Wall clock time and date at job start Tue Mar 31 2020 02:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.47236 * 2 1 4 4 C 1.34225 * 117.00119 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99941 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46761 * 179.97438 * 6 4 3 8 8 H 1.08992 * 109.47422 * 54.90225 * 7 6 4 9 9 C 1.50698 * 109.46733 * 174.90613 * 7 6 4 10 10 H 1.08005 * 119.99951 * 245.40475 * 9 7 6 11 11 C 1.37878 * 120.00406 * 65.40242 * 9 7 6 12 12 N 1.31509 * 119.99928 * 6.31096 * 11 9 7 13 13 Si 1.86797 * 119.99867 * 186.31084 * 11 9 7 14 14 H 1.48501 * 109.47486 * 84.98609 * 13 11 9 15 15 H 1.48507 * 109.47125 * 204.98764 * 13 11 9 16 16 H 1.48501 * 109.47423 * 324.98567 * 13 11 9 17 17 O 1.42896 * 109.47095 * 294.89880 * 7 6 4 18 18 C 1.42900 * 114.00051 * 150.00384 * 17 7 6 19 19 C 1.50696 * 109.47501 * 180.02562 * 18 17 7 20 20 C 1.38622 * 120.44727 * 359.97438 * 19 18 17 21 21 C 1.38572 * 118.39951 * 180.02562 * 20 19 18 22 22 N 1.32356 * 119.10632 * 359.97438 * 21 20 19 23 23 C 1.31778 * 120.81648 * 0.02562 * 22 21 20 24 24 N 1.31812 * 121.75869 * 359.72011 * 23 22 21 25 25 H 1.08997 * 109.47019 * 299.99873 * 1 2 3 26 26 H 1.09001 * 109.47315 * 60.00105 * 1 2 3 27 27 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46828 * 240.00178 * 2 1 3 29 29 H 1.08999 * 109.46964 * 120.00583 * 2 1 3 30 30 H 1.08998 * 109.47010 * 59.99811 * 6 4 3 31 31 H 1.08999 * 109.46846 * 299.99749 * 6 4 3 32 32 H 0.96994 * 120.00088 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47042 * 59.99508 * 18 17 7 34 34 H 1.09008 * 109.46706 * 300.00345 * 18 17 7 35 35 H 1.08003 * 120.80125 * 0.02562 * 20 19 18 36 36 H 1.08004 * 120.45113 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.11945 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7805 2.2485 -0.8411 9 6 6.0243 4.2443 -0.1257 10 1 6.5864 4.5179 -1.0065 11 6 5.8336 5.1640 0.8836 12 7 5.2582 4.7967 2.0077 13 14 6.3923 6.9316 0.6544 14 1 5.3337 7.6980 -0.0507 15 1 6.6474 7.5462 1.9820 16 1 7.6401 6.9560 -0.1503 17 8 5.8947 2.2653 1.2216 18 6 7.1179 1.5363 1.1017 19 6 7.4916 0.9580 2.4421 20 6 6.6858 1.1734 3.5494 21 6 7.0701 0.6223 4.7614 22 7 8.1859 -0.0871 4.8211 23 6 8.9272 -0.2711 3.7473 24 7 8.5906 0.2336 2.5771 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.5852 3.4690 0.8904 31 1 3.5843 3.4700 -0.8895 32 1 5.1236 5.4438 2.7176 33 1 7.9079 2.2056 0.7613 34 1 6.9902 0.7287 0.3807 35 1 5.7804 1.7566 3.4694 36 1 6.4669 0.7689 5.6452 37 1 9.8322 -0.8551 3.8271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223205957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:48 Heat of formation + Delta-G solvation = -87.413267 kcal Electronic energy + Delta-G solvation = -22018.873158 eV Core-core repulsion = 18568.893809 eV Total energy + Delta-G solvation = -3449.979349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48341 -39.77205 -37.00507 -35.79423 -33.73816 -32.77583 -31.64694 -31.53476 -30.08782 -26.64185 -26.04171 -23.87930 -23.20594 -22.05759 -21.62431 -19.87693 -17.32651 -17.07852 -16.61096 -16.30953 -16.11198 -15.55780 -15.07911 -14.73669 -14.64926 -14.39234 -13.73921 -13.57390 -13.47985 -13.16798 -12.77398 -12.63481 -12.24887 -11.82070 -11.47566 -11.24393 -11.15730 -10.97969 -10.84815 -10.72920 -10.40909 -10.29969 -10.15556 -9.90733 -9.62894 -9.28986 -9.03789 -8.81609 -8.68807 -8.00551 -6.13988 -4.32233 1.43395 1.47949 3.01223 3.20310 3.29835 3.30338 3.33992 4.19095 4.22432 4.30645 4.52940 5.03992 5.06272 5.08654 5.13608 5.33390 5.38167 5.46234 5.57237 5.81496 5.87619 5.91639 6.05811 6.13846 6.24521 6.30991 6.36676 6.44855 6.59069 6.78950 6.86880 6.99619 7.31981 7.49615 7.71663 8.02788 8.43917 8.49858 8.53794 8.89706 9.43490 10.87633 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.007630 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.980670 B = 3668.736760 C = 5960.043621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.514 6.514 6 C -0.098 4.098 7 C 0.234 3.766 8 H 0.018 0.982 9 C -0.565 4.565 10 H 0.062 0.938 11 C 0.088 3.912 12 N -0.849 5.849 13 Si 0.886 3.114 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.274 1.274 17 O -0.354 6.354 18 C 0.121 3.879 19 C 0.191 3.809 20 C -0.185 4.185 21 C 0.131 3.869 22 N -0.536 5.536 23 C 0.280 3.720 24 N -0.526 5.526 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.262 0.738 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -6.659 0.306 8.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.303 3.697 5 O -0.401 6.401 6 C -0.135 4.135 7 C 0.178 3.822 8 H 0.036 0.964 9 C -0.603 4.603 10 H 0.080 0.920 11 C -0.120 4.120 12 N -0.483 5.483 13 Si 0.714 3.286 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.199 1.199 17 O -0.273 6.273 18 C 0.043 3.957 19 C 0.046 3.954 20 C -0.207 4.207 21 C -0.033 4.033 22 N -0.251 5.251 23 C -0.009 4.009 24 N -0.242 5.242 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.182 0.818 36 H 0.180 0.820 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.628 -7.427 0.735 8.298 hybrid contribution -0.309 1.321 -0.246 1.379 sum -3.937 -6.105 0.489 7.281 Atomic orbital electron populations 1.21778 0.93350 1.02309 1.03307 1.22838 0.94818 0.81862 1.01970 1.86583 1.26355 1.30927 1.84775 1.24915 0.79338 0.94356 0.71105 1.90571 1.60211 1.43620 1.45747 1.21848 0.97873 0.87874 1.05944 1.19335 0.87705 0.92117 0.83029 0.96361 1.21454 1.37074 0.96593 1.05140 0.91961 1.24992 0.93938 0.98422 0.94639 1.70019 1.40355 1.33939 1.04032 0.86719 0.79356 0.84981 0.77587 1.20296 1.21180 1.19874 1.87929 1.36014 1.68482 1.34873 1.20618 0.90803 0.94696 0.89557 1.21727 0.88097 0.88845 0.96741 1.22917 1.03420 1.00861 0.93498 1.23168 0.92030 0.90497 0.97639 1.68300 1.06808 1.17050 1.32986 1.24709 0.98048 0.94802 0.83302 1.68030 1.17533 1.10967 1.27716 0.91613 0.91724 0.90879 0.91936 0.91805 0.85766 0.88435 0.92812 0.91347 0.92355 0.81850 0.82044 0.79402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -6.54 10.22 -39.24 -0.40 -6.94 16 4 C 0.46 9.30 7.84 36.01 0.28 9.58 16 5 O -0.51 -11.40 15.17 -24.03 -0.36 -11.77 16 6 C -0.10 -2.08 5.30 -27.88 -0.15 -2.22 16 7 C 0.23 5.50 1.82 -27.88 -0.05 5.44 16 8 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 9 C -0.57 -14.20 8.86 -34.44 -0.31 -14.50 16 10 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 11 C 0.09 2.20 5.23 -17.82 -0.09 2.11 16 12 N -0.85 -21.78 11.23 55.43 0.62 -21.15 16 13 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 O -0.35 -8.37 6.71 -49.58 -0.33 -8.70 16 18 C 0.12 2.62 6.30 36.00 0.23 2.85 16 19 C 0.19 3.88 6.82 -82.24 -0.56 3.32 16 20 C -0.19 -3.54 9.48 -39.32 -0.37 -3.91 16 21 C 0.13 2.16 11.30 -17.20 -0.19 1.97 16 22 N -0.54 -9.02 10.44 -14.58 -0.15 -9.18 16 23 C 0.28 4.59 12.28 -92.15 -1.13 3.46 16 24 N -0.53 -9.95 10.38 -10.80 -0.11 -10.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.12 2.85 6.89 -51.93 -0.36 2.50 16 31 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.06 1.25 8.09 -51.92 -0.42 0.83 16 35 H 0.16 3.33 7.12 -52.48 -0.37 2.96 16 36 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -28.81 325.64 -7.49 -36.30 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.90 Total: 3.94 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.74 Total: 7.99 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.36 Total: -40.39 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.10 Total: -27.41 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.81 -7.49 -36.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223205957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.116 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds