Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.88411 * 2 1 4 4 C 1.54908 * 111.00745 * 236.12188 * 2 1 3 5 5 N 1.47414 * 104.83427 * 204.87537 * 4 2 1 6 6 C 1.36941 * 125.65304 * 204.08670 * 5 4 2 7 7 H 1.08008 * 119.99381 * 6.65072 * 6 5 4 8 8 C 1.38812 * 120.00565 * 186.64665 * 6 5 4 9 9 N 1.31618 * 119.99440 * 7.38012 * 8 6 5 10 10 Si 1.86793 * 120.00104 * 187.37813 * 8 6 5 11 11 H 1.48507 * 109.47081 * 84.99136 * 10 8 6 12 12 H 1.48502 * 109.47308 * 324.99111 * 10 8 6 13 13 H 1.48499 * 109.47100 * 204.98882 * 10 8 6 14 14 C 1.47021 * 108.70498 * 24.35841 * 5 4 2 15 15 C 1.54340 * 107.26384 * 358.57942 * 14 5 4 16 16 H 1.09001 * 110.50937 * 96.45359 * 15 14 5 17 17 N 1.46496 * 110.84949 * 219.67703 * 15 14 5 18 18 C 1.34780 * 119.99884 * 268.69059 * 17 15 14 19 19 O 1.21285 * 120.00089 * 0.02562 * 18 17 15 20 20 C 1.50702 * 119.99869 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.46966 * 180.02562 * 20 18 17 22 22 F 1.39896 * 109.47096 * 59.99829 * 21 20 18 23 23 F 1.39899 * 109.47211 * 180.02562 * 21 20 18 24 24 F 1.39903 * 109.47326 * 300.00048 * 21 20 18 25 25 H 1.09007 * 109.46901 * 182.42615 * 1 2 3 26 26 H 1.08994 * 109.47466 * 302.42530 * 1 2 3 27 27 H 1.08999 * 109.47304 * 62.42565 * 1 2 3 28 28 H 1.09003 * 110.36417 * 86.03468 * 4 2 1 29 29 H 1.09009 * 110.45681 * 323.76476 * 4 2 1 30 30 H 0.97004 * 119.99432 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.88851 * 118.12853 * 14 5 4 32 32 H 1.09007 * 109.88284 * 239.29575 * 14 5 4 33 33 H 0.96997 * 120.00036 * 88.69844 * 17 15 14 34 34 H 1.08997 * 109.47077 * 299.99816 * 20 18 17 35 35 H 1.09001 * 109.47147 * 60.00673 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4275 -1.2418 -0.7742 6 6 4.4643 -1.5648 -1.6084 7 1 4.3697 -1.4083 -2.6729 8 6 5.6368 -2.0934 -1.0861 9 7 5.7013 -2.4197 0.1874 10 14 7.1227 -2.3414 -2.1904 11 1 7.8964 -1.0764 -2.2708 12 1 6.6697 -2.7318 -3.5497 13 1 7.9835 -3.4133 -1.6287 14 6 3.4666 -1.2785 0.6950 15 6 2.0870 -0.8077 1.2019 16 1 1.4482 -1.6634 1.4207 17 7 2.2295 0.0496 2.3812 18 6 2.2019 -0.4917 3.6152 19 8 2.0596 -1.6887 3.7493 20 6 2.3480 0.3903 4.8284 21 6 2.2833 -0.4677 6.0935 22 9 3.3192 -1.4077 6.0729 23 9 2.4183 0.3511 7.2197 24 9 1.0526 -1.1312 6.1447 25 1 -0.3633 -1.0268 0.0435 26 1 -0.3634 0.5510 0.8674 27 1 -0.3634 0.4757 -0.9109 28 1 2.1553 -0.1712 -2.0839 29 1 1.4528 -1.6702 -1.4045 30 1 6.5205 -2.7893 0.5523 31 1 3.6617 -2.2954 1.0355 32 1 4.2431 -0.6071 1.0620 33 1 2.3435 1.0069 2.2740 34 1 3.3070 0.9068 4.7888 35 1 1.5410 1.1229 4.8443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206403529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = -170.201629 kcal Electronic energy + Delta-G solvation = -22715.608463 eV Core-core repulsion = 18720.182401 eV Total energy + Delta-G solvation = -3995.426062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.03790 -47.59451 -47.42803 -39.71332 -37.62564 -34.03833 -32.80390 -31.73153 -30.41980 -27.81244 -25.68861 -24.41442 -23.29719 -20.91634 -20.13162 -19.77601 -18.62726 -18.49575 -17.49535 -16.89367 -16.52388 -15.74724 -15.27904 -14.88063 -14.45074 -14.22331 -13.90467 -13.87541 -13.72432 -13.62163 -13.59778 -13.21488 -12.85126 -12.75655 -12.65274 -12.04017 -11.94467 -11.73592 -11.45318 -11.01566 -10.80883 -10.71981 -10.44999 -10.06361 -9.95292 -9.83480 -9.69609 -8.64347 -8.63768 -6.85170 -5.70351 -3.08163 2.56377 2.65896 3.21168 3.39721 3.44483 3.47199 3.69272 4.03329 4.18298 4.48903 4.77697 4.92962 4.98507 5.04415 5.26089 5.37706 5.51642 5.69800 5.92191 5.94341 6.09370 6.13222 6.28351 6.42680 6.58327 6.61941 6.86897 7.39859 7.53974 7.70959 7.83173 8.23298 8.31343 9.18552 9.80036 10.44669 11.38866 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.004919 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.398437 B = 5691.124207 C = 6787.641975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.604 5.604 6 C -0.233 4.233 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.281 1.281 13 H -0.291 1.291 14 C 0.168 3.832 15 C 0.120 3.880 16 H 0.093 0.907 17 N -0.705 5.705 18 C 0.515 3.485 19 O -0.518 6.518 20 C -0.196 4.196 21 C 0.472 3.528 22 F -0.170 7.170 23 F -0.187 7.187 24 F -0.175 7.175 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.398 0.602 34 H 0.137 0.863 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 9.926 8.743 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.331 5.331 6 C -0.362 4.362 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.563 5.563 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.207 1.207 13 H -0.217 1.217 14 C 0.042 3.958 15 C 0.016 3.984 16 H 0.111 0.889 17 N -0.355 5.355 18 C 0.298 3.702 19 O -0.393 6.393 20 C -0.237 4.237 21 C 0.417 3.583 22 F -0.151 7.151 23 F -0.169 7.169 24 F -0.156 7.156 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.232 0.768 34 H 0.155 0.845 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.461 8.909 8.873 15.736 hybrid contribution 0.990 0.318 -0.345 1.095 sum -8.471 9.228 8.528 15.154 Atomic orbital electron populations 1.21697 0.94949 1.01853 1.01011 1.22615 0.94901 0.99459 0.96347 0.90439 1.21584 0.87666 0.95161 0.94248 1.44408 1.07805 1.79223 1.01651 1.19031 0.91603 1.35827 0.89706 0.90339 1.24845 0.98563 1.00536 0.96405 1.69960 1.26786 1.47736 1.11820 0.86143 0.82757 0.77394 0.79479 1.21595 1.20676 1.21682 1.21546 0.89660 1.01007 0.83589 1.22580 1.00550 0.92758 0.82513 0.88943 1.45786 1.73352 1.11147 1.05258 1.19652 0.77852 0.88497 0.84196 1.90842 1.47988 1.14576 1.85911 1.22977 1.09396 1.00060 0.91293 1.19731 0.74472 0.79376 0.84673 1.93252 1.58460 1.66804 1.96586 1.93181 1.95724 1.72586 1.55364 1.93213 1.43630 1.82090 1.96683 0.92542 0.93162 0.92677 0.93935 0.95999 0.93630 0.91607 0.94775 0.76785 0.84478 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.30 37.15 0.35 -1.37 16 2 C -0.11 -1.77 3.27 -88.48 -0.29 -2.06 16 3 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 4 C 0.14 2.76 6.70 -2.54 -0.02 2.74 16 5 N -0.60 -15.18 3.39 -170.06 -0.58 -15.76 16 6 C -0.23 -6.46 10.26 -15.06 -0.15 -6.62 16 7 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 8 C -0.01 -0.19 5.45 -17.43 -0.09 -0.28 16 9 N -0.92 -27.31 10.48 55.49 0.58 -26.72 16 10 Si 0.91 22.10 29.56 -169.99 -5.02 17.08 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.17 4.04 5.19 -3.06 -0.02 4.03 16 15 C 0.12 2.18 2.78 -66.09 -0.18 1.99 16 16 H 0.09 1.82 7.43 -51.93 -0.39 1.43 16 17 N -0.71 -10.05 5.11 -52.02 -0.27 -10.32 16 18 C 0.51 7.73 7.60 -10.98 -0.08 7.65 16 19 O -0.52 -10.33 14.48 5.55 0.08 -10.25 16 20 C -0.20 -1.95 5.75 -27.88 -0.16 -2.11 16 21 C 0.47 5.98 2.89 37.16 0.11 6.09 16 22 F -0.17 -2.67 16.40 2.25 0.04 -2.63 16 23 F -0.19 -2.10 17.32 2.25 0.04 -2.07 16 24 F -0.17 -2.51 16.40 2.25 0.04 -2.47 16 25 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.44 8.04 -51.92 -0.42 0.02 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.88 6.99 -51.93 -0.36 1.52 16 32 H 0.03 0.89 7.80 -51.93 -0.40 0.48 16 33 H 0.40 4.24 8.56 -40.82 -0.35 3.89 16 34 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -33.72 305.43 -5.45 -39.18 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.42 Total: -0.70 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -0.55 Total: 10.07 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.26 Total: -52.80 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.11 Total: -7.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.72 -5.45 -39.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206403529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.024 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds