Wall clock time and date at job start Tue Mar 31 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47351 * 2 1 4 4 C 1.34228 * 116.99996 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00124 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99677 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47044 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47091 * 54.99974 * 7 6 4 9 9 C 1.50698 * 109.47227 * 175.00160 * 7 6 4 10 10 H 1.08005 * 119.99710 * 240.00415 * 9 7 6 11 11 C 1.37879 * 120.00260 * 59.99981 * 9 7 6 12 12 N 1.31515 * 119.99416 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99919 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47575 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47065 * 120.00067 * 13 11 9 16 16 H 1.48503 * 109.46933 * 239.99590 * 13 11 9 17 17 O 1.42897 * 109.47086 * 295.00248 * 7 6 4 18 18 C 1.35785 * 116.99921 * 150.00420 * 17 7 6 19 19 N 1.32120 * 119.72933 * 0.23832 * 18 17 7 20 20 C 1.32017 * 121.72497 * 180.29289 * 19 18 17 21 21 C 1.38053 * 120.97150 * 359.73056 * 20 19 18 22 22 C 1.38762 * 119.35272 * 359.97438 * 21 20 19 23 23 C 1.38958 * 118.41685 * 0.02562 * 22 21 20 24 24 N 1.39966 * 120.50522 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46804 * 60.00190 * 1 2 3 26 26 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47076 * 299.99994 * 1 2 3 28 28 H 1.09007 * 109.47350 * 239.99989 * 2 1 3 29 29 H 1.09004 * 109.47239 * 120.00123 * 2 1 3 30 30 H 1.08998 * 109.47365 * 60.00483 * 6 4 3 31 31 H 1.09004 * 109.47133 * 300.00463 * 6 4 3 32 32 H 0.97001 * 119.99313 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.51593 * 179.70460 * 20 19 18 34 34 H 1.08006 * 120.32167 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.79221 * 180.02562 * 22 21 20 36 36 H 0.97001 * 120.00335 * 0.02562 * 24 23 22 37 37 H 0.97005 * 119.99941 * 179.72006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8573 0.0010 8 1 5.7805 2.2501 -0.8411 9 6 6.0243 4.2445 -0.1221 10 1 6.6590 4.4933 -0.9598 11 6 5.7408 5.1961 0.8345 12 7 4.9682 4.8929 1.8547 13 14 6.4539 6.9158 0.6813 14 1 7.2844 6.9998 -0.5468 15 1 5.3488 7.9046 0.6008 16 1 7.2957 7.2101 1.8688 17 8 5.8945 2.2632 1.2217 18 6 7.0524 1.5555 1.1759 19 7 7.7103 1.4486 0.0351 20 6 8.8364 0.7656 -0.0555 21 6 9.3766 0.1366 1.0483 22 6 8.7238 0.2261 2.2695 23 6 7.5405 0.9516 2.3351 24 7 6.8458 1.0700 3.5445 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5846 3.4693 0.8912 31 1 3.5850 3.4699 -0.8888 32 1 4.7684 5.5625 2.5275 33 1 9.3423 0.6975 -1.0073 34 1 10.2983 -0.4199 0.9621 35 1 9.1258 -0.2565 3.1480 36 1 7.1899 0.6441 4.3452 37 1 6.0225 1.5816 3.5828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218211543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:25 Heat of formation + Delta-G solvation = -90.279688 kcal Electronic energy + Delta-G solvation = -22429.873691 eV Core-core repulsion = 18979.770044 eV Total energy + Delta-G solvation = -3450.103647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82036 -39.43028 -36.87212 -35.74263 -34.30535 -33.09920 -31.56247 -30.69191 -29.98725 -27.74656 -26.18391 -23.45671 -22.82743 -21.85922 -21.37568 -19.75049 -17.61278 -17.10178 -16.76010 -16.19190 -16.09282 -15.70009 -15.42824 -14.75314 -14.43447 -14.08788 -13.93648 -13.71615 -13.02469 -12.79024 -12.50992 -12.48084 -12.19215 -11.85933 -11.55948 -11.35648 -11.26701 -11.07488 -11.00527 -10.73297 -10.54254 -10.42606 -10.10607 -9.65352 -9.42499 -9.15936 -8.71795 -8.50637 -8.25950 -6.51174 -6.14019 -4.30524 2.18857 2.22287 3.07127 3.21583 3.31514 3.35640 3.38450 4.32250 4.41330 4.50010 4.80508 5.10093 5.15463 5.19663 5.40946 5.46426 5.50742 5.51125 5.77405 5.91076 5.94431 6.05230 6.11712 6.23408 6.41464 6.54367 6.75203 6.86767 6.92381 7.07587 7.32476 7.43815 7.77815 7.98363 8.09006 8.41443 8.56654 8.63028 8.92408 9.05812 9.44849 10.86425 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.008047 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.646576 B = 3478.645763 C = 5258.473445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.455 3.545 5 O -0.513 6.513 6 C -0.104 4.104 7 C 0.232 3.768 8 H 0.050 0.950 9 C -0.537 4.537 10 H 0.068 0.932 11 C 0.080 3.920 12 N -0.866 5.866 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.283 1.283 17 O -0.284 6.284 18 C 0.317 3.683 19 N -0.500 5.500 20 C 0.073 3.927 21 C -0.196 4.196 22 C -0.147 4.147 23 C 0.136 3.864 24 N -0.869 5.869 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.263 0.737 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.388 0.612 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -7.810 0.777 8.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.299 3.701 5 O -0.400 6.400 6 C -0.142 4.142 7 C 0.177 3.823 8 H 0.068 0.932 9 C -0.574 4.574 10 H 0.086 0.914 11 C -0.126 4.126 12 N -0.503 5.503 13 Si 0.722 3.278 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.209 1.209 17 O -0.189 6.189 18 C 0.130 3.870 19 N -0.226 5.226 20 C -0.082 4.082 21 C -0.217 4.217 22 C -0.178 4.178 23 C 0.030 3.970 24 N -0.411 5.411 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.215 0.785 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.719 -7.570 0.341 8.051 hybrid contribution 0.683 0.406 0.974 1.257 sum -2.036 -7.165 1.315 7.564 Atomic orbital electron populations 1.21775 0.93346 1.02273 1.03304 1.22835 0.94801 0.81927 1.01953 1.86583 1.26304 1.30850 1.84825 1.24974 0.79396 0.94423 0.71262 1.90607 1.60140 1.43598 1.45642 1.21930 0.97299 0.87934 1.07016 1.19638 0.87379 0.92594 0.82681 0.93164 1.21454 1.31521 0.94604 1.09849 0.91429 1.25073 0.93990 0.98881 0.94635 1.69866 1.35176 1.34170 1.11096 0.86502 0.79111 0.83865 0.78358 1.19507 1.20731 1.20931 1.86321 1.32337 1.61195 1.39032 1.19506 0.88899 0.90892 0.87660 1.67335 1.09551 1.19610 1.26067 1.21996 0.92490 0.95715 0.98037 1.21422 1.01834 1.04945 0.93516 1.20597 0.95243 1.03350 0.98600 1.17926 0.93680 0.98833 0.86596 1.42158 1.29813 1.61882 1.07268 0.91708 0.90897 0.91632 0.91930 0.91876 0.84459 0.88100 0.92655 0.84178 0.86269 0.86010 0.78483 0.76295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 37.15 0.38 -1.28 16 2 C 0.06 0.89 6.19 37.15 0.23 1.12 16 3 O -0.37 -6.91 10.22 -39.25 -0.40 -7.31 16 4 C 0.46 9.89 7.84 36.01 0.28 10.17 16 5 O -0.51 -12.27 15.17 -24.05 -0.36 -12.63 16 6 C -0.10 -2.38 5.22 -27.88 -0.15 -2.53 16 7 C 0.23 5.90 1.59 -27.89 -0.04 5.85 16 8 H 0.05 1.34 6.80 -51.93 -0.35 0.98 16 9 C -0.54 -14.40 8.90 -34.44 -0.31 -14.71 16 10 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 11 C 0.08 2.09 5.24 -17.82 -0.09 2.00 16 12 N -0.87 -22.84 10.93 55.43 0.61 -22.23 16 13 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 O -0.28 -7.27 7.66 -33.52 -0.26 -7.53 16 18 C 0.32 7.63 7.47 -16.95 -0.13 7.50 16 19 N -0.50 -11.74 8.65 -13.16 -0.11 -11.85 16 20 C 0.07 1.41 11.17 -17.54 -0.20 1.21 16 21 C -0.20 -3.31 10.10 -39.46 -0.40 -3.71 16 22 C -0.15 -2.58 10.04 -39.12 -0.39 -2.97 16 23 C 0.14 2.80 6.80 -83.40 -0.57 2.23 16 24 N -0.87 -15.37 9.10 32.60 0.30 -15.07 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.14 3.35 6.22 -51.93 -0.32 3.03 16 31 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 32 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.39 5.37 8.86 -40.82 -0.36 5.01 16 37 H 0.41 7.78 8.22 -40.82 -0.34 7.44 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -30.83 322.67 -6.49 -37.32 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.72 Total: 13.98 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.38 Total: 4.88 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.79 Total: -49.15 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.02 Total: -27.47 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.83 -6.49 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218211543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.960 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds