Wall clock time and date at job start Tue Mar 31 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47351 * 2 1 4 4 C 1.34228 * 116.99996 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00124 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99677 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47044 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47091 * 54.99974 * 7 6 4 9 9 C 1.50698 * 109.47227 * 175.00160 * 7 6 4 10 10 H 1.08005 * 119.99710 * 240.00415 * 9 7 6 11 11 C 1.37879 * 120.00260 * 59.99981 * 9 7 6 12 12 N 1.31515 * 119.99416 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99919 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47575 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47065 * 120.00067 * 13 11 9 16 16 H 1.48503 * 109.46933 * 239.99590 * 13 11 9 17 17 O 1.42897 * 109.47086 * 295.00248 * 7 6 4 18 18 C 1.35785 * 116.99921 * 150.00420 * 17 7 6 19 19 N 1.32120 * 119.72933 * 0.23832 * 18 17 7 20 20 C 1.32017 * 121.72497 * 180.29289 * 19 18 17 21 21 C 1.38053 * 120.97150 * 359.73056 * 20 19 18 22 22 C 1.38762 * 119.35272 * 359.97438 * 21 20 19 23 23 C 1.38958 * 118.41685 * 0.02562 * 22 21 20 24 24 N 1.39966 * 120.50522 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46804 * 60.00190 * 1 2 3 26 26 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47076 * 299.99994 * 1 2 3 28 28 H 1.09007 * 109.47350 * 239.99989 * 2 1 3 29 29 H 1.09004 * 109.47239 * 120.00123 * 2 1 3 30 30 H 1.08998 * 109.47365 * 60.00483 * 6 4 3 31 31 H 1.09004 * 109.47133 * 300.00463 * 6 4 3 32 32 H 0.97001 * 119.99313 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.51593 * 179.70460 * 20 19 18 34 34 H 1.08006 * 120.32167 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.79221 * 180.02562 * 22 21 20 36 36 H 0.97001 * 120.00335 * 0.02562 * 24 23 22 37 37 H 0.97005 * 119.99941 * 179.72006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8573 0.0010 8 1 5.7805 2.2501 -0.8411 9 6 6.0243 4.2445 -0.1221 10 1 6.6590 4.4933 -0.9598 11 6 5.7408 5.1961 0.8345 12 7 4.9682 4.8929 1.8547 13 14 6.4539 6.9158 0.6813 14 1 7.2844 6.9998 -0.5468 15 1 5.3488 7.9046 0.6008 16 1 7.2957 7.2101 1.8688 17 8 5.8945 2.2632 1.2217 18 6 7.0524 1.5555 1.1759 19 7 7.7103 1.4486 0.0351 20 6 8.8364 0.7656 -0.0555 21 6 9.3766 0.1366 1.0483 22 6 8.7238 0.2261 2.2695 23 6 7.5405 0.9516 2.3351 24 7 6.8458 1.0700 3.5445 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5846 3.4693 0.8912 31 1 3.5850 3.4699 -0.8888 32 1 4.7684 5.5625 2.5275 33 1 9.3423 0.6975 -1.0073 34 1 10.2983 -0.4199 0.9621 35 1 9.1258 -0.2565 3.1480 36 1 7.1899 0.6441 4.3452 37 1 6.0225 1.5816 3.5828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218211543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:24 Heat of formation + Delta-G solvation = -111.433122 kcal Electronic energy + Delta-G solvation = -22430.790973 eV Core-core repulsion = 18979.770044 eV Total energy + Delta-G solvation = -3451.020928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48272 -40.99939 -38.55983 -37.38871 -35.79671 -35.00295 -32.89987 -32.23716 -31.63486 -29.25156 -28.09253 -25.08881 -24.15045 -23.36107 -22.98378 -21.47470 -19.38151 -18.78677 -18.33496 -17.75503 -17.61138 -17.30597 -17.17840 -16.49534 -16.02794 -15.75863 -15.40927 -15.13061 -14.59144 -14.35503 -13.97181 -13.86300 -13.63723 -13.38817 -12.99651 -12.95991 -12.84009 -12.81261 -12.56481 -12.46390 -12.25265 -12.04382 -11.50368 -11.44503 -11.32298 -10.97968 -10.67599 -10.12869 -9.82459 -8.19895 -7.96923 -6.35803 0.70417 0.71394 1.33206 1.39177 1.43123 1.53860 1.84558 2.40933 2.72169 3.09442 3.22992 3.26069 3.94088 3.99468 4.01159 4.13844 4.16728 4.33950 4.41492 4.49581 4.57819 4.78065 4.87391 4.90706 4.92733 5.12292 5.14353 5.16344 5.40153 5.46556 5.56305 5.75341 5.88937 6.11514 6.47712 6.64102 6.90028 7.08257 7.14992 7.40547 7.48254 8.87437 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.008047 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.646576 B = 3478.645763 C = 5258.473445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.538 6.538 6 C -0.099 4.099 7 C 0.238 3.762 8 H 0.025 0.975 9 C -0.559 4.559 10 H 0.049 0.951 11 C 0.045 3.955 12 N -0.880 5.880 13 Si 0.952 3.048 14 H -0.275 1.275 15 H -0.268 1.268 16 H -0.285 1.285 17 O -0.301 6.301 18 C 0.263 3.737 19 N -0.535 5.535 20 C 0.048 3.952 21 C -0.173 4.173 22 C -0.140 4.140 23 C 0.120 3.880 24 N -0.862 5.862 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.267 0.733 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.407 0.593 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 -8.796 1.540 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.427 6.427 6 C -0.136 4.136 7 C 0.183 3.817 8 H 0.043 0.957 9 C -0.596 4.596 10 H 0.068 0.932 11 C -0.159 4.159 12 N -0.516 5.516 13 Si 0.777 3.223 14 H -0.200 1.200 15 H -0.193 1.193 16 H -0.211 1.211 17 O -0.208 6.208 18 C 0.078 3.922 19 N -0.260 5.260 20 C -0.107 4.107 21 C -0.194 4.194 22 C -0.170 4.170 23 C 0.013 3.987 24 N -0.404 5.404 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.237 0.763 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.165 -8.577 1.126 8.917 hybrid contribution 0.592 0.543 0.731 1.087 sum -1.573 -8.034 1.857 8.394 Atomic orbital electron populations 1.21804 0.89810 1.04438 1.03730 1.23262 0.97506 0.79780 1.01911 1.86552 1.24284 1.33444 1.84103 1.24571 0.80295 0.93515 0.70747 1.90589 1.61044 1.44174 1.46943 1.21722 0.96201 0.88907 1.06794 1.19395 0.88508 0.91451 0.82336 0.95693 1.21509 1.32176 0.95974 1.09923 0.93229 1.25624 0.94259 1.01731 0.94247 1.69954 1.35403 1.35035 1.11256 0.85621 0.78619 0.80288 0.77735 1.19958 1.19265 1.21119 1.86234 1.33731 1.62372 1.38420 1.19910 0.89485 0.93443 0.89384 1.67227 1.11179 1.20830 1.26790 1.22598 0.91864 0.95934 1.00325 1.21942 1.02487 1.02776 0.92199 1.21156 0.93665 1.01769 1.00400 1.18207 0.94900 0.99203 0.86398 1.42075 1.29283 1.61719 1.07358 0.91071 0.87804 0.91408 0.91746 0.92279 0.85843 0.87004 0.92394 0.81736 0.81555 0.81835 0.76294 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 10.29 71.98 0.74 -2.08 16 2 C 0.05 1.44 6.19 71.98 0.45 1.89 16 3 O -0.37 -13.85 10.22 -51.40 -0.53 -14.37 16 4 C 0.46 20.78 7.84 71.24 0.56 21.34 16 5 O -0.54 -26.68 15.17 27.04 0.41 -26.27 16 6 C -0.10 -4.70 5.22 29.85 0.16 -4.55 16 7 C 0.24 12.73 1.59 29.85 0.05 12.78 16 8 H 0.02 1.42 6.80 -2.39 -0.02 1.40 16 9 C -0.56 -31.20 8.90 25.60 0.23 -30.97 16 10 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 11 C 0.05 2.43 5.24 84.65 0.44 2.87 16 12 N -0.88 -47.28 10.93 21.45 0.23 -47.04 16 13 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 17 O -0.30 -16.09 7.66 -77.32 -0.59 -16.69 16 18 C 0.26 13.00 7.47 84.96 0.63 13.64 16 19 N -0.54 -25.76 8.65 -308.44 -2.67 -28.43 16 20 C 0.05 1.81 11.17 84.62 0.95 2.76 16 21 C -0.17 -5.30 10.10 22.35 0.23 -5.07 16 22 C -0.14 -4.47 10.04 22.57 0.23 -4.24 16 23 C 0.12 4.85 6.80 38.32 0.26 5.11 16 24 N -0.86 -30.06 9.10 -50.78 -0.46 -30.52 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.06 1.78 8.13 -2.39 -0.02 1.77 16 30 H 0.12 6.27 6.22 -2.39 -0.01 6.25 16 31 H 0.11 4.91 8.14 -2.38 -0.02 4.89 16 32 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 34 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.41 10.58 8.86 -92.71 -0.82 9.76 16 37 H 0.40 15.51 8.22 -92.70 -0.76 14.75 16 Total: -1.00 -69.71 322.67 2.86 -66.85 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.47 Total: 38.16 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 4.91 Total: 13.47 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -2.90 Total: -105.99 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.71 Total: -57.33 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -69.71 2.86 -66.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218211543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.587 kcal (2) G-P(sol) polarization free energy of solvation -69.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds