Wall clock time and date at job start Tue Mar 31 2020 02:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46765 * 2 1 4 4 C 1.34237 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99817 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46840 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47142 * 55.00440 * 7 6 4 9 9 C 1.50700 * 109.46887 * 174.99755 * 7 6 4 10 10 H 1.08002 * 120.00384 * 240.00054 * 9 7 6 11 11 C 1.37882 * 120.00035 * 60.00368 * 9 7 6 12 12 N 1.31512 * 119.99764 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00257 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46869 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47350 * 120.00064 * 13 11 9 16 16 H 1.48504 * 109.47089 * 240.00183 * 13 11 9 17 17 O 1.42899 * 109.47213 * 294.99979 * 7 6 4 18 18 C 1.42903 * 113.99629 * 150.00082 * 17 7 6 19 19 C 1.50701 * 109.46878 * 179.97438 * 18 17 7 20 20 C 1.38606 * 120.07614 * 0.02562 * 19 18 17 21 21 C 1.38889 * 117.96751 * 179.97438 * 20 19 18 22 22 C 1.38599 * 117.96874 * 0.02562 * 21 20 19 23 23 N 1.31936 * 119.84834 * 359.97438 * 22 21 20 24 24 N 1.28350 * 122.18148 * 359.72067 * 23 22 21 25 25 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47617 * 299.99643 * 1 2 3 27 27 H 1.09000 * 109.47501 * 60.00273 * 1 2 3 28 28 H 1.08994 * 109.47252 * 239.99971 * 2 1 3 29 29 H 1.09004 * 109.47044 * 119.99944 * 2 1 3 30 30 H 1.09000 * 109.47617 * 60.00227 * 6 4 3 31 31 H 1.09002 * 109.47705 * 299.99974 * 6 4 3 32 32 H 0.97005 * 119.99850 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.47382 * 59.99956 * 18 17 7 34 34 H 1.09001 * 109.46938 * 299.99942 * 18 17 7 35 35 H 1.08000 * 121.01547 * 359.97438 * 20 19 18 36 36 H 1.08004 * 121.01095 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.08048 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9205 2.9375 0.0012 7 6 5.4485 2.8574 0.0023 8 1 5.7812 2.2500 -0.8393 9 6 6.0242 4.2446 -0.1209 10 1 6.6597 4.4932 -0.9581 11 6 5.7399 5.1966 0.8351 12 7 4.9666 4.8937 1.8549 13 14 6.4540 6.9159 0.6828 14 1 7.2853 6.9995 -0.5450 15 1 5.3497 7.9052 0.6005 16 1 7.2945 7.2099 1.8713 17 8 5.8935 2.2638 1.2236 18 6 7.1168 1.5349 1.1036 19 6 7.4899 0.9557 2.4439 20 6 6.6776 1.1742 3.5455 21 6 7.0629 0.6197 4.7592 22 6 8.2361 -0.1174 4.7938 23 7 8.9466 -0.2729 3.6930 24 7 8.5876 0.2348 2.5702 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.5843 3.4694 0.8912 31 1 3.5849 3.4700 -0.8888 32 1 4.7668 5.5634 2.5277 33 1 7.9072 2.2048 0.7649 34 1 6.9898 0.7284 0.3815 35 1 5.7727 1.7578 3.4626 36 1 6.4664 0.7586 5.6488 37 1 8.5676 -0.5642 5.7195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222996461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:45 Heat of formation + Delta-G solvation = -96.156509 kcal Electronic energy + Delta-G solvation = -22003.164037 eV Core-core repulsion = 18552.805552 eV Total energy + Delta-G solvation = -3450.358485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92433 -41.32904 -38.75708 -37.35876 -35.25154 -34.00962 -33.73572 -32.77454 -31.66166 -28.15018 -27.81075 -25.49247 -24.54366 -23.63148 -23.19053 -21.50088 -19.00145 -18.50601 -17.98072 -17.95913 -17.62469 -17.28748 -16.69656 -16.52151 -16.31572 -16.13691 -15.25949 -15.05155 -14.90126 -14.29746 -14.04516 -13.89737 -13.61391 -13.20228 -13.13922 -12.86821 -12.81375 -12.62300 -12.48544 -12.42620 -11.93010 -11.75332 -11.46329 -11.36254 -11.15701 -11.14894 -10.77808 -10.65631 -10.61917 -9.87635 -8.09560 -6.33377 -0.12968 -0.01477 1.39202 1.42598 1.47838 1.56315 1.90451 2.43470 2.59535 2.60951 3.19026 3.61009 3.67105 3.83057 3.95819 4.02431 4.03542 4.16678 4.16856 4.36931 4.38563 4.54079 4.64033 4.66689 4.73211 4.90883 4.94525 4.96848 5.02550 5.16737 5.25603 5.34492 5.46814 5.60906 5.78285 6.11947 6.57106 6.92831 6.99550 7.45678 7.70711 8.91584 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.007618 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.098078 B = 3674.779660 C = 5971.137119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.368 6.368 4 C 0.465 3.535 5 O -0.539 6.539 6 C -0.095 4.095 7 C 0.231 3.769 8 H 0.010 0.990 9 C -0.577 4.577 10 H 0.055 0.945 11 C 0.053 3.947 12 N -0.875 5.875 13 Si 0.946 3.054 14 H -0.273 1.273 15 H -0.272 1.272 16 H -0.287 1.287 17 O -0.372 6.372 18 C 0.131 3.869 19 C 0.071 3.929 20 C -0.105 4.105 21 C -0.106 4.106 22 C 0.034 3.966 23 N -0.276 5.276 24 N -0.279 5.279 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.265 0.735 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.148 0.852 36 H 0.191 0.809 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -6.744 4.141 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.286 6.286 4 C 0.311 3.689 5 O -0.429 6.429 6 C -0.133 4.133 7 C 0.175 3.825 8 H 0.028 0.972 9 C -0.614 4.614 10 H 0.073 0.927 11 C -0.152 4.152 12 N -0.511 5.511 13 Si 0.772 3.228 14 H -0.198 1.198 15 H -0.198 1.198 16 H -0.213 1.213 17 O -0.291 6.291 18 C 0.052 3.948 19 C -0.074 4.074 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.131 4.131 23 N -0.116 5.116 24 N -0.122 5.122 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.209 0.791 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.876 -7.630 3.734 9.794 hybrid contribution -0.594 1.431 0.239 1.568 sum -5.470 -6.198 3.973 9.172 Atomic orbital electron populations 1.21802 0.90060 1.04345 1.03680 1.23238 0.97361 0.79874 1.01949 1.86559 1.24568 1.33324 1.84126 1.24607 0.80155 0.93588 0.70591 1.90558 1.61001 1.44196 1.47096 1.21671 0.96414 0.88642 1.06553 1.19349 0.89275 0.91236 0.82658 0.97187 1.21691 1.32928 0.96741 1.10079 0.92705 1.25526 0.94161 1.01291 0.94262 1.69962 1.35162 1.34807 1.11173 0.85720 0.78574 0.80752 0.77786 1.19750 1.19761 1.21272 1.87862 1.36967 1.68796 1.35484 1.20436 0.89506 0.94137 0.90766 1.22727 0.92463 0.94503 0.97681 1.22413 1.00663 0.97259 0.93005 1.22894 0.97154 0.94252 0.99158 1.24932 0.92414 0.96002 0.99750 1.72863 1.27157 1.15634 0.95991 1.72703 1.13732 1.07613 1.18172 0.87948 0.91469 0.91125 0.91657 0.92250 0.85993 0.87365 0.92521 0.92764 0.92867 0.83392 0.79140 0.76657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16 2 C 0.05 1.37 6.19 71.98 0.45 1.81 16 3 O -0.37 -13.12 10.22 -51.48 -0.53 -13.65 16 4 C 0.47 19.39 7.84 71.23 0.56 19.94 16 5 O -0.54 -24.63 15.17 27.04 0.41 -24.22 16 6 C -0.10 -4.21 5.22 29.85 0.16 -4.05 16 7 C 0.23 11.28 1.82 29.85 0.05 11.34 16 8 H 0.01 0.50 7.60 -2.39 -0.02 0.48 16 9 C -0.58 -29.81 8.90 25.60 0.23 -29.58 16 10 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 11 C 0.05 2.65 5.24 84.66 0.44 3.10 16 12 N -0.88 -44.90 10.93 21.45 0.23 -44.66 16 13 Si 0.95 40.66 29.54 68.60 2.03 42.68 16 14 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 17 O -0.37 -18.22 7.14 -135.16 -0.96 -19.18 16 18 C 0.13 5.93 6.29 71.24 0.45 6.38 16 19 C 0.07 2.95 6.86 42.63 0.29 3.24 16 20 C -0.10 -3.83 9.50 22.51 0.21 -3.61 16 21 C -0.11 -2.79 10.21 22.51 0.23 -2.56 16 22 C 0.03 0.87 11.31 84.76 0.96 1.83 16 23 N -0.28 -9.78 11.50 -57.26 -0.66 -10.44 16 24 N -0.28 -11.45 11.43 -47.63 -0.54 -12.00 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 29 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.12 5.85 6.22 -2.39 -0.01 5.84 16 31 H 0.11 4.40 8.14 -2.39 -0.02 4.38 16 32 H 0.27 12.94 8.31 -92.70 -0.77 12.17 16 33 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.05 2.42 8.08 -2.39 -0.02 2.41 16 35 H 0.15 5.90 7.10 -2.91 -0.02 5.88 16 36 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -64.52 325.14 5.82 -58.70 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.07 Total: 16.86 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 4.77 Total: 5.90 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.97 Total: -67.10 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.08 Total: -57.04 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Total: -64.52 5.82 -58.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222996461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.459 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds