Wall clock time and date at job start Tue Mar 31 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45208 * 109.46756 * 2 1 4 4 C 1.34228 * 116.99761 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00198 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99952 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47383 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46960 * 54.99529 * 7 6 4 9 9 C 1.50696 * 109.47337 * 174.99742 * 7 6 4 10 10 H 1.08005 * 120.00048 * 239.99522 * 9 7 6 11 11 C 1.37879 * 119.99855 * 59.99857 * 9 7 6 12 12 N 1.31510 * 120.00150 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99842 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46994 * 90.00268 * 13 11 9 15 15 H 1.48496 * 109.47014 * 209.99944 * 13 11 9 16 16 H 1.48501 * 109.47241 * 330.00213 * 13 11 9 17 17 O 1.42901 * 109.46767 * 294.99738 * 7 6 4 18 18 C 1.35465 * 116.99772 * 149.99619 * 17 7 6 19 19 N 1.32316 * 119.19653 * 359.72925 * 18 17 7 20 20 C 1.32301 * 120.75878 * 179.75630 * 19 18 17 21 21 C 1.38588 * 119.17403 * 0.50761 * 20 19 18 22 22 C 1.50696 * 120.74031 * 179.77048 * 21 20 19 23 23 C 1.38597 * 118.52283 * 359.75187 * 21 20 19 24 24 N 1.32295 * 119.17308 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46399 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46973 * 300.00108 * 1 2 3 27 27 H 1.08997 * 109.46730 * 60.00594 * 1 2 3 28 28 H 1.08990 * 109.47412 * 239.99861 * 2 1 3 29 29 H 1.08997 * 109.46730 * 119.99406 * 2 1 3 30 30 H 1.09003 * 109.47604 * 59.99737 * 6 4 3 31 31 H 1.09006 * 109.47078 * 299.99654 * 6 4 3 32 32 H 0.97001 * 120.00028 * 180.02562 * 12 11 9 33 33 H 1.07997 * 120.41016 * 180.23782 * 20 19 18 34 34 H 1.09001 * 109.47254 * 269.97811 * 22 21 20 35 35 H 1.09002 * 109.47310 * 29.97707 * 22 21 20 36 36 H 1.09000 * 109.47388 * 149.97642 * 22 21 20 37 37 H 1.08001 * 120.41457 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 1 5.7807 2.2495 -0.8414 9 6 6.0243 4.2447 -0.1243 10 1 6.6592 4.4927 -0.9621 11 6 5.7405 5.1971 0.8314 12 7 4.9678 4.8949 1.8518 13 14 6.4546 6.9163 0.6775 14 1 5.5205 7.7729 -0.0964 15 1 6.6497 7.4943 2.0314 16 1 7.7613 6.8486 -0.0248 17 8 5.8944 2.2646 1.2215 18 6 7.0495 1.5584 1.1766 19 7 7.6945 1.4485 0.0265 20 6 8.8277 0.7702 -0.0516 21 6 9.3312 0.1626 1.0877 22 6 10.6163 -0.6230 1.0378 23 6 8.6269 0.2938 2.2741 24 7 7.5027 0.9912 2.2828 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.5843 3.4703 0.8895 31 1 3.5852 3.4691 -0.8906 32 1 4.7679 5.5651 2.5239 33 1 9.3515 0.6873 -0.9924 34 1 10.3963 -1.6650 0.8056 35 1 11.2659 -0.2083 0.2670 36 1 11.1161 -0.5639 2.0046 37 1 8.9912 -0.1674 3.1801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227054431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:43 Heat of formation + Delta-G solvation = -77.757003 kcal Electronic energy + Delta-G solvation = -22106.546000 eV Core-core repulsion = 18656.985378 eV Total energy + Delta-G solvation = -3449.560622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33360 -39.73255 -37.34236 -35.86231 -33.50811 -32.96697 -32.33899 -31.57282 -30.20211 -26.55252 -26.17000 -24.11565 -23.25199 -22.19623 -21.43283 -19.89317 -18.04975 -17.26767 -16.97418 -16.12478 -15.95138 -15.52051 -14.96773 -14.59033 -14.44128 -13.88702 -13.72413 -13.34565 -13.26574 -12.89443 -12.70919 -12.44377 -12.24642 -12.09874 -11.91719 -11.48679 -11.34938 -11.15314 -11.01802 -10.81183 -10.49853 -10.27607 -10.18972 -10.12397 -9.71358 -9.51108 -9.23944 -8.74529 -8.26523 -7.74837 -6.21978 -4.40434 1.79859 1.81287 3.02909 3.19202 3.28219 3.30908 3.34502 3.85554 4.26790 4.61378 4.88354 5.08251 5.10336 5.12512 5.17038 5.27099 5.33659 5.40056 5.49530 5.62218 5.75466 5.91395 5.93451 6.00634 6.05980 6.09498 6.33688 6.42371 6.62234 6.69003 6.99822 7.07937 7.32645 7.62760 7.72184 7.95943 8.40187 8.52688 8.73394 9.11844 9.36851 10.79982 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.007548 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.521377 B = 3708.875012 C = 5926.739306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.516 6.516 6 C -0.103 4.103 7 C 0.229 3.771 8 H 0.055 0.945 9 C -0.546 4.546 10 H 0.070 0.930 11 C 0.080 3.920 12 N -0.858 5.858 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.272 1.272 17 O -0.260 6.260 18 C 0.532 3.468 19 N -0.554 5.554 20 C 0.184 3.816 21 C -0.278 4.278 22 C -0.086 4.086 23 C 0.182 3.818 24 N -0.541 5.541 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.268 0.732 33 H 0.156 0.844 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -8.492 -2.589 8.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.141 4.141 7 C 0.174 3.826 8 H 0.073 0.927 9 C -0.583 4.583 10 H 0.089 0.911 11 C -0.127 4.127 12 N -0.494 5.494 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.197 1.197 17 O -0.158 6.158 18 C 0.233 3.767 19 N -0.283 5.283 20 C 0.016 3.984 21 C -0.284 4.284 22 C -0.144 4.144 23 C 0.014 3.986 24 N -0.268 5.268 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.173 0.827 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.536 -8.044 -2.207 8.358 hybrid contribution 1.211 0.307 -0.114 1.255 sum 0.675 -7.736 -2.321 8.105 Atomic orbital electron populations 1.21776 0.93262 1.02312 1.03340 1.22855 0.94868 0.81806 1.02009 1.86574 1.26088 1.30966 1.84736 1.24901 0.79508 0.94299 0.71143 1.90596 1.60240 1.43683 1.45866 1.21900 0.96614 0.88193 1.07352 1.19876 0.87992 0.92854 0.81837 0.92731 1.21375 1.32393 0.94238 1.10331 0.91138 1.25143 0.93913 0.99206 0.94472 1.69861 1.34278 1.34464 1.10749 0.86494 0.79810 0.83538 0.77658 1.20095 1.20924 1.19665 1.86350 1.30525 1.58996 1.39931 1.20947 0.87129 0.84994 0.83600 1.68210 1.10240 1.21466 1.28415 1.22759 0.89918 0.88239 0.97490 1.21228 1.02199 1.08338 0.96651 1.20388 0.93195 0.98595 1.02214 1.22766 0.88068 0.90734 0.96990 1.67645 1.15488 1.13782 1.29844 0.90856 0.91572 0.91696 0.91917 0.91773 0.84230 0.87605 0.92171 0.82663 0.92011 0.91944 0.91985 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.29 37.16 0.38 -1.31 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -7.00 10.22 -39.25 -0.40 -7.40 16 4 C 0.46 10.15 7.84 36.00 0.28 10.43 16 5 O -0.52 -12.63 15.17 -24.06 -0.36 -13.00 16 6 C -0.10 -2.39 5.22 -27.88 -0.15 -2.54 16 7 C 0.23 5.92 1.58 -27.88 -0.04 5.88 16 8 H 0.05 1.43 6.76 -51.93 -0.35 1.08 16 9 C -0.55 -14.68 8.90 -34.44 -0.31 -14.98 16 10 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 11 C 0.08 2.12 5.24 -17.82 -0.09 2.03 16 12 N -0.86 -23.49 10.93 55.43 0.61 -22.88 16 13 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 O -0.26 -7.19 8.46 -32.53 -0.28 -7.47 16 18 C 0.53 13.55 8.45 -91.25 -0.77 12.77 16 19 N -0.55 -12.80 8.66 -14.73 -0.13 -12.93 16 20 C 0.18 3.31 11.00 -17.22 -0.19 3.12 16 21 C -0.28 -4.41 5.91 -104.36 -0.62 -5.03 16 22 C -0.09 -0.92 10.06 36.00 0.36 -0.56 16 23 C 0.18 3.24 11.00 -17.22 -0.19 3.05 16 24 N -0.54 -12.60 10.46 -14.73 -0.15 -12.76 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.14 3.50 6.22 -51.93 -0.32 3.18 16 31 H 0.11 2.21 8.14 -51.93 -0.42 1.78 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -32.81 324.85 -6.81 -39.61 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.86 Total: 2.35 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -1.10 Total: 14.01 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.32 Total: -48.57 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.04 Total: -27.87 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.81 -6.81 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227054431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.143 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds