Wall clock time and date at job start Tue Mar 31 2020 02:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47017 * 54.99761 * 7 6 4 9 9 C 1.50698 * 109.47721 * 174.99887 * 7 6 4 10 10 H 1.07994 * 120.00417 * 240.00789 * 9 7 6 11 11 C 1.37880 * 119.99699 * 59.99248 * 9 7 6 12 12 N 1.31511 * 120.00362 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99897 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47085 * 60.00587 * 13 11 9 15 15 H 1.48501 * 109.47121 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47160 * 300.00632 * 13 11 9 17 17 O 1.42903 * 109.47386 * 295.00166 * 7 6 4 18 18 C 1.35688 * 117.00467 * 150.00038 * 17 7 6 19 19 N 1.32370 * 120.13693 * 359.72007 * 18 17 7 20 20 N 1.28355 * 122.09416 * 179.75209 * 19 18 17 21 21 C 1.31837 * 122.25720 * 0.53909 * 20 19 18 22 22 C 1.38719 * 119.97722 * 359.73765 * 21 20 19 23 23 C 1.38684 * 118.02159 * 359.97438 * 22 21 20 24 24 C 1.50698 * 121.03374 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 26 26 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 28 28 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 29 29 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 31 31 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 32 32 H 0.96992 * 120.00719 * 179.97438 * 12 11 9 33 33 H 1.08004 * 120.00822 * 179.71428 * 21 20 19 34 34 H 1.07999 * 120.98952 * 180.02562 * 22 21 20 35 35 H 1.09003 * 109.47378 * 269.97800 * 24 23 22 36 36 H 1.08998 * 109.47381 * 29.98246 * 24 23 22 37 37 H 1.09004 * 109.46793 * 149.98584 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7805 2.2499 -0.8423 9 6 6.0244 4.2445 -0.1234 10 1 6.6590 4.4932 -0.9611 11 6 5.7407 5.1961 0.8331 12 7 4.9681 4.8932 1.8533 13 14 6.4539 6.9158 0.6799 14 1 5.9900 7.5329 -0.5886 15 1 6.0022 7.7430 1.8275 16 1 7.9369 6.8385 0.6794 17 8 5.8946 2.2632 1.2206 18 6 7.0517 1.5559 1.1749 19 7 7.7120 1.4349 0.0340 20 7 8.8118 0.7788 -0.0511 21 6 9.3521 0.1732 0.9879 22 6 8.7322 0.2375 2.2272 23 6 7.5465 0.9500 2.3265 24 6 6.8165 1.0643 3.6399 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5844 3.4700 -0.8895 31 1 3.5852 3.4690 0.8905 32 1 4.7688 5.5625 2.5264 33 1 10.2769 -0.3730 0.8741 34 1 9.1606 -0.2520 3.0893 35 1 6.1097 0.2400 3.7357 36 1 7.5342 1.0246 4.4592 37 1 6.2773 2.0110 3.6746 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226638519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:33 Heat of formation + Delta-G solvation = -95.809264 kcal Electronic energy + Delta-G solvation = -22445.197066 eV Core-core repulsion = 18994.853638 eV Total energy + Delta-G solvation = -3450.343427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92726 -41.39651 -39.11802 -37.52206 -35.55132 -34.87289 -32.99809 -32.50938 -31.63594 -28.92370 -28.19198 -25.48684 -24.39243 -23.77086 -23.14320 -21.60355 -19.72681 -18.81487 -18.41595 -17.80731 -17.52902 -17.22082 -16.71376 -16.55713 -16.30491 -15.37291 -14.95839 -14.83096 -14.73744 -14.01962 -13.95622 -13.77505 -13.72303 -13.61334 -13.27073 -13.20967 -12.98653 -12.85600 -12.62623 -12.48927 -12.37161 -11.87801 -11.59506 -11.52058 -11.45051 -11.24526 -10.76550 -10.72607 -10.26639 -9.52865 -8.21022 -6.45250 -0.00870 0.39669 1.27619 1.40123 1.41490 1.49606 1.79925 2.36721 2.47254 2.82512 3.12297 3.49211 3.71282 3.81455 3.93547 3.98465 4.11262 4.15345 4.26559 4.32663 4.48247 4.61795 4.69262 4.74305 4.84408 4.91452 4.93088 4.97373 5.07670 5.12834 5.25629 5.36403 5.49297 5.57575 5.68481 5.99285 6.47840 6.81164 6.87203 7.32904 7.99634 8.80300 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.008044 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.916324 B = 3480.124806 C = 5254.075770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.542 6.542 6 C -0.097 4.097 7 C 0.229 3.771 8 H 0.026 0.974 9 C -0.567 4.567 10 H 0.052 0.948 11 C 0.049 3.951 12 N -0.878 5.878 13 Si 0.954 3.046 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.285 1.285 17 O -0.285 6.285 18 C 0.271 3.729 19 N -0.341 5.341 20 N -0.259 5.259 21 C -0.012 4.012 22 C -0.081 4.081 23 C -0.137 4.137 24 C -0.092 4.092 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.271 0.729 33 H 0.211 0.789 34 H 0.200 0.800 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -8.757 4.104 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.135 4.135 7 C 0.175 3.825 8 H 0.044 0.956 9 C -0.604 4.604 10 H 0.070 0.930 11 C -0.157 4.157 12 N -0.514 5.514 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.211 1.211 17 O -0.188 6.188 18 C 0.084 3.916 19 N -0.198 5.198 20 N -0.100 5.100 21 C -0.180 4.180 22 C -0.109 4.109 23 C -0.150 4.150 24 C -0.149 4.149 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.217 0.783 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.653 -8.516 2.867 9.369 hybrid contribution 0.384 0.544 0.973 1.179 sum -2.269 -7.972 3.840 9.135 Atomic orbital electron populations 1.21807 0.89745 1.04476 1.03766 1.23283 0.97559 0.79677 1.01988 1.86547 1.24075 1.33550 1.83993 1.24534 0.80395 0.93418 0.70635 1.90582 1.61139 1.44255 1.47195 1.21700 0.95479 0.89106 1.07211 1.19613 0.89288 0.91808 0.81800 0.95555 1.21435 1.32844 0.95728 1.10429 0.93004 1.25643 0.94045 1.01914 0.94054 1.69921 1.34833 1.35512 1.11087 0.85699 0.78312 0.79631 0.78498 1.18827 1.19733 1.21134 1.86370 1.32527 1.60877 1.38986 1.21881 0.88746 0.89038 0.91892 1.72983 1.05096 1.17978 1.23771 1.72565 1.03209 1.04464 1.29807 1.24717 1.03023 1.00162 0.90089 1.22623 0.92229 0.95458 1.00575 1.20893 0.98295 0.99652 0.96121 1.20563 1.00220 1.02528 0.91570 0.91087 0.87772 0.91336 0.91769 0.92101 0.86544 0.85514 0.91964 0.77259 0.78272 0.90330 0.87749 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.29 71.98 0.74 -2.03 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.36 -13.59 10.22 -51.41 -0.53 -14.12 16 4 C 0.46 20.65 7.84 71.24 0.56 21.20 16 5 O -0.54 -26.69 15.17 27.04 0.41 -26.28 16 6 C -0.10 -4.60 5.22 29.85 0.16 -4.45 16 7 C 0.23 12.28 1.60 29.85 0.05 12.33 16 8 H 0.03 1.51 6.81 -2.38 -0.02 1.49 16 9 C -0.57 -31.67 8.90 25.60 0.23 -31.44 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.05 2.57 5.24 84.66 0.44 3.01 16 12 N -0.88 -46.60 10.93 21.45 0.23 -46.37 16 13 Si 0.95 42.32 29.54 68.60 2.03 44.34 16 14 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 O -0.29 -15.23 7.57 -76.25 -0.58 -15.80 16 18 C 0.27 13.37 7.51 84.85 0.64 14.01 16 19 N -0.34 -17.42 9.84 -170.23 -1.67 -19.09 16 20 N -0.26 -11.25 11.49 -57.24 -0.66 -11.91 16 21 C -0.01 -0.36 11.31 84.81 0.96 0.60 16 22 C -0.08 -2.33 9.92 22.49 0.22 -2.11 16 23 C -0.14 -5.25 5.94 -19.52 -0.12 -5.37 16 24 C -0.09 -2.93 9.87 71.24 0.70 -2.23 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 29 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.12 5.04 8.14 -2.39 -0.02 5.02 16 31 H 0.13 6.34 6.22 -2.39 -0.01 6.33 16 32 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 33 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.10 2.40 8.11 -2.39 -0.02 2.38 16 37 H 0.05 2.04 7.63 -2.38 -0.02 2.02 16 Total: -1.00 -72.45 323.89 5.34 -67.11 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.08 Total: 16.74 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.03 Total: 5.38 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.10 Total: -77.37 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.69 Total: -56.20 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.45 5.34 -67.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226638519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.698 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds