Wall clock time and date at job start Tue Mar 31 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47589 * 2 1 4 4 C 1.34222 * 117.00620 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99551 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00277 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47053 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46786 * 55.00209 * 7 6 4 9 9 C 1.50697 * 109.46970 * 174.99936 * 7 6 4 10 10 H 1.07997 * 120.00194 * 239.99903 * 9 7 6 11 11 C 1.37879 * 120.00123 * 60.00437 * 9 7 6 12 12 N 1.31518 * 120.00010 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00107 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47099 * 60.00066 * 13 11 9 15 15 H 1.48503 * 109.46735 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47153 * 299.99658 * 13 11 9 17 17 O 1.42898 * 109.46973 * 295.00052 * 7 6 4 18 18 C 1.35676 * 116.99589 * 150.00220 * 17 7 6 19 19 C 1.38786 * 119.63638 * 179.72562 * 18 17 7 20 20 C 1.38588 * 119.27402 * 180.28072 * 19 18 17 21 21 C 1.38501 * 118.56855 * 359.97438 * 20 19 18 22 22 C 1.38974 * 119.22440 * 359.97438 * 21 20 19 23 23 N 1.38998 * 119.67123 * 179.97438 * 22 21 20 24 24 N 1.32324 * 119.64288 * 359.97438 * 18 17 7 25 25 H 1.09005 * 109.46848 * 300.00561 * 1 2 3 26 26 H 1.09000 * 109.46700 * 59.99955 * 1 2 3 27 27 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47211 * 239.99779 * 2 1 3 29 29 H 1.09008 * 109.47232 * 119.99733 * 2 1 3 30 30 H 1.08995 * 109.47022 * 60.00153 * 6 4 3 31 31 H 1.08995 * 109.47439 * 300.00057 * 6 4 3 32 32 H 0.96990 * 120.00167 * 180.02562 * 12 11 9 33 33 H 1.07993 * 120.36428 * 0.25629 * 19 18 17 34 34 H 1.07999 * 120.71476 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.38558 * 180.02562 * 21 20 19 36 36 H 0.96997 * 119.99747 * 180.02562 * 23 22 21 37 37 H 0.96997 * 119.99725 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8572 0.0014 8 1 5.7814 2.2490 -0.8397 9 6 6.0245 4.2443 -0.1230 10 1 6.6601 4.4921 -0.9603 11 6 5.7401 5.1971 0.8322 12 7 4.9659 4.8955 1.8517 13 14 6.4545 6.9162 0.6784 14 1 5.9928 7.5323 -0.5914 15 1 6.0006 7.7451 1.8240 16 1 7.9374 6.8380 0.6802 17 8 5.8934 2.2646 1.2233 18 6 7.0504 1.5573 1.1794 19 6 7.5359 0.9633 2.3359 20 6 8.7215 0.2474 2.2838 21 6 9.3833 0.1496 1.0711 22 6 8.8414 0.7678 -0.0495 23 7 9.4981 0.6760 -1.2711 24 7 7.7062 1.4456 0.0355 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.5845 3.4700 0.8895 31 1 3.5853 3.4690 -0.8904 32 1 4.7655 5.5658 2.5234 33 1 6.9960 1.0581 3.2664 34 1 9.1207 -0.2239 3.1697 35 1 10.3092 -0.4015 0.9969 36 1 9.1244 1.1060 -2.0561 37 1 10.3301 0.1820 -1.3385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225754186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:26 Heat of formation + Delta-G solvation = -110.599520 kcal Electronic energy + Delta-G solvation = -22215.218859 eV Core-core repulsion = 18764.234078 eV Total energy + Delta-G solvation = -3450.984781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49843 -41.00163 -38.81681 -37.46431 -35.55466 -34.70038 -32.91945 -32.68876 -31.92608 -29.37921 -28.08393 -24.96197 -24.02360 -23.58247 -22.97731 -21.50757 -19.57376 -18.81363 -18.30740 -17.73953 -17.56444 -17.23373 -16.74994 -16.59940 -16.32507 -15.83555 -15.66173 -15.19501 -14.62906 -14.39085 -13.97454 -13.83634 -13.65895 -13.54575 -13.13585 -12.96133 -12.82092 -12.74699 -12.57876 -12.47131 -12.35656 -11.59426 -11.50943 -11.42575 -11.32591 -10.89609 -10.69081 -10.19554 -9.92180 -8.44340 -8.13487 -6.39042 0.73758 0.74668 1.31674 1.41945 1.43145 1.51240 1.83718 2.39980 2.63437 2.85408 3.23864 3.26654 3.94152 3.98922 4.00140 4.13650 4.34057 4.40890 4.47323 4.53174 4.57994 4.74004 4.83843 4.90722 4.92836 5.09656 5.14396 5.23308 5.40836 5.53013 5.54010 5.71140 5.80014 6.07828 6.46172 6.60689 6.69296 6.88594 7.10204 7.39810 7.59606 8.86417 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.007696 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.984624 B = 3637.245921 C = 5548.605824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.539 6.539 6 C -0.100 4.100 7 C 0.235 3.765 8 H 0.031 0.969 9 C -0.560 4.560 10 H 0.054 0.946 11 C 0.042 3.958 12 N -0.884 5.884 13 Si 0.956 3.044 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.283 1.283 17 O -0.303 6.303 18 C 0.371 3.629 19 C -0.296 4.296 20 C 0.001 3.999 21 C -0.296 4.296 22 C 0.416 3.584 23 N -0.840 5.840 24 N -0.617 5.617 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.268 0.732 33 H 0.124 0.876 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.401 0.599 37 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -8.916 -2.471 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.138 4.138 7 C 0.180 3.820 8 H 0.049 0.951 9 C -0.598 4.598 10 H 0.072 0.928 11 C -0.162 4.162 12 N -0.520 5.520 13 Si 0.781 3.219 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.209 1.209 17 O -0.208 6.208 18 C 0.191 3.809 19 C -0.319 4.319 20 C -0.024 4.024 21 C -0.321 4.321 22 C 0.178 3.822 23 N -0.385 5.385 24 N -0.353 5.353 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.230 0.770 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.086 -8.701 -2.777 9.134 hybrid contribution 0.798 0.502 0.205 0.965 sum 0.711 -8.199 -2.572 8.622 Atomic orbital electron populations 1.21805 0.89761 1.04465 1.03735 1.23280 0.97547 0.79733 1.01964 1.86546 1.24206 1.33521 1.84067 1.24560 0.80344 0.93493 0.70706 1.90584 1.61078 1.44189 1.47033 1.21734 0.96191 0.88980 1.06860 1.19491 0.88686 0.91715 0.82115 0.95134 1.21440 1.32375 0.95740 1.10197 0.92811 1.25715 0.94223 1.02125 0.94138 1.69960 1.35322 1.35375 1.11380 0.85668 0.78353 0.79569 0.78329 1.18694 1.20207 1.20938 1.86367 1.33987 1.61442 1.38985 1.19929 0.85765 0.86177 0.89044 1.20950 1.02663 1.10737 0.97572 1.21371 0.90668 0.91828 0.98527 1.21350 1.06101 1.12309 0.92337 1.18468 0.87284 0.88240 0.88217 1.42091 1.28060 1.61265 1.07114 1.66680 1.12221 1.27345 1.29031 0.91456 0.91015 0.87755 0.91634 0.92287 0.86014 0.86692 0.92248 0.85828 0.81180 0.82068 0.76982 0.74631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 10.29 71.98 0.74 -2.13 16 2 C 0.05 1.45 6.19 71.98 0.45 1.89 16 3 O -0.37 -14.08 10.22 -51.34 -0.52 -14.60 16 4 C 0.46 21.17 7.84 71.23 0.56 21.73 16 5 O -0.54 -27.15 15.17 27.03 0.41 -26.74 16 6 C -0.10 -4.85 5.22 29.85 0.16 -4.70 16 7 C 0.23 12.70 1.59 29.85 0.05 12.74 16 8 H 0.03 1.72 6.79 -2.39 -0.02 1.71 16 9 C -0.56 -31.39 8.90 25.60 0.23 -31.16 16 10 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 11 C 0.04 2.28 5.24 84.65 0.44 2.73 16 12 N -0.88 -49.12 10.93 21.45 0.23 -48.89 16 13 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 O -0.30 -17.00 8.38 -76.14 -0.64 -17.64 16 18 C 0.37 18.93 7.44 84.75 0.63 19.56 16 19 C -0.30 -12.78 10.04 22.48 0.23 -12.55 16 20 C 0.00 0.03 10.16 22.42 0.23 0.26 16 21 C -0.30 -9.29 9.93 22.51 0.22 -9.07 16 22 C 0.42 15.59 7.74 133.00 1.03 16.62 16 23 N -0.84 -23.05 9.07 -55.49 -0.50 -23.56 16 24 N -0.62 -29.48 8.67 -306.32 -2.66 -32.14 16 25 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 29 H 0.06 1.82 8.13 -2.38 -0.02 1.80 16 30 H 0.12 6.35 6.22 -2.39 -0.01 6.34 16 31 H 0.12 5.07 8.14 -2.39 -0.02 5.05 16 32 H 0.27 14.11 8.31 -92.72 -0.77 13.34 16 33 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 34 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.40 11.07 8.95 -92.71 -0.83 10.24 16 37 H 0.42 7.85 8.82 -92.71 -0.82 7.03 16 Total: -1.00 -72.25 323.80 2.77 -69.49 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.54 Total: 33.14 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 4.96 Total: 15.93 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -2.93 Total: -104.58 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -0.75 Total: -58.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.25 2.77 -69.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225754186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.114 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds