Wall clock time and date at job start Tue Mar 31 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.88411 * 2 1 4 4 C 1.54908 * 111.00745 * 236.12188 * 2 1 3 5 5 N 1.47414 * 104.83427 * 204.87537 * 4 2 1 6 6 C 1.36941 * 125.65304 * 204.08670 * 5 4 2 7 7 H 1.08008 * 119.99381 * 6.65072 * 6 5 4 8 8 C 1.38812 * 120.00565 * 186.64665 * 6 5 4 9 9 N 1.31618 * 119.99440 * 7.38012 * 8 6 5 10 10 Si 1.86793 * 120.00104 * 187.37813 * 8 6 5 11 11 H 1.48507 * 109.47081 * 84.99136 * 10 8 6 12 12 H 1.48502 * 109.47308 * 324.99111 * 10 8 6 13 13 H 1.48499 * 109.47100 * 204.98882 * 10 8 6 14 14 C 1.47021 * 108.70498 * 24.35841 * 5 4 2 15 15 C 1.54340 * 107.26384 * 358.57942 * 14 5 4 16 16 H 1.09001 * 110.50937 * 96.45359 * 15 14 5 17 17 N 1.46496 * 110.84949 * 219.67703 * 15 14 5 18 18 C 1.34780 * 119.99884 * 268.69059 * 17 15 14 19 19 O 1.21285 * 120.00089 * 0.02562 * 18 17 15 20 20 C 1.50702 * 119.99869 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.46966 * 180.02562 * 20 18 17 22 22 F 1.39896 * 109.47096 * 59.99829 * 21 20 18 23 23 F 1.39899 * 109.47211 * 180.02562 * 21 20 18 24 24 F 1.39903 * 109.47326 * 300.00048 * 21 20 18 25 25 H 1.09007 * 109.46901 * 182.42615 * 1 2 3 26 26 H 1.08994 * 109.47466 * 302.42530 * 1 2 3 27 27 H 1.08999 * 109.47304 * 62.42565 * 1 2 3 28 28 H 1.09003 * 110.36417 * 86.03468 * 4 2 1 29 29 H 1.09009 * 110.45681 * 323.76476 * 4 2 1 30 30 H 0.97004 * 119.99432 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.88851 * 118.12853 * 14 5 4 32 32 H 1.09007 * 109.88284 * 239.29575 * 14 5 4 33 33 H 0.96997 * 120.00036 * 88.69844 * 17 15 14 34 34 H 1.08997 * 109.47077 * 299.99816 * 20 18 17 35 35 H 1.09001 * 109.47147 * 60.00673 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4275 -1.2418 -0.7742 6 6 4.4643 -1.5648 -1.6084 7 1 4.3697 -1.4083 -2.6729 8 6 5.6368 -2.0934 -1.0861 9 7 5.7013 -2.4197 0.1874 10 14 7.1227 -2.3414 -2.1904 11 1 7.8964 -1.0764 -2.2708 12 1 6.6697 -2.7318 -3.5497 13 1 7.9835 -3.4133 -1.6287 14 6 3.4666 -1.2785 0.6950 15 6 2.0870 -0.8077 1.2019 16 1 1.4482 -1.6634 1.4207 17 7 2.2295 0.0496 2.3812 18 6 2.2019 -0.4917 3.6152 19 8 2.0596 -1.6887 3.7493 20 6 2.3480 0.3903 4.8284 21 6 2.2833 -0.4677 6.0935 22 9 3.3192 -1.4077 6.0729 23 9 2.4183 0.3511 7.2197 24 9 1.0526 -1.1312 6.1447 25 1 -0.3633 -1.0268 0.0435 26 1 -0.3634 0.5510 0.8674 27 1 -0.3634 0.4757 -0.9109 28 1 2.1553 -0.1712 -2.0839 29 1 1.4528 -1.6702 -1.4045 30 1 6.5205 -2.7893 0.5523 31 1 3.6617 -2.2954 1.0355 32 1 4.2431 -0.6071 1.0620 33 1 2.3435 1.0069 2.2740 34 1 3.3070 0.9068 4.7888 35 1 1.5410 1.1229 4.8443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206403529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:36 Heat of formation + Delta-G solvation = -194.503214 kcal Electronic energy + Delta-G solvation = -22716.662259 eV Core-core repulsion = 18720.182401 eV Total energy + Delta-G solvation = -3996.479858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.05499 -48.57587 -48.52522 -41.03712 -39.17122 -35.66927 -34.37972 -32.78382 -32.14519 -29.46698 -27.38183 -25.76191 -24.67758 -22.43225 -21.60435 -21.17289 -19.67583 -19.52343 -18.90198 -18.52165 -17.71564 -17.12595 -16.89138 -16.31784 -15.60118 -15.51293 -15.28934 -15.20325 -14.93458 -14.70305 -14.69124 -14.65156 -14.34447 -14.07976 -13.84346 -13.38927 -13.36768 -13.12989 -12.90677 -12.80953 -12.57636 -12.21225 -12.06504 -11.84834 -11.64492 -11.47115 -11.10287 -10.75375 -10.05443 -8.91756 -7.84095 -5.24365 1.44765 1.47417 1.48231 1.55913 1.59273 2.11668 2.49271 2.74998 3.09531 3.15938 3.32214 3.59239 3.73891 3.86514 4.04392 4.12580 4.21554 4.28698 4.50973 4.63512 4.74000 4.89405 5.08060 5.08908 5.16152 5.28368 5.46801 5.51035 5.65897 5.74359 6.17612 6.47350 7.05495 7.18999 7.75659 8.39203 9.23251 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.004919 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.398437 B = 5691.124207 C = 6787.641975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.130 3.870 5 N -0.626 5.626 6 C -0.243 4.243 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.979 3.021 11 H -0.282 1.282 12 H -0.266 1.266 13 H -0.300 1.300 14 C 0.180 3.820 15 C 0.137 3.863 16 H 0.073 0.927 17 N -0.692 5.692 18 C 0.508 3.492 19 O -0.575 6.575 20 C -0.178 4.178 21 C 0.465 3.535 22 F -0.195 7.195 23 F -0.176 7.176 24 F -0.188 7.188 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.244 0.756 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.421 0.579 34 H 0.169 0.831 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 12.785 8.232 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.117 0.883 4 C 0.004 3.996 5 N -0.353 5.353 6 C -0.372 4.372 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.208 1.208 12 H -0.191 1.191 13 H -0.227 1.227 14 C 0.054 3.946 15 C 0.031 3.969 16 H 0.091 0.909 17 N -0.343 5.343 18 C 0.294 3.706 19 O -0.454 6.454 20 C -0.218 4.218 21 C 0.410 3.590 22 F -0.176 7.176 23 F -0.158 7.158 24 F -0.169 7.169 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.187 0.813 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.738 11.838 8.342 18.028 hybrid contribution 1.341 -0.598 -0.189 1.480 sum -9.397 11.240 8.152 16.766 Atomic orbital electron populations 1.21659 0.91781 1.02005 1.03288 1.22531 0.97202 0.99090 0.92251 0.88259 1.21873 0.85203 0.95794 0.96685 1.44740 1.09461 1.79090 1.01990 1.19499 0.92436 1.34651 0.90600 0.89457 1.25731 1.01601 1.01076 0.97752 1.70239 1.26800 1.49227 1.13753 0.85080 0.79012 0.77026 0.78137 1.20819 1.19123 1.22663 1.21201 0.92608 0.97252 0.83587 1.22057 0.96372 0.93643 0.84864 0.90867 1.45555 1.72839 1.11843 1.04097 1.20534 0.76157 0.88395 0.85514 1.90830 1.50327 1.17451 1.86796 1.23024 1.13175 0.98963 0.86645 1.20172 0.73370 0.79255 0.86159 1.93206 1.59574 1.68075 1.96778 1.93200 1.95600 1.71944 1.55026 1.93187 1.44352 1.82580 1.96830 0.93556 0.90738 0.90500 0.92513 0.96281 0.94656 0.97610 0.97532 0.74133 0.81319 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.30 71.98 0.67 -2.08 16 2 C -0.09 -2.62 3.27 -9.41 -0.03 -2.65 16 3 H 0.10 2.48 8.01 -2.39 -0.02 2.46 16 4 C 0.13 4.97 6.70 86.86 0.58 5.55 16 5 N -0.63 -31.99 3.39 -691.95 -2.35 -34.34 16 6 C -0.24 -13.62 10.26 84.03 0.86 -12.76 16 7 H 0.09 4.61 7.84 -2.91 -0.02 4.58 16 8 C -0.07 -3.97 5.45 84.86 0.46 -3.51 16 9 N -0.95 -59.42 10.48 21.65 0.23 -59.20 16 10 Si 0.98 46.24 29.56 68.60 2.03 48.27 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.18 9.03 5.19 86.73 0.45 9.48 16 15 C 0.14 4.91 2.78 46.19 0.13 5.04 16 16 H 0.07 2.95 7.43 -2.39 -0.02 2.93 16 17 N -0.69 -18.46 5.11 -436.89 -2.23 -20.69 16 18 C 0.51 14.66 7.60 87.66 0.67 15.33 16 19 O -0.58 -23.52 14.48 -3.05 -0.04 -23.56 16 20 C -0.18 -2.97 5.75 29.85 0.17 -2.80 16 21 C 0.46 11.11 2.89 71.98 0.21 11.32 16 22 F -0.19 -6.20 16.40 44.97 0.74 -5.46 16 23 F -0.18 -3.58 17.32 44.97 0.78 -2.80 16 24 F -0.19 -5.27 16.40 44.97 0.74 -4.53 16 25 H 0.05 1.09 8.11 -2.38 -0.02 1.07 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.02 0.75 8.04 -2.38 -0.02 0.74 16 30 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.01 0.35 6.99 -2.39 -0.02 0.33 16 32 H 0.01 0.35 7.80 -2.38 -0.02 0.34 16 33 H 0.42 7.42 8.56 -92.71 -0.79 6.62 16 34 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.19 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -79.89 305.43 4.38 -75.51 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.33 Total: 3.87 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 4.17 Total: 22.93 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.35 Total: -114.23 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 9 Polarization: -15.04 SS G_CDS: 2.25 Total: -12.79 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -79.89 4.38 -75.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206403529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.990 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds