Wall clock time and date at job start Tue Mar 31 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46765 * 2 1 4 4 C 1.34237 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99817 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46840 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47142 * 55.00440 * 7 6 4 9 9 C 1.50700 * 109.46887 * 174.99755 * 7 6 4 10 10 H 1.08002 * 120.00384 * 240.00054 * 9 7 6 11 11 C 1.37882 * 120.00035 * 60.00368 * 9 7 6 12 12 N 1.31512 * 119.99764 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00257 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46869 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47350 * 120.00064 * 13 11 9 16 16 H 1.48504 * 109.47089 * 240.00183 * 13 11 9 17 17 O 1.42899 * 109.47213 * 294.99979 * 7 6 4 18 18 C 1.42903 * 113.99629 * 150.00082 * 17 7 6 19 19 C 1.50701 * 109.46878 * 179.97438 * 18 17 7 20 20 C 1.38606 * 120.07614 * 0.02562 * 19 18 17 21 21 C 1.38889 * 117.96751 * 179.97438 * 20 19 18 22 22 C 1.38599 * 117.96874 * 0.02562 * 21 20 19 23 23 N 1.31936 * 119.84834 * 359.97438 * 22 21 20 24 24 N 1.28350 * 122.18148 * 359.72067 * 23 22 21 25 25 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47617 * 299.99643 * 1 2 3 27 27 H 1.09000 * 109.47501 * 60.00273 * 1 2 3 28 28 H 1.08994 * 109.47252 * 239.99971 * 2 1 3 29 29 H 1.09004 * 109.47044 * 119.99944 * 2 1 3 30 30 H 1.09000 * 109.47617 * 60.00227 * 6 4 3 31 31 H 1.09002 * 109.47705 * 299.99974 * 6 4 3 32 32 H 0.97005 * 119.99850 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.47382 * 59.99956 * 18 17 7 34 34 H 1.09001 * 109.46938 * 299.99942 * 18 17 7 35 35 H 1.08000 * 121.01547 * 359.97438 * 20 19 18 36 36 H 1.08004 * 121.01095 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.08048 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9205 2.9375 0.0012 7 6 5.4485 2.8574 0.0023 8 1 5.7812 2.2500 -0.8393 9 6 6.0242 4.2446 -0.1209 10 1 6.6597 4.4932 -0.9581 11 6 5.7399 5.1966 0.8351 12 7 4.9666 4.8937 1.8549 13 14 6.4540 6.9159 0.6828 14 1 7.2853 6.9995 -0.5450 15 1 5.3497 7.9052 0.6005 16 1 7.2945 7.2099 1.8713 17 8 5.8935 2.2638 1.2236 18 6 7.1168 1.5349 1.1036 19 6 7.4899 0.9557 2.4439 20 6 6.6776 1.1742 3.5455 21 6 7.0629 0.6197 4.7592 22 6 8.2361 -0.1174 4.7938 23 7 8.9466 -0.2729 3.6930 24 7 8.5876 0.2348 2.5702 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.5843 3.4694 0.8912 31 1 3.5849 3.4700 -0.8888 32 1 4.7668 5.5634 2.5277 33 1 7.9072 2.2048 0.7649 34 1 6.9898 0.7284 0.3815 35 1 5.7727 1.7578 3.4626 36 1 6.4664 0.7586 5.6488 37 1 8.5676 -0.5642 5.7195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222996461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:45 Heat of formation + Delta-G solvation = -79.252090 kcal Electronic energy + Delta-G solvation = -22002.431006 eV Core-core repulsion = 18552.805552 eV Total energy + Delta-G solvation = -3449.625454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53662 -39.74340 -37.03441 -35.78009 -33.50862 -32.66945 -32.10449 -31.57895 -30.01318 -26.50298 -26.04526 -24.10991 -23.20390 -22.19321 -21.62484 -19.84983 -17.30517 -16.98368 -16.59938 -16.32298 -16.14290 -15.71575 -15.09408 -15.02980 -14.73156 -14.41465 -13.73732 -13.58992 -13.46388 -12.86661 -12.66592 -12.55436 -12.24398 -11.79050 -11.62027 -11.26997 -11.23292 -11.04514 -10.83677 -10.69002 -10.36361 -10.13695 -10.09270 -9.83659 -9.66109 -9.40732 -9.24010 -9.19029 -8.71009 -8.04732 -6.18259 -4.35932 1.20748 1.33865 3.04547 3.18360 3.28952 3.32097 3.35478 3.96488 4.16129 4.28592 4.82075 5.00095 5.07216 5.07955 5.14213 5.14703 5.33665 5.39308 5.48222 5.56017 5.82394 5.88607 5.93657 6.07352 6.17201 6.28494 6.35783 6.42990 6.52701 6.63859 6.69569 6.89622 7.02848 7.39751 7.71164 8.02149 8.45694 8.56128 8.85451 9.09097 9.40768 10.83697 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.007618 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.098078 B = 3674.779660 C = 5971.137119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.516 6.516 6 C -0.102 4.102 7 C 0.234 3.766 8 H 0.019 0.981 9 C -0.558 4.558 10 H 0.063 0.937 11 C 0.087 3.913 12 N -0.860 5.860 13 Si 0.890 3.110 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.283 1.283 17 O -0.365 6.365 18 C 0.126 3.874 19 C 0.091 3.909 20 C -0.082 4.082 21 C -0.131 4.131 22 C 0.020 3.980 23 N -0.252 5.252 24 N -0.253 5.253 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -6.306 2.393 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.302 3.698 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.178 3.822 8 H 0.037 0.963 9 C -0.595 4.595 10 H 0.082 0.918 11 C -0.120 4.120 12 N -0.496 5.496 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.209 1.209 17 O -0.284 6.284 18 C 0.047 3.953 19 C -0.053 4.053 20 C -0.111 4.111 21 C -0.160 4.160 22 C -0.145 4.145 23 N -0.093 5.093 24 N -0.097 5.097 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.983 -7.188 2.000 8.458 hybrid contribution -0.840 1.406 0.683 1.774 sum -4.822 -5.783 2.683 7.994 Atomic orbital electron populations 1.21776 0.93374 1.02279 1.03308 1.22829 0.94805 0.81939 1.01928 1.86591 1.26400 1.30823 1.84793 1.24995 0.79306 0.94437 0.71018 1.90568 1.60203 1.43695 1.45951 1.21895 0.97546 0.87719 1.06761 1.19357 0.88031 0.91976 0.82819 0.96256 1.21534 1.32427 0.95660 1.09914 0.91850 1.24988 0.93881 0.98564 0.94532 1.69873 1.34817 1.33963 1.10932 0.86584 0.79181 0.84178 0.78337 1.19589 1.20740 1.20868 1.87886 1.36285 1.68625 1.35586 1.20550 0.90606 0.94798 0.89361 1.22945 0.91325 0.93129 0.97851 1.22464 1.01053 0.95934 0.91686 1.22405 0.97361 0.96913 0.99346 1.24126 0.93432 0.97636 0.99295 1.72949 1.26008 1.14996 0.95353 1.72758 1.13520 1.06823 1.16571 0.90907 0.91627 0.91719 0.91953 0.91866 0.84432 0.88596 0.92703 0.91307 0.92151 0.81710 0.83808 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.62 10.22 -39.28 -0.40 -7.03 16 4 C 0.46 9.40 7.84 36.00 0.28 9.68 16 5 O -0.52 -11.54 15.17 -24.06 -0.36 -11.90 16 6 C -0.10 -2.19 5.22 -27.88 -0.15 -2.34 16 7 C 0.23 5.51 1.82 -27.88 -0.05 5.46 16 8 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 9 C -0.56 -14.02 8.90 -34.44 -0.31 -14.33 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.09 2.17 5.24 -17.82 -0.09 2.08 16 12 N -0.86 -21.86 10.93 55.43 0.61 -21.25 16 13 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 O -0.37 -8.57 7.14 -49.68 -0.35 -8.93 16 18 C 0.13 2.71 6.29 36.01 0.23 2.93 16 19 C 0.09 1.86 6.86 -82.41 -0.57 1.29 16 20 C -0.08 -1.52 9.50 -39.20 -0.37 -1.89 16 21 C -0.13 -1.94 10.21 -39.21 -0.40 -2.34 16 22 C 0.02 0.29 11.31 -17.37 -0.20 0.09 16 23 N -0.25 -4.64 11.50 30.55 0.35 -4.29 16 24 N -0.25 -5.13 11.43 33.59 0.38 -4.75 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.14 3.23 6.22 -51.93 -0.32 2.90 16 31 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 32 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 35 H 0.17 3.22 7.10 -52.49 -0.37 2.85 16 36 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -29.05 325.14 -5.77 -34.82 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.86 Total: 3.22 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.01 Total: 0.51 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 1.34 Total: -30.29 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.12 Total: -27.86 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.05 -5.77 -34.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222996461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.431 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds