Wall clock time and date at job start Tue Mar 31 2020 02:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.47236 * 2 1 4 4 C 1.34225 * 117.00119 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99941 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46761 * 179.97438 * 6 4 3 8 8 H 1.08992 * 109.47422 * 54.90225 * 7 6 4 9 9 C 1.50698 * 109.46733 * 174.90613 * 7 6 4 10 10 H 1.08005 * 119.99951 * 245.40475 * 9 7 6 11 11 C 1.37878 * 120.00406 * 65.40242 * 9 7 6 12 12 N 1.31509 * 119.99928 * 6.31096 * 11 9 7 13 13 Si 1.86797 * 119.99867 * 186.31084 * 11 9 7 14 14 H 1.48501 * 109.47486 * 84.98609 * 13 11 9 15 15 H 1.48507 * 109.47125 * 204.98764 * 13 11 9 16 16 H 1.48501 * 109.47423 * 324.98567 * 13 11 9 17 17 O 1.42896 * 109.47095 * 294.89880 * 7 6 4 18 18 C 1.42900 * 114.00051 * 150.00384 * 17 7 6 19 19 C 1.50696 * 109.47501 * 180.02562 * 18 17 7 20 20 C 1.38622 * 120.44727 * 359.97438 * 19 18 17 21 21 C 1.38572 * 118.39951 * 180.02562 * 20 19 18 22 22 N 1.32356 * 119.10632 * 359.97438 * 21 20 19 23 23 C 1.31778 * 120.81648 * 0.02562 * 22 21 20 24 24 N 1.31812 * 121.75869 * 359.72011 * 23 22 21 25 25 H 1.08997 * 109.47019 * 299.99873 * 1 2 3 26 26 H 1.09001 * 109.47315 * 60.00105 * 1 2 3 27 27 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46828 * 240.00178 * 2 1 3 29 29 H 1.08999 * 109.46964 * 120.00583 * 2 1 3 30 30 H 1.08998 * 109.47010 * 59.99811 * 6 4 3 31 31 H 1.08999 * 109.46846 * 299.99749 * 6 4 3 32 32 H 0.96994 * 120.00088 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47042 * 59.99508 * 18 17 7 34 34 H 1.09008 * 109.46706 * 300.00345 * 18 17 7 35 35 H 1.08003 * 120.80125 * 0.02562 * 20 19 18 36 36 H 1.08004 * 120.45113 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.11945 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7805 2.2485 -0.8411 9 6 6.0243 4.2443 -0.1257 10 1 6.5864 4.5179 -1.0065 11 6 5.8336 5.1640 0.8836 12 7 5.2582 4.7967 2.0077 13 14 6.3923 6.9316 0.6544 14 1 5.3337 7.6980 -0.0507 15 1 6.6474 7.5462 1.9820 16 1 7.6401 6.9560 -0.1503 17 8 5.8947 2.2653 1.2216 18 6 7.1179 1.5363 1.1017 19 6 7.4916 0.9580 2.4421 20 6 6.6858 1.1734 3.5494 21 6 7.0701 0.6223 4.7614 22 7 8.1859 -0.0871 4.8211 23 6 8.9272 -0.2711 3.7473 24 7 8.5906 0.2336 2.5771 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.5852 3.4690 0.8904 31 1 3.5843 3.4700 -0.8895 32 1 5.1236 5.4438 2.7176 33 1 7.9079 2.2056 0.7613 34 1 6.9902 0.7287 0.3807 35 1 5.7804 1.7566 3.4694 36 1 6.4669 0.7689 5.6452 37 1 9.8322 -0.8551 3.8271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223205957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:47 Heat of formation + Delta-G solvation = -102.771331 kcal Electronic energy + Delta-G solvation = -22019.539134 eV Core-core repulsion = 18568.893809 eV Total energy + Delta-G solvation = -3450.645325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89302 -41.33903 -38.72158 -37.36238 -35.34269 -34.44744 -33.16533 -32.74547 -31.70236 -28.26338 -27.87123 -25.27154 -24.53592 -23.52898 -23.18912 -21.51348 -19.00884 -18.59370 -18.12430 -17.90877 -17.59181 -17.15882 -16.71359 -16.26212 -16.22544 -16.11560 -15.20965 -15.06368 -15.01318 -14.46971 -14.22606 -14.00928 -13.60474 -13.19550 -13.02373 -12.81471 -12.75280 -12.61060 -12.51896 -12.42428 -11.96247 -11.85818 -11.52304 -11.46171 -11.29465 -11.11607 -10.61390 -10.51935 -10.23414 -9.84322 -8.05947 -6.30083 0.00212 0.07707 1.38192 1.44786 1.48571 1.54897 1.88935 2.45004 2.64615 2.82237 3.21226 3.29720 3.63580 3.76900 4.01286 4.02869 4.15325 4.16458 4.29545 4.36991 4.53164 4.61981 4.65825 4.70038 4.79399 4.89642 4.91459 4.94583 5.05250 5.16525 5.43562 5.47154 5.60080 5.75914 6.05004 6.12737 6.57457 6.93168 7.01681 7.10565 7.48345 8.94674 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.007630 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.980670 B = 3668.736760 C = 5960.043621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.368 6.368 4 C 0.466 3.534 5 O -0.537 6.537 6 C -0.091 4.091 7 C 0.231 3.769 8 H 0.010 0.990 9 C -0.583 4.583 10 H 0.055 0.945 11 C 0.053 3.947 12 N -0.867 5.867 13 Si 0.942 3.058 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.277 1.277 17 O -0.363 6.363 18 C 0.125 3.875 19 C 0.171 3.829 20 C -0.202 4.202 21 C 0.147 3.853 22 N -0.536 5.536 23 C 0.284 3.716 24 N -0.541 5.541 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.199 0.801 37 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -7.158 1.127 8.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.286 6.286 4 C 0.311 3.689 5 O -0.427 6.427 6 C -0.129 4.129 7 C 0.174 3.826 8 H 0.028 0.972 9 C -0.620 4.620 10 H 0.074 0.926 11 C -0.153 4.153 12 N -0.501 5.501 13 Si 0.768 3.232 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.203 1.203 17 O -0.282 6.282 18 C 0.047 3.953 19 C 0.026 3.974 20 C -0.224 4.224 21 C -0.018 4.018 22 N -0.251 5.251 23 C -0.004 4.004 24 N -0.258 5.258 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.216 0.784 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.120 -7.928 1.540 9.067 hybrid contribution -0.162 1.369 -0.471 1.457 sum -4.282 -6.559 1.070 7.906 Atomic orbital electron populations 1.21804 0.90072 1.04346 1.03682 1.23241 0.97347 0.79837 1.01973 1.86551 1.24541 1.33368 1.84107 1.24541 0.80173 0.93529 0.70652 1.90559 1.61012 1.44146 1.46939 1.21630 0.96616 0.88772 1.05894 1.19346 0.89054 0.91343 0.82829 0.97179 1.21637 1.37553 0.97651 1.05153 0.92642 1.25532 0.94065 1.01349 0.94372 1.70116 1.40868 1.34769 1.04374 0.85848 0.78894 0.81230 0.77225 1.19298 1.21310 1.20259 1.87912 1.36704 1.68677 1.34904 1.20530 0.89727 0.94105 0.90908 1.21560 0.89356 0.90108 0.96337 1.22805 1.03068 1.02029 0.94473 1.23687 0.91834 0.88588 0.97674 1.68456 1.06810 1.16959 1.32885 1.25564 0.98792 0.93739 0.82300 1.68051 1.17151 1.11418 1.29164 0.91502 0.91076 0.87969 0.91573 0.92287 0.87351 0.86864 0.92819 0.92826 0.92814 0.83673 0.78385 0.75359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.29 71.98 0.74 -1.91 16 2 C 0.05 1.36 6.19 71.98 0.45 1.80 16 3 O -0.37 -12.91 10.22 -51.37 -0.52 -13.44 16 4 C 0.47 19.12 7.84 71.24 0.56 19.67 16 5 O -0.54 -24.26 15.17 27.02 0.41 -23.85 16 6 C -0.09 -3.96 5.30 29.85 0.16 -3.80 16 7 C 0.23 11.15 1.82 29.85 0.05 11.21 16 8 H 0.01 0.50 7.60 -2.39 -0.02 0.48 16 9 C -0.58 -29.88 8.86 25.60 0.23 -29.65 16 10 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 11 C 0.05 2.66 5.23 84.66 0.44 3.11 16 12 N -0.87 -44.98 11.23 21.45 0.24 -44.74 16 13 Si 0.94 40.53 29.54 68.60 2.03 42.55 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 O -0.36 -17.77 6.71 -135.26 -0.91 -18.68 16 18 C 0.13 5.65 6.30 71.23 0.45 6.10 16 19 C 0.17 7.04 6.82 42.58 0.29 7.33 16 20 C -0.20 -7.73 9.48 22.44 0.21 -7.52 16 21 C 0.15 4.59 11.30 84.69 0.96 5.55 16 22 N -0.54 -16.71 10.44 -200.05 -2.09 -18.80 16 23 C 0.28 8.69 12.28 180.88 2.22 10.92 16 24 N -0.54 -20.16 10.38 -188.07 -1.95 -22.11 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.76 8.13 -2.38 -0.02 1.74 16 29 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.11 5.09 6.89 -2.39 -0.02 5.08 16 31 H 0.11 4.43 8.14 -2.39 -0.02 4.42 16 32 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 33 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.05 2.41 8.09 -2.38 -0.02 2.39 16 35 H 0.15 6.09 7.12 -2.91 -0.02 6.07 16 36 H 0.20 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.23 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -61.97 325.64 5.03 -56.93 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.07 Total: 19.32 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.76 Total: 22.80 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.80 Total: -85.64 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -1.02 Total: -55.96 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -61.97 5.03 -56.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223205957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.838 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds