 17 7 -2.6800 -3.5540 4.7011 18 14 -4.5805 -1.8013 3.7051 19 1 -4.5065 -0.5539 2.9029 20 1 -5.3698 -2.8194 2.9664 21 1 -5.2367 -1.5145 5.0060 22 6 1.1589 -0.2779 3.8646 23 6 0.3632 0.9896 3.5466 24 6 0.9236 2.1228 4.3008 25 7 1.3554 2.9970 4.8835 26 1 -0.3633 0.3742 0.9571 27 1 -0.3633 0.6417 -0.8026 28 1 -0.3633 -1.0160 -0.1545 29 1 4.1324 -1.1500 0.6326 30 1 3.2221 -2.6195 1.1015 31 1 -0.2820 -3.2964 3.3215 32 1 -0.1840 -2.3396 4.8192 33 1 -3.4467 -4.0308 5.0558 34 1 2.2015 -0.1330 3.5817 35 1 1.0978 -0.4870 4.9325 36 1 -0.6794 0.8446 3.8294 37 1 0.4243 1.1987 2.4786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182082530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:21 Heat of formation + Delta-G solvation = -85.807104 kcal Electronic energy + Delta-G solvation = -22698.268881 eV Core-core repulsion = 19248.359180 eV Total energy + Delta-G solvation = -3449.909701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46012 -39.20674 -37.34180 -36.87178 -35.40345 -34.16641 -32.85332 -30.93724 -29.99202 -27.54463 -25.38784 -24.58075 -23.86787 -22.03986 -20.62426 -18.85668 -17.88693 -17.57679 -16.90324 -16.42855 -16.14437 -15.98853 -15.36467 -15.07933 -14.73936 -14.25728 -13.99957 -13.95621 -13.42800 -13.24706 -12.70977 -12.61678 -12.51895 -12.44661 -12.25916 -11.98059 -11.68551 -11.58203 -11.35487 -11.25894 -11.09018 -10.91042 -10.77029 -10.67616 -10.26418 -10.01106 -9.76466 -9.13249 -8.56436 -8.01917 -6.18118 -4.23500 2.09635 2.65835 2.79991 2.94886 3.21206 3.22049 3.31176 3.31705 3.43853 3.83517 4.03376 4.24688 4.32345 4.42904 4.63508 4.80099 5.00923 5.06173 5.09345 5.16800 5.18798 5.28349 5.35689 5.44910 5.74167 5.82933 5.89903 6.02463 6.41440 6.72916 6.78978 7.21544 7.28368 7.47495 7.55633 7.76396 8.03487 8.06873 8.65697 8.82429 9.42713 10.90114 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.006564 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.979830 B = 4264.879818 C = 5200.277037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 H 0.120 0.880 4 C 0.494 3.506 5 O -0.460 6.460 6 O -0.334 6.334 7 C 0.075 3.925 8 C -0.162 4.162 9 H 0.122 0.878 10 C 0.518 3.482 11 O -0.515 6.515 12 N -0.593 5.593 13 C 0.245 3.755 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.119 3.881 23 C -0.058 4.058 24 C 0.217 3.783 25 N -0.448 5.448 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.595 6.939 -2.910 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 H 0.137 0.863 4 C 0.334 3.666 5 O -0.344 6.344 6 O -0.250 6.250 7 C 0.000 4.000 8 C -0.183 4.183 9 H 0.140 0.860 10 C 0.303 3.697 11 O -0.390 6.390 12 N -0.324 5.324 13 C 0.126 3.874 14 C -0.568 4.568 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.007 4.007 23 C -0.099 4.099 24 C -0.101 4.101 25 N -0.125 5.125 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.809 7.543 -2.937 13.503 hybrid contribution -1.297 0.143 -0.045 1.306 sum 9.511 7.686 -2.982 12.587 Atomic orbital electron populations 1.21958 0.90225 1.05377 1.03323 1.22411 1.00554 1.00772 0.91783 0.86254 1.22972 0.75094 0.78626 0.89923 1.90689 1.56437 1.66357 1.20870 1.87035 1.67175 1.40283 1.30518 1.23976 0.95910 1.02277 0.77805 1.23089 0.97385 0.99071 0.98789 0.86046 1.19688 0.83324 0.84575 0.82139 1.90752 1.55108 1.33238 1.59881 1.48272 1.43740 1.28385 1.12013 1.19426 0.85599 0.89573 0.92767 1.21402 0.90647 1.10371 1.34378 0.92053 1.24913 0.99271 0.94752 0.94916 1.69915 1.31035 1.16541 1.35490 0.86510 0.84365 0.79049 0.77919 1.19666 1.20886 1.21007 1.21351 0.95661 0.84891 0.98826 1.20080 1.03260 0.87514 0.99025 1.29189 0.93138 0.94234 0.93529 1.81205 1.09898 1.11376 1.10021 0.90485 0.91477 0.89499 0.88800 0.86691 0.93612 0.94576 0.92629 0.90794 0.88860 0.85127 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.12 37.16 0.30 -1.75 16 2 C -0.13 -1.54 3.52 -90.68 -0.32 -1.86 16 3 H 0.12 0.97 8.14 -51.92 -0.42 0.54 16 4 C 0.49 7.27 7.88 36.31 0.29 7.56 16 5 O -0.46 -8.09 18.00 -18.42 -0.33 -8.42 16 6 O -0.33 -4.84 11.05 -38.46 -0.43 -5.26 16 7 C 0.08 0.75 7.26 37.98 0.28 1.03 16 8 C -0.16 -1.72 3.00 -90.16 -0.27 -1.99 16 9 H 0.12 0.84 5.52 -51.93 -0.29 0.55 16 10 C 0.52 8.13 4.84 -10.99 -0.05 8.08 16 11 O -0.51 -10.71 14.72 5.55 0.08 -10.63 16 12 N -0.59 -9.33 2.47 -175.06 -0.43 -9.76 16 13 C 0.24 5.28 5.16 -5.19 -0.03 5.25 16 14 C -0.53 -12.71 9.22 -34.44 -0.32 -13.02 16 15 H 0.06 1.42 7.42 -52.48 -0.39 1.03 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 18 Si 0.89 20.08 29.54 -169.99 -5.02 15.05 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.12 1.30 5.07 -4.04 -0.02 1.28 16 23 C -0.06 -0.59 5.98 -29.52 -0.18 -0.77 16 24 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 25 N -0.45 -6.28 18.54 42.15 0.78 -5.50 16 26 H 0.08 0.97 5.89 -51.93 -0.31 0.67 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.50 6.29 -51.93 -0.33 1.17 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.11 1.15 7.92 -51.93 -0.41 0.74 16 31 H 0.05 1.16 7.49 -51.93 -0.39 0.77 16 32 H 0.04 0.79 7.86 -51.93 -0.41 0.39 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.07 0.56 5.99 -51.93 -0.31 0.25 16 35 H 0.09 1.03 7.83 -51.93 -0.41 0.63 16 36 H 0.13 1.58 7.58 -51.93 -0.39 1.19 16 37 H 0.11 0.92 6.08 -51.93 -0.32 0.60 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -32.80 318.45 -4.90 -37.70 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.35 Total: -1.97 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.74 Total: 7.54 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 1.09 Total: -38.81 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.67 Total: -24.31 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.80 -4.90 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182082530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.111 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds