Wall clock time and date at job start Tue Mar 31 2020 02:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47234 * 2 1 4 4 C 1.34237 * 117.00132 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99533 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00120 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47261 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.46786 * 54.99808 * 7 6 4 9 9 C 1.50691 * 109.47561 * 174.99939 * 7 6 4 10 10 H 1.08005 * 120.00240 * 240.00420 * 9 7 6 11 11 C 1.37879 * 119.99969 * 59.99912 * 9 7 6 12 12 N 1.31518 * 119.99917 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 120.00299 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.46965 * 90.00111 * 13 11 9 15 15 H 1.48499 * 109.47132 * 210.00328 * 13 11 9 16 16 H 1.48503 * 109.46810 * 330.00403 * 13 11 9 17 17 O 1.42901 * 109.47245 * 295.00499 * 7 6 4 18 18 C 1.36019 * 117.00288 * 155.62738 * 17 7 6 19 19 C 1.39266 * 120.38826 * 5.41375 * 18 17 7 20 20 C 1.38297 * 118.46404 * 179.97438 * 19 18 17 21 21 C 1.39090 * 119.14837 * 359.97438 * 20 19 18 22 22 N 1.39253 * 119.64473 * 180.02562 * 21 20 19 23 23 N 1.32327 * 120.71120 * 0.02562 * 21 20 19 24 24 C 1.32004 * 121.67540 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.47320 * 59.99538 * 1 2 3 26 26 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46751 * 299.99735 * 1 2 3 28 28 H 1.09000 * 109.46751 * 240.00264 * 2 1 3 29 29 H 1.09000 * 109.47320 * 120.00462 * 2 1 3 30 30 H 1.09003 * 109.46812 * 60.00483 * 6 4 3 31 31 H 1.08999 * 109.47561 * 299.99682 * 6 4 3 32 32 H 0.97001 * 120.00079 * 179.97438 * 12 11 9 33 33 H 1.08004 * 120.76392 * 359.95341 * 19 18 17 34 34 H 1.07993 * 120.42584 * 179.97438 * 20 19 18 35 35 H 0.96998 * 120.00334 * 180.02562 * 22 21 20 36 36 H 0.97003 * 119.99940 * 359.97438 * 22 21 20 37 37 H 1.07996 * 119.60937 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7806 2.2499 -0.8422 9 6 6.0245 4.2443 -0.1234 10 1 6.6592 4.4931 -0.9611 11 6 5.7410 5.1960 0.8332 12 7 4.9684 4.8930 1.8534 13 14 6.4541 6.9158 0.6800 14 1 5.5190 7.7724 -0.0926 15 1 6.6500 7.4928 2.0342 16 1 7.7603 6.8491 -0.0234 17 8 5.8947 2.2631 1.2206 18 6 7.1112 1.6548 1.2030 19 6 7.9166 1.7230 0.0690 20 6 9.1462 1.0905 0.0948 21 6 9.5352 0.4123 1.2452 22 7 10.7713 -0.2278 1.2827 23 7 8.7432 0.3687 2.3044 24 6 7.5637 0.9614 2.3128 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.5854 3.4689 0.8906 31 1 3.5846 3.4700 -0.8895 32 1 4.7692 5.5624 2.5266 33 1 7.5884 2.2572 -0.8104 34 1 9.7961 1.1228 -0.7671 35 1 11.0476 -0.7026 2.0821 36 1 11.3558 -0.1994 0.5090 37 1 6.9444 0.9049 3.1958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226777283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:29 Heat of formation + Delta-G solvation = -90.454013 kcal Electronic energy + Delta-G solvation = -22055.931230 eV Core-core repulsion = 18605.820024 eV Total energy + Delta-G solvation = -3450.111206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.86756 -39.47048 -37.31355 -35.88229 -33.85936 -32.91181 -31.58806 -31.29628 -30.32857 -27.49373 -26.32951 -23.38264 -23.03714 -22.17764 -21.18527 -19.77977 -17.57960 -17.12518 -16.80052 -16.70470 -16.14223 -15.75936 -15.44847 -14.72893 -14.53792 -13.93076 -13.90628 -13.56362 -13.19209 -13.10741 -12.76486 -12.41220 -12.31299 -12.02685 -11.68760 -11.58451 -11.24142 -11.11860 -11.04193 -10.82859 -10.56328 -10.13078 -9.89608 -9.68667 -9.44705 -9.13342 -8.89631 -8.70608 -8.67724 -6.57348 -6.22016 -4.44744 1.97129 2.42194 3.02322 3.17467 3.27028 3.28938 3.33834 4.06133 4.23980 4.63866 4.72902 5.09349 5.12551 5.16722 5.36084 5.39340 5.48619 5.71916 5.87026 5.89527 5.90559 5.93179 6.07972 6.31853 6.40657 6.48937 6.56823 6.79940 6.98657 7.06614 7.18915 7.35503 7.64884 7.83099 7.87275 7.95588 8.47247 8.54999 8.80529 8.99705 9.33544 10.77230 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.007149 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.575888 B = 3915.553393 C = 6031.265939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.101 4.101 7 C 0.226 3.774 8 H 0.029 0.971 9 C -0.563 4.563 10 H 0.067 0.933 11 C 0.087 3.913 12 N -0.856 5.856 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.272 1.272 17 O -0.286 6.286 18 C 0.092 3.908 19 C -0.121 4.121 20 C -0.199 4.199 21 C 0.332 3.668 22 N -0.869 5.869 23 N -0.513 5.513 24 C 0.083 3.917 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.268 0.732 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.395 0.605 36 H 0.399 0.601 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -6.494 -3.511 7.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.401 6.401 6 C -0.138 4.138 7 C 0.171 3.829 8 H 0.047 0.953 9 C -0.600 4.600 10 H 0.085 0.915 11 C -0.121 4.121 12 N -0.491 5.491 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.197 6.197 18 C 0.040 3.960 19 C -0.147 4.147 20 C -0.224 4.224 21 C 0.097 3.903 22 N -0.416 5.416 23 N -0.231 5.231 24 C -0.074 4.074 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.223 0.777 36 H 0.227 0.773 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.078 -7.100 -2.459 7.591 hybrid contribution 0.533 1.147 -0.953 1.584 sum -0.545 -5.953 -3.412 6.883 Atomic orbital electron populations 1.21777 0.93321 1.02313 1.03315 1.22851 0.94830 0.81806 1.02040 1.86575 1.26180 1.30968 1.84762 1.24901 0.79480 0.94323 0.71224 1.90600 1.60192 1.43606 1.45747 1.21826 0.96655 0.88124 1.07210 1.19735 0.88649 0.92360 0.82117 0.95288 1.21407 1.33050 0.95110 1.10400 0.91489 1.25027 0.93758 0.98934 0.94378 1.69857 1.34202 1.34384 1.10674 0.86545 0.79785 0.83737 0.77737 1.20236 1.20887 1.19644 1.86235 1.28534 1.66400 1.38521 1.19798 0.88316 0.93682 0.94201 1.21591 0.93905 0.99857 0.99388 1.21096 0.98629 1.04323 0.98318 1.18090 0.87730 0.94134 0.90348 1.41885 1.17498 1.62496 1.19747 1.67021 1.05335 1.23236 1.27473 1.21575 0.91917 0.96453 0.97436 0.91735 0.90859 0.91586 0.91930 0.91702 0.84191 0.88018 0.92228 0.84179 0.86279 0.77749 0.77274 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.72 10.22 -39.28 -0.40 -7.12 16 4 C 0.46 9.60 7.84 36.00 0.28 9.88 16 5 O -0.51 -11.90 15.17 -24.05 -0.36 -12.26 16 6 C -0.10 -2.21 5.22 -27.89 -0.15 -2.35 16 7 C 0.23 5.41 1.35 -27.89 -0.04 5.37 16 8 H 0.03 0.69 6.20 -51.93 -0.32 0.36 16 9 C -0.56 -14.11 7.99 -34.44 -0.28 -14.39 16 10 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 11 C 0.09 2.20 5.24 -17.82 -0.09 2.10 16 12 N -0.86 -22.38 10.93 55.43 0.61 -21.77 16 13 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 17 O -0.29 -7.22 8.44 -34.23 -0.29 -7.51 16 18 C 0.09 2.14 6.60 -39.12 -0.26 1.88 16 19 C -0.12 -2.57 8.78 -39.18 -0.34 -2.91 16 20 C -0.20 -3.68 9.93 -39.24 -0.39 -4.07 16 21 C 0.33 6.13 7.75 -154.85 -1.20 4.93 16 22 N -0.87 -11.83 9.09 31.16 0.28 -11.55 16 23 N -0.51 -10.54 10.39 -12.29 -0.13 -10.67 16 24 C 0.08 1.82 11.13 -17.40 -0.19 1.63 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.14 3.34 6.22 -51.93 -0.32 3.02 16 31 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.14 2.96 5.83 -52.48 -0.31 2.65 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.39 4.86 8.95 -40.82 -0.37 4.50 16 36 H 0.40 4.22 8.82 -40.82 -0.36 3.86 16 37 H 0.15 3.12 8.06 -52.49 -0.42 2.69 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -29.97 320.50 -7.13 -37.10 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.60 Total: 12.19 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.04 Total: 1.92 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.76 Total: -43.99 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.06 Total: -26.89 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.97 -7.13 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226777283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.358 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds