Wall clock time and date at job start Tue Mar 31 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.47134 * 2 1 4 4 C 1.34229 * 117.00099 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99607 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00092 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46994 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47701 * 54.48803 * 7 6 4 9 9 C 1.50705 * 109.47068 * 174.48838 * 7 6 4 10 10 H 1.07996 * 119.99876 * 95.21305 * 9 7 6 11 11 C 1.37875 * 119.99866 * 275.21242 * 9 7 6 12 12 N 1.31515 * 120.00190 * 355.17933 * 11 9 7 13 13 Si 1.86798 * 120.00099 * 175.17430 * 11 9 7 14 14 H 1.48499 * 109.46830 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47125 * 120.00086 * 13 11 9 16 16 H 1.48501 * 109.47406 * 240.00067 * 13 11 9 17 17 O 1.42899 * 109.46870 * 294.48500 * 7 6 4 18 18 C 1.35460 * 117.00134 * 150.00277 * 17 7 6 19 19 N 1.32333 * 119.19201 * 359.72995 * 18 17 7 20 20 C 1.32293 * 120.75461 * 179.76322 * 19 18 17 21 21 C 1.38608 * 119.17675 * 0.49788 * 20 19 18 22 22 C 1.38575 * 118.52176 * 359.75832 * 21 20 19 23 23 C 1.50697 * 120.41396 * 179.97438 * 22 21 20 24 24 N 1.32307 * 119.19724 * 180.02562 * 18 17 7 25 25 H 1.09001 * 109.46935 * 60.00487 * 1 2 3 26 26 H 1.09000 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47052 * 300.00098 * 1 2 3 28 28 H 1.09002 * 109.47116 * 239.99991 * 2 1 3 29 29 H 1.09006 * 109.46672 * 119.99916 * 2 1 3 30 30 H 1.08998 * 109.47335 * 59.99462 * 6 4 3 31 31 H 1.08998 * 109.46980 * 299.99682 * 6 4 3 32 32 H 0.97009 * 119.99808 * 5.19743 * 12 11 9 33 33 H 1.08004 * 120.40701 * 180.25349 * 20 19 18 34 34 H 1.07994 * 120.74401 * 179.76844 * 21 20 19 35 35 H 1.09009 * 109.46832 * 270.01495 * 23 22 21 36 36 H 1.08992 * 109.47144 * 30.01416 * 23 22 21 37 37 H 1.08995 * 109.47339 * 150.02370 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4486 2.8573 -0.0014 8 1 5.7796 2.2428 -0.8387 9 6 6.0242 4.2434 -0.1373 10 1 6.3145 4.7963 0.7438 11 6 6.1802 4.8056 -1.3866 12 7 5.9163 4.0985 -2.4636 13 14 6.7663 6.5718 -1.5494 14 1 6.9929 7.1446 -0.1982 15 1 8.0359 6.6031 -2.3191 16 1 5.7366 7.3715 -2.2603 17 8 5.8961 2.2738 1.2239 18 6 7.0512 1.5673 1.1829 19 7 7.6946 1.4485 0.0326 20 6 8.8276 0.7695 -0.0418 21 6 9.3328 0.1707 1.1016 22 6 8.6302 0.3111 2.2877 23 6 9.1403 -0.3226 3.5562 24 7 7.5053 1.0079 2.2925 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.5852 3.4690 0.8904 31 1 3.5844 3.4700 -0.8895 32 1 5.5405 3.2081 -2.3791 33 1 9.3502 0.6796 -0.9827 34 1 10.2536 -0.3927 1.0689 35 1 8.7328 -1.3295 3.6487 36 1 10.2286 -0.3726 3.5252 37 1 8.8282 0.2755 4.4123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225634655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:40 Heat of formation + Delta-G solvation = -106.664764 kcal Electronic energy + Delta-G solvation = -22081.876468 eV Core-core repulsion = 18631.062311 eV Total energy + Delta-G solvation = -3450.814157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.10864 -41.57264 -39.41220 -37.68772 -35.65912 -35.22991 -33.24917 -32.77813 -31.73477 -29.32494 -27.78396 -25.28881 -24.72319 -24.07615 -23.07304 -21.76038 -19.76116 -19.33494 -18.74420 -18.21570 -17.71775 -17.27337 -16.83006 -16.51656 -15.85349 -15.66770 -15.27595 -15.18070 -14.93200 -14.32583 -14.17261 -13.91631 -13.83143 -13.51986 -13.41588 -13.11710 -12.89471 -12.81340 -12.66812 -12.57675 -12.13267 -11.95452 -11.81877 -11.66628 -11.61484 -11.57041 -10.82713 -10.59414 -10.03046 -9.72434 -8.74154 -6.52452 0.15872 0.20999 1.08292 1.51832 1.55780 1.64456 1.78503 1.86008 2.50620 2.88712 3.07773 3.28305 3.57229 3.69287 3.78821 3.90696 4.02531 4.18911 4.23505 4.24762 4.31105 4.36767 4.61562 4.67468 4.75730 4.80586 4.85738 4.90489 5.01661 5.06608 5.11811 5.34819 5.43255 5.69224 5.83377 6.10593 6.39231 6.52582 6.66218 7.22375 7.34835 8.61347 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.007956 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.001863 B = 3518.544418 C = 5914.590916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.538 6.538 6 C -0.099 4.099 7 C 0.221 3.779 8 H 0.041 0.959 9 C -0.622 4.622 10 H 0.044 0.956 11 C -0.005 4.005 12 N -0.909 5.909 13 Si 1.121 2.879 14 H -0.278 1.278 15 H -0.280 1.280 16 H -0.266 1.266 17 O -0.314 6.314 18 C 0.503 3.497 19 N -0.587 5.587 20 C 0.162 3.838 21 C -0.266 4.266 22 C 0.186 3.814 23 C -0.095 4.095 24 N -0.569 5.569 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.259 0.741 33 H 0.192 0.808 34 H 0.195 0.805 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -8.899 6.209 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.428 6.428 6 C -0.137 4.137 7 C 0.165 3.835 8 H 0.059 0.941 9 C -0.659 4.659 10 H 0.062 0.938 11 C -0.206 4.206 12 N -0.544 5.544 13 Si 0.942 3.058 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.191 1.191 17 O -0.215 6.215 18 C 0.201 3.799 19 N -0.317 5.317 20 C -0.002 4.002 21 C -0.288 4.288 22 C 0.040 3.960 23 C -0.152 4.152 24 N -0.299 5.299 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.208 0.792 34 H 0.212 0.788 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.530 -7.445 5.310 9.160 hybrid contribution 0.171 -1.734 0.663 1.864 sum -0.358 -9.178 5.973 10.956 Atomic orbital electron populations 1.21814 0.89397 1.04630 1.03894 1.23340 0.97789 0.79399 1.02047 1.86536 1.23564 1.33849 1.83832 1.24332 0.80692 0.93141 0.70940 1.90602 1.61280 1.44154 1.46779 1.21903 0.95618 0.89871 1.06339 1.19944 0.88899 0.93334 0.81277 0.94098 1.22256 1.47730 1.00257 0.95703 0.93785 1.27227 0.93770 1.08630 0.90986 1.70850 1.40570 1.11976 1.31040 0.82888 0.77030 0.69806 0.76089 1.20354 1.20584 1.19089 1.85831 1.33877 1.62403 1.39432 1.20789 0.86769 0.87064 0.85244 1.68173 1.12538 1.22854 1.28159 1.23657 0.88544 0.87242 1.00774 1.22889 1.05688 1.07080 0.93149 1.22462 0.86631 0.88533 0.98345 1.20901 1.03055 1.00741 0.90462 1.67426 1.17784 1.15638 1.29054 0.91126 0.87653 0.91003 0.91923 0.91892 0.86582 0.86456 0.93100 0.79155 0.78789 0.88185 0.86410 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 10.29 71.98 0.74 -2.01 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.36 -13.43 10.22 -51.41 -0.53 -13.96 16 4 C 0.46 20.88 7.84 71.24 0.56 21.43 16 5 O -0.54 -27.32 15.18 26.91 0.41 -26.91 16 6 C -0.10 -4.67 5.50 29.85 0.16 -4.50 16 7 C 0.22 12.12 1.13 29.85 0.03 12.16 16 8 H 0.04 2.49 5.28 -2.39 -0.01 2.47 16 9 C -0.62 -35.70 8.64 25.60 0.22 -35.48 16 10 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 11 C 0.00 -0.26 5.45 84.65 0.46 0.20 16 12 N -0.91 -53.55 13.63 21.45 0.29 -53.26 16 13 Si 1.12 49.43 29.91 68.60 2.05 51.49 16 14 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 17 O -0.31 -17.47 9.09 -74.24 -0.68 -18.14 16 18 C 0.50 26.00 8.45 180.57 1.53 27.53 16 19 N -0.59 -29.07 8.66 -313.45 -2.71 -31.78 16 20 C 0.16 5.92 11.30 84.71 0.96 6.88 16 21 C -0.27 -7.60 9.85 22.44 0.22 -7.38 16 22 C 0.19 6.08 6.82 42.56 0.29 6.37 16 23 C -0.09 -1.90 10.22 71.23 0.73 -1.17 16 24 N -0.57 -25.51 10.40 -301.51 -3.14 -28.65 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16 29 H 0.06 1.87 8.13 -2.38 -0.02 1.85 16 30 H 0.12 5.02 8.14 -2.39 -0.02 5.00 16 31 H 0.12 5.44 8.14 -2.39 -0.02 5.42 16 32 H 0.26 15.69 6.66 -92.70 -0.62 15.08 16 33 H 0.19 5.45 8.06 -2.91 -0.02 5.43 16 34 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.12 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -79.53 327.31 3.28 -76.25 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.23 Total: 19.11 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.35 Total: 25.86 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -5.56 Total: -113.69 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -0.79 Total: -59.01 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.49 kcal Total: -79.53 3.28 -76.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225634655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.416 kcal (2) G-P(sol) polarization free energy of solvation -79.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds