Wall clock time and date at job start Tue Mar 31 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99809 * 2 1 4 4 C 1.53001 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47460 * 184.99910 * 4 3 2 6 6 C 1.52998 * 109.47026 * 305.00528 * 4 3 2 7 7 O 1.45207 * 109.46669 * 64.99813 * 4 3 2 8 8 C 1.34635 * 116.99355 * 150.00267 * 7 4 3 9 9 O 1.21498 * 120.00110 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99777 * 180.02562 * 8 7 4 11 11 C 1.39260 * 120.00026 * 183.70988 * 10 8 7 12 12 C 1.39679 * 119.57363 * 339.05480 * 11 10 8 13 13 C 1.38648 * 119.49403 * 180.02562 * 12 11 10 14 14 C 1.38353 * 118.67161 * 359.97438 * 13 12 11 15 15 C 1.40576 * 119.12863 * 0.02562 * 14 13 12 16 16 C 1.41330 * 119.78794 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99978 * 5.12193 * 16 15 14 18 18 C 1.40019 * 120.00300 * 185.12912 * 16 15 14 19 19 N 1.30743 * 120.00648 * 184.82272 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 4.81829 * 18 16 15 21 21 H 1.48495 * 109.47500 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47231 * 300.00377 * 20 18 16 23 23 H 1.48503 * 109.47080 * 60.00027 * 20 18 16 24 24 N 1.31902 * 119.57390 * 159.32910 * 11 10 8 25 25 H 1.08999 * 109.46651 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47080 * 299.99704 * 1 2 3 27 27 H 1.08996 * 109.47068 * 60.00424 * 1 2 3 28 28 H 1.09000 * 109.47098 * 60.00092 * 3 2 1 29 29 H 1.09006 * 109.47297 * 300.00180 * 3 2 1 30 30 H 1.08999 * 109.47238 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47132 * 299.99713 * 6 4 3 32 32 H 1.09000 * 109.47273 * 59.99150 * 6 4 3 33 33 H 0.97000 * 120.00016 * 3.71056 * 10 8 7 34 34 H 1.07994 * 120.25541 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.66727 * 179.97438 * 13 12 11 36 36 H 1.07998 * 120.43375 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99550 * 354.98618 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1767 0.0902 6 6 3.9781 0.3199 1.1825 7 8 3.9727 0.5696 -1.2398 8 6 5.1877 0.9213 -1.7013 9 8 5.8638 1.7206 -1.0847 10 7 5.6535 0.3874 -2.8478 11 6 6.9403 0.6912 -3.2850 12 6 7.5744 1.8432 -2.8141 13 6 8.8553 2.1444 -3.2509 14 6 9.4700 1.2873 -4.1462 15 6 8.7792 0.1435 -4.5829 16 6 9.3942 -0.7418 -5.4969 17 1 10.4207 -0.5844 -5.7938 18 6 8.6728 -1.8230 -6.0177 19 7 9.2677 -2.6954 -6.7887 20 14 6.8602 -2.0191 -5.6109 21 1 6.3311 -3.2341 -6.2808 22 1 6.6943 -2.1516 -4.1412 23 1 6.1141 -0.8269 -6.0876 24 7 7.5425 -0.1097 -4.1427 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 5.0647 0.2336 1.1828 31 1 3.6498 0.7817 2.1138 32 1 3.5351 -0.6719 1.0930 33 1 5.0924 -0.2085 -3.3684 34 1 7.0707 2.4944 -2.1151 35 1 9.3631 3.0305 -2.8993 36 1 10.4675 1.4942 -4.5047 37 1 10.1887 -2.5551 -7.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195379166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:48 Heat of formation + Delta-G solvation = -94.124815 kcal Electronic energy + Delta-G solvation = -21700.500294 eV Core-core repulsion = 18250.229910 eV Total energy + Delta-G solvation = -3450.270384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70883 -38.96202 -38.10390 -36.50323 -34.67288 -33.57065 -32.41413 -31.14566 -29.46835 -27.62568 -26.00378 -25.41487 -23.57661 -21.85544 -21.26337 -20.36046 -18.94943 -18.15415 -17.03870 -16.82265 -16.36563 -16.11820 -15.58103 -15.33138 -15.07568 -14.47713 -13.89708 -13.72477 -13.41117 -13.08190 -12.95929 -12.77065 -12.42252 -12.26577 -12.08735 -11.92392 -11.62684 -11.32916 -11.12604 -10.88040 -10.56783 -10.33580 -10.11135 -9.97508 -9.71818 -9.48587 -9.19233 -8.59371 -7.76249 -7.53158 -7.23956 -4.80079 2.12854 2.30589 2.62009 3.16262 3.47722 3.55384 3.65535 3.96512 4.23644 4.39719 4.52607 4.61691 4.74505 4.96247 5.04499 5.09183 5.11728 5.31735 5.40865 5.46488 5.52633 5.74721 5.82120 5.99684 6.11787 6.29213 6.43766 6.49500 6.63676 6.84929 7.07467 7.16096 7.41597 7.52540 7.61959 7.72811 8.08583 8.27419 8.52388 8.63611 9.35691 9.98582 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.004584 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.206498 B = 6106.163165 C = 7097.743688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.108 3.892 5 H 0.103 0.897 6 C -0.167 4.167 7 O -0.355 6.355 8 C 0.654 3.346 9 O -0.548 6.548 10 N -0.631 5.631 11 C 0.398 3.602 12 C -0.314 4.314 13 C -0.034 4.034 14 C -0.275 4.275 15 C 0.274 3.726 16 C -0.474 4.474 17 H 0.085 0.915 18 C 0.044 3.956 19 N -0.804 5.804 20 Si 1.151 2.849 21 H -0.331 1.331 22 H -0.278 1.278 23 H -0.294 1.294 24 N -0.596 5.596 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.147 0.853 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 6.440 11.812 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.013 4.013 4 C 0.053 3.947 5 H 0.121 0.879 6 C -0.225 4.225 7 O -0.270 6.270 8 C 0.407 3.593 9 O -0.436 6.436 10 N -0.281 5.281 11 C 0.169 3.831 12 C -0.339 4.339 13 C -0.058 4.058 14 C -0.298 4.298 15 C 0.150 3.850 16 C -0.506 4.506 17 H 0.103 0.897 18 C -0.178 4.178 19 N -0.426 5.426 20 Si 0.986 3.014 21 H -0.264 1.264 22 H -0.206 1.206 23 H -0.222 1.222 24 N -0.322 5.322 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.249 0.751 34 H 0.165 0.835 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.915 4.927 11.636 20.321 hybrid contribution 1.605 1.721 0.212 2.362 sum -14.310 6.647 11.848 19.732 Atomic orbital electron populations 1.22756 0.81044 1.02960 0.99857 1.87985 1.19539 1.26883 1.95363 1.22693 0.91439 0.85799 1.01361 1.22744 0.92328 0.98384 0.81281 0.87937 1.22120 1.02547 1.01463 0.96342 1.86392 1.32893 1.66488 1.41207 1.17857 0.80584 0.79904 0.80995 1.90863 1.57493 1.36099 1.59166 1.41710 1.14972 1.49468 1.21954 1.17748 0.82401 0.90256 0.92739 1.21724 0.98654 1.01032 1.12482 1.20943 0.93924 0.97004 0.93937 1.21627 1.01767 0.99520 1.06836 1.18255 0.85742 0.90835 0.90166 1.20737 1.00230 1.08915 1.20729 0.89734 1.27776 1.09182 0.89995 0.90805 1.70650 1.15161 1.31726 1.25040 0.81900 0.70178 0.72997 0.76303 1.26432 1.20629 1.22184 1.65946 1.13420 1.31634 1.21236 0.89484 0.94184 0.93980 0.90960 0.92136 0.91572 0.90931 0.90631 0.75054 0.83540 0.87445 0.87541 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.13 9.79 -38.79 -0.38 -4.51 16 3 C 0.06 0.60 5.82 37.16 0.22 0.82 16 4 C 0.11 1.30 2.98 -26.73 -0.08 1.22 16 5 H 0.10 1.20 7.16 -51.93 -0.37 0.83 16 6 C -0.17 -1.89 9.35 37.16 0.35 -1.54 16 7 O -0.36 -5.51 9.90 -43.09 -0.43 -5.94 16 8 C 0.65 12.00 8.62 54.06 0.47 12.47 16 9 O -0.55 -10.84 12.26 -19.27 -0.24 -11.08 16 10 N -0.63 -12.63 5.42 -15.83 -0.09 -12.72 16 11 C 0.40 9.34 7.51 -154.99 -1.16 8.18 16 12 C -0.31 -7.09 8.90 -38.89 -0.35 -7.44 16 13 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 14 C -0.28 -6.54 9.83 -38.66 -0.38 -6.92 16 15 C 0.27 7.22 6.40 -85.00 -0.54 6.68 16 16 C -0.47 -12.94 9.57 -37.74 -0.36 -13.30 16 17 H 0.08 2.29 8.05 -52.48 -0.42 1.86 16 18 C 0.04 1.19 5.52 -17.35 -0.10 1.10 16 19 N -0.80 -21.96 13.65 55.55 0.76 -21.20 16 20 Si 1.15 28.21 25.61 -169.99 -4.35 23.85 16 21 H -0.33 -8.01 7.11 56.52 0.40 -7.61 16 22 H -0.28 -6.79 6.61 56.52 0.37 -6.42 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 N -0.60 -15.33 4.54 -10.26 -0.05 -15.38 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.90 7.56 -51.93 -0.39 0.50 16 33 H 0.41 7.55 8.93 -40.82 -0.36 7.19 16 34 H 0.15 3.21 5.16 -52.93 -0.27 2.94 16 35 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -31.01 316.33 -6.04 -37.05 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.81 Total: 3.70 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.23 Total: 1.46 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.63 Total: -49.30 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.04 Total: -21.53 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.35 Total: 23.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.01 -6.04 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195379166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.076 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds