Wall clock time and date at job start Tue Mar 31 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.41474 * 2 1 4 4 C 1.51328 * 110.37134 * 237.70166 * 2 1 3 5 5 O 1.20832 * 125.09402 * 63.47484 * 4 2 1 6 6 O 1.34059 * 109.81509 * 243.47938 * 4 2 1 7 7 C 1.45833 * 109.90421 * 339.16209 * 6 4 2 8 8 C 1.54497 * 110.37194 * 122.30033 * 2 1 3 9 9 H 1.09004 * 110.86240 * 252.55229 * 8 2 1 10 10 C 1.50700 * 110.86618 * 16.01532 * 8 2 1 11 11 O 1.21283 * 119.99356 * 61.14538 * 10 8 2 12 12 N 1.34769 * 120.00137 * 241.14629 * 10 8 2 13 13 C 1.46503 * 119.99669 * 184.82681 * 12 10 8 14 14 C 1.50700 * 109.47090 * 269.99870 * 13 12 10 15 15 H 1.08006 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99854 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00175 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99758 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46837 * 120.00033 * 18 16 14 21 21 H 1.48502 * 109.46935 * 239.99659 * 18 16 14 22 22 C 1.46502 * 120.00428 * 4.82807 * 12 10 8 23 23 C 1.53001 * 109.46960 * 84.29823 * 22 12 10 24 24 C 1.47203 * 109.47036 * 180.02562 * 23 22 12 25 25 N 5.73247 * 88.25525 * 58.46219 * 2 1 3 26 26 H 1.08999 * 109.47147 * 291.35566 * 1 2 3 27 27 H 1.08991 * 109.47342 * 51.35834 * 1 2 3 28 28 H 1.08999 * 109.46714 * 171.35491 * 1 2 3 29 29 H 1.08999 * 110.44430 * 271.86405 * 7 6 4 30 30 H 1.09001 * 110.44140 * 149.34342 * 7 6 4 31 31 H 1.08999 * 109.47502 * 30.00100 * 13 12 10 32 32 H 1.09000 * 109.46921 * 150.00180 * 13 12 10 33 33 H 0.97002 * 120.00353 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.46430 * 324.30306 * 22 12 10 35 35 H 1.08994 * 109.47022 * 204.30411 * 22 12 10 36 36 H 1.08999 * 109.46883 * 60.00479 * 23 22 12 37 37 H 1.08997 * 109.47459 * 300.00594 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0567 -0.7580 -1.1991 5 8 1.8846 -0.4404 -2.3522 6 8 2.7429 -1.8348 -0.7905 7 6 3.1683 -1.6569 0.5930 8 6 2.0678 -0.7739 1.2242 9 1 2.4892 -0.0902 1.9612 10 6 0.9858 -1.6230 1.8402 11 8 0.4608 -2.5019 1.1899 12 7 0.6015 -1.4056 3.1135 13 6 -0.3736 -2.2970 3.7467 14 6 -1.7654 -1.7730 3.5031 15 1 -1.9093 -0.8669 2.9332 16 6 -2.8552 -2.4504 4.0077 17 7 -2.6800 -3.5540 4.7011 18 14 -4.5805 -1.8013 3.7051 19 1 -4.5065 -0.5539 2.9029 20 1 -5.3698 -2.8194 2.9664 21 1 -5.2367 -1.5145 5.0060 22 6 1.1589 -0.2779 3.8646 23 6 0.3632 0.9896 3.5466 24 6 0.9236 2.1228 4.3008 25 7 1.3554 2.9970 4.8835 26 1 -0.3633 0.3742 0.9571 27 1 -0.3633 0.6417 -0.8026 28 1 -0.3633 -1.0160 -0.1545 29 1 4.1324 -1.1500 0.6326 30 1 3.2221 -2.6195 1.1015 31 1 -0.2820 -3.2964 3.3215 32 1 -0.1840 -2.3396 4.8192 33 1 -3.4467 -4.0308 5.0558 34 1 2.2015 -0.1330 3.5817 35 1 1.0978 -0.4870 4.9325 36 1 -0.6794 0.8446 3.8294 37 1 0.4243 1.1987 2.4786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182082530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:21 Heat of formation + Delta-G solvation = -107.513000 kcal Electronic energy + Delta-G solvation = -22699.210119 eV Core-core repulsion = 19248.359180 eV Total energy + Delta-G solvation = -3450.850939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50484 -40.43977 -38.46906 -37.91804 -36.66768 -35.29823 -34.59184 -32.09083 -31.02304 -29.14138 -26.39062 -25.82064 -25.14364 -23.37380 -21.63499 -19.99839 -18.97769 -18.77378 -18.06282 -17.94795 -17.30558 -17.06287 -16.67593 -16.31494 -15.98399 -15.56988 -15.06104 -14.95661 -14.67030 -14.30226 -14.08074 -13.81433 -13.67315 -13.53890 -13.48063 -13.20247 -12.96960 -12.74610 -12.73516 -12.56671 -12.45621 -12.20900 -12.13633 -11.76620 -11.67879 -11.52006 -11.10089 -10.54587 -10.41717 -9.45233 -8.13289 -6.23548 1.03191 1.41959 1.46246 1.54070 1.62742 1.88687 1.90881 2.20738 2.31004 2.47217 2.88507 3.09794 3.20403 3.31477 3.53254 3.72734 3.98765 4.16387 4.21199 4.28181 4.34126 4.47096 4.57848 4.68429 4.77852 4.84998 4.93939 5.11859 5.20288 5.32163 5.39472 5.68239 5.78436 5.90677 6.16711 6.39858 6.66616 6.75523 6.88436 7.39022 7.53590 8.94126 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.006564 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.979830 B = 4264.879818 C = 5200.277037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 H 0.172 0.828 4 C 0.488 3.512 5 O -0.501 6.501 6 O -0.363 6.363 7 C 0.069 3.931 8 C -0.146 4.146 9 H 0.176 0.824 10 C 0.513 3.487 11 O -0.575 6.575 12 N -0.592 5.592 13 C 0.259 3.741 14 C -0.523 4.523 15 H 0.070 0.930 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.949 3.051 19 H -0.258 1.258 20 H -0.294 1.294 21 H -0.279 1.279 22 C 0.111 3.889 23 C -0.049 4.049 24 C 0.248 3.752 25 N -0.488 5.488 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.149 0.851 30 H 0.110 0.890 31 H -0.001 1.001 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.290 9.693 -2.664 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 H 0.189 0.811 4 C 0.331 3.669 5 O -0.388 6.388 6 O -0.280 6.280 7 C -0.004 4.004 8 C -0.167 4.167 9 H 0.193 0.807 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.322 5.322 13 C 0.138 3.862 14 C -0.562 4.562 15 H 0.088 0.912 16 C -0.189 4.189 17 N -0.571 5.571 18 Si 0.775 3.225 19 H -0.182 1.182 20 H -0.221 1.221 21 H -0.205 1.205 22 C -0.013 4.013 23 C -0.090 4.090 24 C -0.069 4.069 25 N -0.166 5.166 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.166 0.834 30 H 0.128 0.872 31 H 0.017 0.983 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.538 10.341 -2.660 16.468 hybrid contribution -1.802 -0.794 -0.115 1.973 sum 10.735 9.547 -2.775 14.632 Atomic orbital electron populations 1.21898 0.92026 1.02726 1.04221 1.22496 0.98807 1.02926 0.90103 0.81122 1.23539 0.74492 0.78597 0.90295 1.90657 1.57852 1.67610 1.22725 1.86996 1.67272 1.40699 1.32996 1.24422 0.97696 1.02838 0.75476 1.23148 0.95458 0.98862 0.99264 0.80725 1.20606 0.83634 0.84191 0.81437 1.90742 1.57330 1.36019 1.61317 1.48104 1.42681 1.28890 1.12503 1.18844 0.86382 0.88702 0.92285 1.21815 0.91720 1.09997 1.32687 0.91162 1.25688 1.02842 0.95130 0.95272 1.70033 1.31712 1.18075 1.37327 0.85642 0.80391 0.78601 0.77865 1.18158 1.22124 1.20513 1.21692 0.97975 0.83136 0.98503 1.20010 1.02021 0.86667 1.00297 1.29088 0.91945 0.93516 0.92392 1.81264 1.11299 1.12740 1.11324 0.89405 0.90583 0.94088 0.83359 0.87229 0.98309 0.95151 0.92933 0.85855 0.88945 0.86778 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.12 71.98 0.58 -3.20 16 2 C -0.12 -2.34 3.52 -10.83 -0.04 -2.38 16 3 H 0.17 1.61 8.14 -2.38 -0.02 1.59 16 4 C 0.49 13.56 7.88 71.44 0.56 14.13 16 5 O -0.50 -17.40 18.00 21.62 0.39 -17.01 16 6 O -0.36 -9.99 11.05 -50.11 -0.55 -10.55 16 7 C 0.07 1.13 7.26 72.52 0.53 1.66 16 8 C -0.15 -2.46 3.00 -10.50 -0.03 -2.49 16 9 H 0.18 1.04 5.52 -2.39 -0.01 1.03 16 10 C 0.51 15.28 4.84 87.66 0.42 15.70 16 11 O -0.58 -24.49 14.72 -3.04 -0.04 -24.53 16 12 N -0.59 -17.56 2.47 -826.16 -2.04 -19.60 16 13 C 0.26 11.34 5.16 85.63 0.44 11.78 16 14 C -0.52 -25.23 9.22 25.60 0.24 -25.00 16 15 H 0.07 3.18 7.42 -2.91 -0.02 3.16 16 16 C 0.01 0.48 5.46 84.66 0.46 0.95 16 17 N -0.93 -52.25 13.29 21.45 0.28 -51.97 16 18 Si 0.95 41.41 29.54 68.60 2.03 43.44 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.11 1.98 5.07 86.38 0.44 2.42 16 23 C -0.05 -0.81 5.98 28.79 0.17 -0.63 16 24 C 0.25 4.70 15.43 89.44 1.38 6.08 16 25 N -0.49 -12.14 18.54 20.01 0.37 -11.77 16 26 H 0.09 1.95 5.89 -2.39 -0.01 1.93 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.42 6.29 -2.39 -0.02 1.40 16 29 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 1.93 7.92 -2.39 -0.02 1.91 16 31 H 0.00 -0.07 7.49 -2.39 -0.02 -0.08 16 32 H 0.03 1.36 7.86 -2.39 -0.02 1.34 16 33 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.12 1.04 5.99 -2.39 -0.01 1.03 16 35 H 0.09 1.75 7.83 -2.39 -0.02 1.73 16 36 H 0.11 2.41 7.58 -2.39 -0.02 2.40 16 37 H 0.13 1.54 6.08 -2.39 -0.01 1.52 16 Total: -1.00 -78.47 318.45 6.70 -71.77 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 1.11 Total: 1.20 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 5.16 Total: 19.02 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -1.38 Total: -83.34 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.21 Total: -52.09 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -78.47 6.70 -71.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182082530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.743 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds