Wall clock time and date at job start Tue Mar 31 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47589 * 2 1 4 4 C 1.34222 * 117.00620 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99551 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00277 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47053 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46786 * 55.00209 * 7 6 4 9 9 C 1.50697 * 109.46970 * 174.99936 * 7 6 4 10 10 H 1.07997 * 120.00194 * 239.99903 * 9 7 6 11 11 C 1.37879 * 120.00123 * 60.00437 * 9 7 6 12 12 N 1.31518 * 120.00010 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00107 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47099 * 60.00066 * 13 11 9 15 15 H 1.48503 * 109.46735 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47153 * 299.99658 * 13 11 9 17 17 O 1.42898 * 109.46973 * 295.00052 * 7 6 4 18 18 C 1.35676 * 116.99589 * 150.00220 * 17 7 6 19 19 C 1.38786 * 119.63638 * 179.72562 * 18 17 7 20 20 C 1.38588 * 119.27402 * 180.28072 * 19 18 17 21 21 C 1.38501 * 118.56855 * 359.97438 * 20 19 18 22 22 C 1.38974 * 119.22440 * 359.97438 * 21 20 19 23 23 N 1.38998 * 119.67123 * 179.97438 * 22 21 20 24 24 N 1.32324 * 119.64288 * 359.97438 * 18 17 7 25 25 H 1.09005 * 109.46848 * 300.00561 * 1 2 3 26 26 H 1.09000 * 109.46700 * 59.99955 * 1 2 3 27 27 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47211 * 239.99779 * 2 1 3 29 29 H 1.09008 * 109.47232 * 119.99733 * 2 1 3 30 30 H 1.08995 * 109.47022 * 60.00153 * 6 4 3 31 31 H 1.08995 * 109.47439 * 300.00057 * 6 4 3 32 32 H 0.96990 * 120.00167 * 180.02562 * 12 11 9 33 33 H 1.07993 * 120.36428 * 0.25629 * 19 18 17 34 34 H 1.07999 * 120.71476 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.38558 * 180.02562 * 21 20 19 36 36 H 0.96997 * 119.99747 * 180.02562 * 23 22 21 37 37 H 0.96997 * 119.99725 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8572 0.0014 8 1 5.7814 2.2490 -0.8397 9 6 6.0245 4.2443 -0.1230 10 1 6.6601 4.4921 -0.9603 11 6 5.7401 5.1971 0.8322 12 7 4.9659 4.8955 1.8517 13 14 6.4545 6.9162 0.6784 14 1 5.9928 7.5323 -0.5914 15 1 6.0006 7.7451 1.8240 16 1 7.9374 6.8380 0.6802 17 8 5.8934 2.2646 1.2233 18 6 7.0504 1.5573 1.1794 19 6 7.5359 0.9633 2.3359 20 6 8.7215 0.2474 2.2838 21 6 9.3833 0.1496 1.0711 22 6 8.8414 0.7678 -0.0495 23 7 9.4981 0.6760 -1.2711 24 7 7.7062 1.4456 0.0355 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.5845 3.4700 0.8895 31 1 3.5853 3.4690 -0.8904 32 1 4.7655 5.5658 2.5234 33 1 6.9960 1.0581 3.2664 34 1 9.1207 -0.2239 3.1697 35 1 10.3092 -0.4015 0.9969 36 1 9.1244 1.1060 -2.0561 37 1 10.3301 0.1820 -1.3385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225754186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:27 Heat of formation + Delta-G solvation = -89.167588 kcal Electronic energy + Delta-G solvation = -22214.289500 eV Core-core repulsion = 18764.234078 eV Total energy + Delta-G solvation = -3450.055422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80503 -39.41143 -37.09930 -35.81024 -33.96913 -32.92713 -31.54804 -31.16397 -30.20246 -27.86868 -26.14977 -23.35466 -22.65557 -22.02482 -21.37207 -19.76478 -17.80824 -17.10901 -16.79617 -16.08831 -15.98666 -15.50066 -15.24600 -15.02956 -14.54092 -14.20391 -14.04591 -13.75639 -13.00859 -12.85747 -12.55283 -12.45818 -12.11260 -11.94027 -11.56350 -11.42232 -11.23931 -11.12458 -10.96409 -10.77623 -10.52190 -10.09076 -9.95246 -9.63711 -9.43785 -9.19168 -8.71109 -8.52811 -8.26105 -6.92849 -6.14205 -4.30950 2.22855 2.31465 3.08242 3.25118 3.31121 3.33314 3.39116 4.01733 4.32560 4.54584 4.83168 5.11907 5.17387 5.21954 5.38073 5.42599 5.52583 5.81024 5.90498 5.93120 5.98965 6.06780 6.11687 6.26272 6.42039 6.67858 6.77447 6.86270 7.02947 7.08047 7.23876 7.41733 7.77439 7.87005 7.92438 8.07566 8.56938 8.62714 8.92971 9.10446 9.44643 10.87734 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.007696 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.984624 B = 3637.245921 C = 5548.605824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.105 4.105 7 C 0.229 3.771 8 H 0.051 0.949 9 C -0.541 4.541 10 H 0.066 0.934 11 C 0.080 3.920 12 N -0.864 5.864 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.276 1.276 17 O -0.276 6.276 18 C 0.414 3.586 19 C -0.271 4.271 20 C -0.010 4.010 21 C -0.312 4.312 22 C 0.436 3.564 23 N -0.859 5.859 24 N -0.584 5.584 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.266 0.734 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.400 0.600 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -8.009 -2.461 8.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.401 6.401 6 C -0.142 4.142 7 C 0.174 3.826 8 H 0.069 0.931 9 C -0.578 4.578 10 H 0.084 0.916 11 C -0.126 4.126 12 N -0.500 5.500 13 Si 0.723 3.277 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.201 1.201 17 O -0.179 6.179 18 C 0.232 3.768 19 C -0.293 4.293 20 C -0.035 4.035 21 C -0.337 4.337 22 C 0.198 3.802 23 N -0.402 5.402 24 N -0.319 5.319 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.228 0.772 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.982 -7.771 -2.736 8.297 hybrid contribution 0.983 0.392 0.245 1.087 sum 0.002 -7.380 -2.491 7.789 Atomic orbital electron populations 1.21775 0.93339 1.02272 1.03308 1.22843 0.94806 0.81907 1.01982 1.86578 1.26258 1.30881 1.84802 1.24952 0.79420 0.94390 0.71210 1.90603 1.60170 1.43613 1.45726 1.21928 0.97231 0.88003 1.07072 1.19680 0.87577 0.92710 0.82619 0.93082 1.21325 1.31879 0.94555 1.10080 0.91581 1.25091 0.93982 0.98940 0.94588 1.69847 1.34727 1.34431 1.11026 0.86599 0.79780 0.83581 0.77734 1.19924 1.21046 1.20129 1.86448 1.32348 1.60132 1.38997 1.19500 0.85486 0.84404 0.87384 1.20736 1.00778 1.09259 0.98571 1.20853 0.92525 0.93578 0.96571 1.20825 1.05285 1.14050 0.93530 1.17938 0.87843 0.88353 0.86023 1.42145 1.27803 1.61814 1.08488 1.66781 1.10437 1.25724 1.28925 0.91602 0.91731 0.90892 0.91962 0.91785 0.84377 0.88058 0.92355 0.85560 0.85757 0.86588 0.77173 0.77043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.29 37.16 0.38 -1.30 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -7.00 10.22 -39.24 -0.40 -7.40 16 4 C 0.46 10.06 7.84 36.00 0.28 10.34 16 5 O -0.51 -12.46 15.17 -24.05 -0.36 -12.82 16 6 C -0.10 -2.43 5.22 -27.88 -0.15 -2.58 16 7 C 0.23 5.89 1.59 -27.88 -0.04 5.85 16 8 H 0.05 1.36 6.79 -51.93 -0.35 1.00 16 9 C -0.54 -14.60 8.90 -34.44 -0.31 -14.91 16 10 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 11 C 0.08 2.13 5.24 -17.82 -0.09 2.04 16 12 N -0.86 -23.41 10.93 55.43 0.61 -22.80 16 13 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 O -0.28 -7.38 8.38 -33.16 -0.28 -7.65 16 18 C 0.41 10.20 7.44 -17.14 -0.13 10.07 16 19 C -0.27 -5.78 10.04 -39.25 -0.39 -6.17 16 20 C -0.01 -0.18 10.16 -39.36 -0.40 -0.58 16 21 C -0.31 -5.38 9.93 -39.21 -0.39 -5.77 16 22 C 0.44 8.41 7.74 -155.01 -1.20 7.21 16 23 N -0.86 -12.55 9.07 31.11 0.28 -12.26 16 24 N -0.58 -13.63 8.67 -12.51 -0.11 -13.73 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.06 0.99 8.13 -51.92 -0.42 0.57 16 30 H 0.14 3.45 6.22 -51.93 -0.32 3.12 16 31 H 0.10 2.15 8.14 -51.93 -0.42 1.72 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 34 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.40 5.69 8.95 -40.82 -0.37 5.32 16 37 H 0.40 4.35 8.82 -40.82 -0.36 3.99 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -31.82 323.80 -7.36 -39.18 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -4.75 Total: 11.61 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.21 Total: 5.33 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.78 Total: -48.80 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.04 Total: -27.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.82 -7.36 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225754186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.988 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds