Wall clock time and date at job start Tue Mar 31 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99809 * 2 1 4 4 C 1.53001 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47460 * 184.99910 * 4 3 2 6 6 C 1.52998 * 109.47026 * 305.00528 * 4 3 2 7 7 O 1.45207 * 109.46669 * 64.99813 * 4 3 2 8 8 C 1.34635 * 116.99355 * 150.00267 * 7 4 3 9 9 O 1.21498 * 120.00110 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99777 * 180.02562 * 8 7 4 11 11 C 1.39260 * 120.00026 * 183.70988 * 10 8 7 12 12 C 1.39679 * 119.57363 * 339.05480 * 11 10 8 13 13 C 1.38648 * 119.49403 * 180.02562 * 12 11 10 14 14 C 1.38353 * 118.67161 * 359.97438 * 13 12 11 15 15 C 1.40576 * 119.12863 * 0.02562 * 14 13 12 16 16 C 1.41330 * 119.78794 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99978 * 5.12193 * 16 15 14 18 18 C 1.40019 * 120.00300 * 185.12912 * 16 15 14 19 19 N 1.30743 * 120.00648 * 184.82272 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 4.81829 * 18 16 15 21 21 H 1.48495 * 109.47500 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47231 * 300.00377 * 20 18 16 23 23 H 1.48503 * 109.47080 * 60.00027 * 20 18 16 24 24 N 1.31902 * 119.57390 * 159.32910 * 11 10 8 25 25 H 1.08999 * 109.46651 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47080 * 299.99704 * 1 2 3 27 27 H 1.08996 * 109.47068 * 60.00424 * 1 2 3 28 28 H 1.09000 * 109.47098 * 60.00092 * 3 2 1 29 29 H 1.09006 * 109.47297 * 300.00180 * 3 2 1 30 30 H 1.08999 * 109.47238 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47132 * 299.99713 * 6 4 3 32 32 H 1.09000 * 109.47273 * 59.99150 * 6 4 3 33 33 H 0.97000 * 120.00016 * 3.71056 * 10 8 7 34 34 H 1.07994 * 120.25541 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.66727 * 179.97438 * 13 12 11 36 36 H 1.07998 * 120.43375 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99550 * 354.98618 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1767 0.0902 6 6 3.9781 0.3199 1.1825 7 8 3.9727 0.5696 -1.2398 8 6 5.1877 0.9213 -1.7013 9 8 5.8638 1.7206 -1.0847 10 7 5.6535 0.3874 -2.8478 11 6 6.9403 0.6912 -3.2850 12 6 7.5744 1.8432 -2.8141 13 6 8.8553 2.1444 -3.2509 14 6 9.4700 1.2873 -4.1462 15 6 8.7792 0.1435 -4.5829 16 6 9.3942 -0.7418 -5.4969 17 1 10.4207 -0.5844 -5.7938 18 6 8.6728 -1.8230 -6.0177 19 7 9.2677 -2.6954 -6.7887 20 14 6.8602 -2.0191 -5.6109 21 1 6.3311 -3.2341 -6.2808 22 1 6.6943 -2.1516 -4.1412 23 1 6.1141 -0.8269 -6.0876 24 7 7.5425 -0.1097 -4.1427 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 5.0647 0.2336 1.1828 31 1 3.6498 0.7817 2.1138 32 1 3.5351 -0.6719 1.0930 33 1 5.0924 -0.2085 -3.3684 34 1 7.0707 2.4944 -2.1151 35 1 9.3631 3.0305 -2.8993 36 1 10.4675 1.4942 -4.5047 37 1 10.1887 -2.5551 -7.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195379166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:47 Heat of formation + Delta-G solvation = -114.547050 kcal Electronic energy + Delta-G solvation = -21701.385868 eV Core-core repulsion = 18250.229910 eV Total energy + Delta-G solvation = -3451.155958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16472 -40.56716 -39.09704 -37.77379 -36.33689 -35.46308 -33.41694 -33.01853 -31.28958 -28.32072 -27.35979 -26.67799 -25.05825 -23.67043 -22.59707 -21.77204 -20.65227 -19.86397 -18.58504 -17.99289 -17.49423 -17.17279 -16.94555 -16.61058 -16.39548 -16.04203 -15.56542 -15.13295 -14.87384 -14.63944 -14.30932 -14.26914 -13.78861 -13.74657 -13.23454 -13.07376 -12.90765 -12.77383 -12.37353 -12.23655 -12.02765 -11.84695 -11.69206 -11.62558 -11.19258 -11.10648 -10.62423 -10.44939 -9.72687 -9.41067 -9.22114 -6.83362 0.47724 0.71980 0.81543 1.56642 1.59304 1.73700 2.02901 2.44077 2.64816 2.80661 2.89519 3.52003 3.69662 3.91287 4.03528 4.13660 4.29977 4.39057 4.46867 4.56014 4.58030 4.63371 4.65060 4.68753 4.76937 4.83357 4.91666 5.16711 5.28902 5.31905 5.37446 5.40558 5.73365 5.77869 5.89997 6.19011 6.21536 6.37467 6.62243 7.06909 7.44317 7.94591 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.004584 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.206498 B = 6106.163165 C = 7097.743688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.067 3.933 4 C 0.096 3.904 5 H 0.108 0.892 6 C -0.163 4.163 7 O -0.354 6.354 8 C 0.660 3.340 9 O -0.562 6.562 10 N -0.633 5.633 11 C 0.386 3.614 12 C -0.306 4.306 13 C -0.024 4.024 14 C -0.286 4.286 15 C 0.258 3.742 16 C -0.505 4.505 17 H 0.073 0.927 18 C 0.017 3.983 19 N -0.828 5.828 20 Si 1.181 2.819 21 H -0.329 1.329 22 H -0.280 1.280 23 H -0.290 1.290 24 N -0.612 5.612 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.420 0.580 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 8.150 13.780 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.010 4.010 4 C 0.041 3.959 5 H 0.126 0.874 6 C -0.220 4.220 7 O -0.268 6.268 8 C 0.414 3.586 9 O -0.452 6.452 10 N -0.285 5.285 11 C 0.156 3.844 12 C -0.330 4.330 13 C -0.048 4.048 14 C -0.308 4.308 15 C 0.133 3.867 16 C -0.538 4.538 17 H 0.091 0.909 18 C -0.200 4.200 19 N -0.451 5.451 20 Si 1.014 2.986 21 H -0.262 1.262 22 H -0.208 1.208 23 H -0.218 1.218 24 N -0.338 5.338 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.257 0.743 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.137 0.863 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.798 6.643 13.626 23.379 hybrid contribution 2.069 1.357 -0.189 2.481 sum -15.729 8.000 13.437 22.180 Atomic orbital electron populations 1.22920 0.79340 1.03735 1.01052 1.87937 1.21470 1.27769 1.95646 1.22779 0.89231 0.85721 1.03257 1.23231 0.94359 0.98423 0.79878 0.87434 1.22099 1.01015 1.01306 0.97554 1.86432 1.31011 1.66614 1.42775 1.17794 0.81220 0.79285 0.80278 1.90823 1.58232 1.36733 1.59390 1.41674 1.14072 1.49926 1.22796 1.18036 0.83603 0.90373 0.92379 1.22090 0.98913 1.00455 1.11581 1.21382 0.93491 0.97628 0.92337 1.21824 1.02476 0.99132 1.07417 1.18451 0.86413 0.91577 0.90222 1.20734 1.00127 1.10315 1.22641 0.90922 1.28461 1.10980 0.89962 0.90618 1.70666 1.15374 1.32465 1.26641 0.81498 0.68143 0.72972 0.75963 1.26231 1.20753 1.21847 1.65893 1.13476 1.32527 1.21944 0.89066 0.92250 0.93468 0.87519 0.91655 0.93699 0.87857 0.91480 0.74293 0.82321 0.83272 0.86273 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.92 9.79 -145.57 -1.43 -9.34 16 3 C 0.07 1.04 5.82 71.98 0.42 1.46 16 4 C 0.10 2.07 2.98 30.59 0.09 2.16 16 5 H 0.11 2.23 7.16 -2.39 -0.02 2.22 16 6 C -0.16 -3.33 9.35 71.98 0.67 -2.65 16 7 O -0.35 -10.38 9.90 -52.79 -0.52 -10.90 16 8 C 0.66 23.10 8.62 129.79 1.12 24.22 16 9 O -0.56 -21.05 12.26 19.85 0.24 -20.80 16 10 N -0.63 -24.50 5.42 -434.41 -2.35 -26.86 16 11 C 0.39 17.54 7.51 133.26 1.00 18.54 16 12 C -0.31 -13.04 8.90 22.72 0.20 -12.84 16 13 C -0.02 -0.99 10.15 22.40 0.23 -0.76 16 14 C -0.29 -13.21 9.83 22.87 0.22 -12.98 16 15 C 0.26 13.59 6.40 40.19 0.26 13.85 16 16 C -0.51 -28.21 9.57 23.46 0.22 -27.98 16 17 H 0.07 4.08 8.05 -2.91 -0.02 4.06 16 18 C 0.02 0.94 5.52 85.29 0.47 1.41 16 19 N -0.83 -46.37 13.65 21.84 0.30 -46.07 16 20 Si 1.18 57.68 25.61 68.60 1.76 59.44 16 21 H -0.33 -15.73 7.11 99.48 0.71 -15.02 16 22 H -0.28 -13.53 6.61 99.48 0.66 -12.88 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 N -0.61 -31.10 4.54 -186.36 -0.85 -31.94 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.07 1.49 7.56 -2.39 -0.02 1.47 16 33 H 0.42 14.89 8.93 -92.71 -0.83 14.06 16 34 H 0.16 6.46 5.16 -9.89 -0.05 6.41 16 35 H 0.15 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 37 H 0.28 15.22 8.72 -92.70 -0.81 14.41 16 Total: -1.00 -66.18 316.33 3.45 -62.74 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.14 Total: 17.77 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.16 Total: 5.98 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -2.90 Total: -104.87 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.71 Total: -41.05 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 1.76 Total: 59.44 kcal Total: -66.18 3.45 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195379166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.812 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds