Wall clock time and date at job start Tue Mar 31 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45208 * 109.46756 * 2 1 4 4 C 1.34228 * 116.99761 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00198 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99952 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47383 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46960 * 54.99529 * 7 6 4 9 9 C 1.50696 * 109.47337 * 174.99742 * 7 6 4 10 10 H 1.08005 * 120.00048 * 239.99522 * 9 7 6 11 11 C 1.37879 * 119.99855 * 59.99857 * 9 7 6 12 12 N 1.31510 * 120.00150 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99842 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46994 * 90.00268 * 13 11 9 15 15 H 1.48496 * 109.47014 * 209.99944 * 13 11 9 16 16 H 1.48501 * 109.47241 * 330.00213 * 13 11 9 17 17 O 1.42901 * 109.46767 * 294.99738 * 7 6 4 18 18 C 1.35465 * 116.99772 * 149.99619 * 17 7 6 19 19 N 1.32316 * 119.19653 * 359.72925 * 18 17 7 20 20 C 1.32301 * 120.75878 * 179.75630 * 19 18 17 21 21 C 1.38588 * 119.17403 * 0.50761 * 20 19 18 22 22 C 1.50696 * 120.74031 * 179.77048 * 21 20 19 23 23 C 1.38597 * 118.52283 * 359.75187 * 21 20 19 24 24 N 1.32295 * 119.17308 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46399 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46973 * 300.00108 * 1 2 3 27 27 H 1.08997 * 109.46730 * 60.00594 * 1 2 3 28 28 H 1.08990 * 109.47412 * 239.99861 * 2 1 3 29 29 H 1.08997 * 109.46730 * 119.99406 * 2 1 3 30 30 H 1.09003 * 109.47604 * 59.99737 * 6 4 3 31 31 H 1.09006 * 109.47078 * 299.99654 * 6 4 3 32 32 H 0.97001 * 120.00028 * 180.02562 * 12 11 9 33 33 H 1.07997 * 120.41016 * 180.23782 * 20 19 18 34 34 H 1.09001 * 109.47254 * 269.97811 * 22 21 20 35 35 H 1.09002 * 109.47310 * 29.97707 * 22 21 20 36 36 H 1.09000 * 109.47388 * 149.97642 * 22 21 20 37 37 H 1.08001 * 120.41457 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 1 5.7807 2.2495 -0.8414 9 6 6.0243 4.2447 -0.1243 10 1 6.6592 4.4927 -0.9621 11 6 5.7405 5.1971 0.8314 12 7 4.9678 4.8949 1.8518 13 14 6.4546 6.9163 0.6775 14 1 5.5205 7.7729 -0.0964 15 1 6.6497 7.4943 2.0314 16 1 7.7613 6.8486 -0.0248 17 8 5.8944 2.2646 1.2215 18 6 7.0495 1.5584 1.1766 19 7 7.6945 1.4485 0.0265 20 6 8.8277 0.7702 -0.0516 21 6 9.3312 0.1626 1.0877 22 6 10.6163 -0.6230 1.0378 23 6 8.6269 0.2938 2.2741 24 7 7.5027 0.9912 2.2828 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.5843 3.4703 0.8895 31 1 3.5852 3.4691 -0.8906 32 1 4.7679 5.5651 2.5239 33 1 9.3515 0.6873 -0.9924 34 1 10.3963 -1.6650 0.8056 35 1 11.2659 -0.2083 0.2670 36 1 11.1161 -0.5639 2.0046 37 1 8.9912 -0.1674 3.1801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227054431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:43 Heat of formation + Delta-G solvation = -100.641975 kcal Electronic energy + Delta-G solvation = -22107.538367 eV Core-core repulsion = 18656.985378 eV Total energy + Delta-G solvation = -3450.552989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92792 -41.41086 -39.10625 -37.52502 -35.33399 -34.56515 -33.82323 -32.89435 -31.91583 -28.25012 -27.66075 -25.65336 -24.71570 -23.63473 -23.01469 -21.62924 -19.83850 -18.97345 -18.61959 -17.83859 -17.59412 -17.28214 -16.65641 -16.30594 -16.03006 -15.22429 -15.14804 -14.85100 -14.78857 -14.25545 -13.98389 -13.92590 -13.69894 -13.40648 -13.03946 -13.01277 -12.97071 -12.82422 -12.63324 -12.49700 -12.29746 -11.84251 -11.76315 -11.56729 -11.51965 -11.40881 -11.06353 -10.73080 -9.87724 -9.32792 -8.21495 -6.47749 0.28952 0.34187 1.26035 1.39126 1.41013 1.51254 1.78456 2.17559 2.36187 3.02909 3.09627 3.43388 3.83311 3.90421 3.96620 3.98980 4.10438 4.15762 4.23470 4.31284 4.47773 4.66094 4.81761 4.85834 4.90610 4.91756 4.96818 5.11336 5.18382 5.24727 5.33928 5.48307 5.59328 5.67839 5.97195 6.08306 6.52486 6.79893 6.87095 7.28861 7.48548 8.79965 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.007548 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.521377 B = 3708.875012 C = 5926.739306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.543 6.543 6 C -0.098 4.098 7 C 0.234 3.766 8 H 0.038 0.962 9 C -0.563 4.563 10 H 0.061 0.939 11 C 0.040 3.960 12 N -0.883 5.883 13 Si 0.960 3.040 14 H -0.259 1.259 15 H -0.284 1.284 16 H -0.275 1.275 17 O -0.293 6.293 18 C 0.494 3.506 19 N -0.583 5.583 20 C 0.164 3.836 21 C -0.248 4.248 22 C -0.082 4.082 23 C 0.167 3.833 24 N -0.576 5.576 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.269 0.731 33 H 0.194 0.806 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -9.471 -2.888 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.309 3.691 5 O -0.433 6.433 6 C -0.136 4.136 7 C 0.179 3.821 8 H 0.056 0.944 9 C -0.600 4.600 10 H 0.079 0.921 11 C -0.165 4.165 12 N -0.519 5.519 13 Si 0.785 3.215 14 H -0.183 1.183 15 H -0.209 1.209 16 H -0.200 1.200 17 O -0.193 6.193 18 C 0.194 3.806 19 N -0.313 5.313 20 C -0.002 4.002 21 C -0.253 4.253 22 C -0.140 4.140 23 C 0.002 3.998 24 N -0.304 5.304 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.211 0.789 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.659 -9.054 -2.518 9.421 hybrid contribution 0.968 0.397 -0.018 1.046 sum 1.627 -8.657 -2.536 9.166 Atomic orbital electron populations 1.21808 0.89640 1.04508 1.03787 1.23292 0.97639 0.79671 1.01933 1.86547 1.24042 1.33562 1.83992 1.24560 0.80425 0.93465 0.70604 1.90576 1.61165 1.44308 1.47231 1.21729 0.95565 0.89072 1.07229 1.19740 0.89120 0.91989 0.81213 0.94392 1.21506 1.32788 0.95287 1.10458 0.92050 1.25819 0.94130 1.02571 0.93979 1.69988 1.35170 1.35467 1.11265 0.85536 0.79077 0.79370 0.77541 1.18346 1.20927 1.20010 1.86234 1.32296 1.60468 1.40261 1.21106 0.87557 0.86918 0.85047 1.68143 1.12172 1.23043 1.27956 1.23566 0.88844 0.87715 1.00070 1.21805 1.02976 1.05734 0.94804 1.20536 0.90477 0.98670 1.04314 1.23617 0.86749 0.89896 0.99572 1.67594 1.17924 1.15123 1.29787 0.87722 0.91500 0.90861 0.91461 0.92519 0.86030 0.85866 0.92140 0.78891 0.90015 0.90025 0.89817 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 10.29 71.98 0.74 -2.16 16 2 C 0.05 1.46 6.19 71.98 0.45 1.91 16 3 O -0.36 -14.11 10.22 -51.40 -0.53 -14.64 16 4 C 0.46 21.37 7.84 71.23 0.56 21.93 16 5 O -0.54 -27.67 15.17 27.02 0.41 -27.26 16 6 C -0.10 -4.78 5.22 29.85 0.16 -4.62 16 7 C 0.23 12.71 1.58 29.85 0.05 12.76 16 8 H 0.04 2.11 6.76 -2.39 -0.02 2.10 16 9 C -0.56 -31.40 8.90 25.60 0.23 -31.18 16 10 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 11 C 0.04 2.16 5.24 84.66 0.44 2.60 16 12 N -0.88 -49.83 10.93 21.45 0.23 -49.60 16 13 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 14 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 O -0.29 -17.05 8.46 -73.82 -0.62 -17.68 16 18 C 0.49 26.12 8.45 180.57 1.53 27.64 16 19 N -0.58 -27.64 8.66 -313.47 -2.71 -30.35 16 20 C 0.16 5.71 11.00 84.71 0.93 6.64 16 21 C -0.25 -7.23 5.91 -19.70 -0.12 -7.35 16 22 C -0.08 -1.38 10.06 71.23 0.72 -0.66 16 23 C 0.17 5.70 11.00 84.71 0.93 6.63 16 24 N -0.58 -27.42 10.46 -313.46 -3.28 -30.70 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 29 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.12 6.40 6.22 -2.39 -0.01 6.39 16 31 H 0.12 5.34 8.14 -2.38 -0.02 5.32 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.19 4.96 8.06 -2.91 -0.02 4.94 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.13 8.10 -2.39 -0.02 1.12 16 36 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.20 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -76.04 324.85 3.21 -72.83 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.07 Total: 18.39 kcal Atomic # 6 Polarization: 27.54 SS G_CDS: 6.61 Total: 34.15 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -5.76 Total: -110.65 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -0.74 Total: -59.57 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.04 3.21 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227054431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.816 kcal (2) G-P(sol) polarization free energy of solvation -76.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds