Wall clock time and date at job start Tue Mar 31 2020 02:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.47035 * 2 1 4 4 C 1.46893 * 110.99901 * 302.29920 * 3 2 1 5 5 C 1.50697 * 109.47381 * 295.55910 * 4 3 2 6 6 H 1.08001 * 120.00136 * 354.93457 * 5 4 3 7 7 C 1.37877 * 119.99779 * 174.94158 * 5 4 3 8 8 N 1.31518 * 119.99652 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00506 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47347 * 89.99767 * 9 7 5 11 11 H 1.48498 * 109.47552 * 210.00220 * 9 7 5 12 12 H 1.48498 * 109.46813 * 330.00138 * 9 7 5 13 13 C 1.46897 * 110.99798 * 66.25574 * 3 2 1 14 14 C 1.50707 * 109.47065 * 66.04433 * 13 3 2 15 15 C 1.38529 * 119.87039 * 89.99900 * 14 13 3 16 16 F 1.35097 * 119.94135 * 0.04463 * 15 14 13 17 17 C 1.38191 * 120.12427 * 180.02562 * 15 14 13 18 18 C 1.39607 * 119.87232 * 0.02562 * 17 15 14 19 19 C 1.43205 * 120.12553 * 179.97438 * 18 17 15 20 20 N 7.39356 * 118.50136 * 97.60523 * 2 1 3 21 21 C 1.39604 * 119.74534 * 0.27618 * 18 17 15 22 22 C 1.38190 * 119.87141 * 359.44080 * 21 18 17 23 23 F 1.35096 * 119.93599 * 180.27595 * 22 21 18 24 24 H 1.09001 * 109.47071 * 185.20888 * 1 2 3 25 25 H 1.09000 * 109.46813 * 305.20804 * 1 2 3 26 26 H 1.09005 * 109.47159 * 65.21027 * 1 2 3 27 27 H 1.09007 * 109.46876 * 240.00233 * 2 1 3 28 28 H 1.08993 * 109.47053 * 120.00425 * 2 1 3 29 29 H 1.08999 * 109.47494 * 55.56359 * 4 3 2 30 30 H 1.09009 * 109.46753 * 175.55909 * 4 3 2 31 31 H 0.97006 * 119.99734 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46986 * 306.04360 * 13 3 2 33 33 H 1.08999 * 109.47221 * 186.04214 * 13 3 2 34 34 H 1.07999 * 120.06267 * 179.97438 * 17 15 14 35 35 H 1.08001 * 120.06383 * 179.71846 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5043 2.1256 -1.1592 5 6 2.0481 1.5173 -2.4262 6 1 2.7735 0.7190 -2.3739 7 6 1.6195 1.9801 -3.6522 8 7 2.0944 1.4496 -4.7579 9 14 0.3643 3.3605 -3.7428 10 1 1.0677 4.6680 -3.7736 11 1 -0.4512 3.2081 -4.9745 12 1 -0.5216 3.3030 -2.5524 13 6 1.6745 2.0654 1.2553 14 6 2.4191 1.4218 2.3967 15 6 3.6718 1.8918 2.7555 16 9 4.2223 2.9258 2.0825 17 6 4.3594 1.3052 3.8009 18 6 3.7894 0.2367 4.4954 19 6 4.4974 -0.3755 5.5792 20 7 5.0581 -0.8599 6.4403 21 6 2.5294 -0.2367 4.1252 22 6 1.8486 0.3615 3.0820 23 9 0.6268 -0.0920 2.7262 24 1 -0.3633 -1.0234 0.0933 25 1 -0.3633 0.5925 0.8397 26 1 -0.3634 0.4309 -0.9330 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.4156 2.0731 -1.1691 30 1 1.8172 3.1677 -1.0930 31 1 1.7926 1.7749 -5.6205 32 1 0.6017 1.9840 1.4296 33 1 1.9528 3.1170 1.1871 34 1 5.3362 1.6722 4.0795 35 1 2.0856 -1.0660 4.6560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235657240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:48 Heat of formation + Delta-G solvation = -21.434023 kcal Electronic energy + Delta-G solvation = -21638.134124 eV Core-core repulsion = 18079.928334 eV Total energy + Delta-G solvation = -3558.205790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.21025 -49.01663 -39.57001 -37.61278 -36.51989 -32.87867 -32.04133 -30.74430 -29.66548 -28.08834 -25.64975 -23.52138 -23.12400 -22.19296 -19.75916 -19.38055 -17.75093 -16.88237 -16.66456 -16.39791 -15.94578 -15.89915 -15.40338 -14.98262 -14.64626 -14.49549 -14.15008 -14.05152 -13.73533 -13.49112 -12.97193 -12.63766 -12.57200 -12.38904 -12.31362 -11.90064 -11.64017 -11.59025 -11.38724 -11.05923 -10.59694 -10.54781 -10.04348 -9.93899 -9.33120 -9.09973 -9.05202 -8.59262 -7.45223 -6.07394 -4.04986 0.19646 0.67742 2.25158 2.42218 3.19774 3.26176 3.31907 3.33827 3.34473 3.85284 4.17138 4.37439 4.39091 4.42691 4.53421 4.84914 5.04571 5.24683 5.33527 5.50990 5.60189 5.67281 5.71157 5.77365 5.82063 5.97584 6.08494 6.34279 6.39486 6.52199 6.78412 6.92056 7.01685 7.06856 7.52956 7.77548 7.94225 8.60906 9.01344 9.53765 11.05624 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.004621 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.223159 B = 6058.455410 C = 6470.477455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 N -0.516 5.516 4 C 0.157 3.843 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.076 3.924 14 C -0.105 4.105 15 C 0.152 3.848 16 F -0.113 7.113 17 C -0.119 4.119 18 C 0.020 3.980 19 C 0.260 3.740 20 N -0.406 5.406 21 C -0.120 4.120 22 C 0.135 3.865 23 F -0.117 7.117 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.001 0.999 30 H 0.024 0.976 31 H 0.264 0.736 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -0.323 17.694 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.070 4.070 3 N -0.240 5.240 4 C 0.032 3.968 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.052 4.052 14 C -0.108 4.108 15 C 0.132 3.868 16 F -0.091 7.091 17 C -0.140 4.140 18 C 0.017 3.983 19 C -0.056 4.056 20 N -0.081 5.081 21 C -0.141 4.141 22 C 0.115 3.885 23 F -0.095 7.095 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.018 0.982 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.334 -1.041 18.723 18.755 hybrid contribution -1.867 1.032 -0.728 2.254 sum -1.533 -0.009 17.996 18.061 Atomic orbital electron populations 1.22392 0.98874 1.01219 1.02012 1.22055 0.92598 0.90538 1.01806 1.62331 1.59201 1.02224 1.00213 1.20284 0.93815 0.93924 0.88800 1.20962 1.25223 1.20506 0.87787 0.90108 1.24878 0.96227 0.96442 0.95654 1.69890 1.43974 1.42420 0.97545 0.86917 0.82219 0.83222 0.77745 1.20129 1.21235 1.19192 1.21064 0.96891 0.98685 0.88536 1.20296 0.95072 0.96720 0.98690 1.16789 0.90934 0.87427 0.91647 1.91600 1.84549 1.54478 1.78511 1.21113 1.01414 0.96157 0.95351 1.15181 0.93270 0.96591 0.93292 1.25313 0.93600 0.93708 0.92943 1.81285 1.08224 1.08231 1.10312 1.21053 0.93998 1.01533 0.97521 1.16873 0.82246 0.94296 0.95130 1.91581 1.39556 1.87594 1.90794 0.93115 0.93259 0.91561 0.89304 0.93112 0.98175 0.95812 0.92651 0.92930 0.89243 0.83055 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 8.29 37.16 0.31 -2.83 16 2 C 0.06 1.05 5.26 -3.82 -0.02 1.03 16 3 N -0.52 -10.02 4.71 -237.51 -1.12 -11.13 16 4 C 0.16 3.59 3.49 -4.98 -0.02 3.58 16 5 C -0.51 -13.79 8.98 -34.44 -0.31 -14.10 16 6 H 0.08 2.42 7.43 -52.49 -0.39 2.03 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 9 Si 0.87 20.82 27.57 -169.99 -4.69 16.13 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.09 6.40 56.52 0.36 -5.73 16 13 C 0.08 1.18 4.63 -4.97 -0.02 1.16 16 14 C -0.10 -1.33 4.92 -104.40 -0.51 -1.85 16 15 C 0.15 1.79 7.23 -39.49 -0.29 1.50 16 16 F -0.11 -1.53 16.46 2.25 0.04 -1.50 16 17 C -0.12 -1.08 9.73 -39.09 -0.38 -1.46 16 18 C 0.02 0.18 5.73 -106.95 -0.61 -0.43 16 19 C 0.26 2.53 15.33 -22.47 -0.34 2.19 16 20 N -0.41 -4.81 18.54 41.84 0.78 -4.03 16 21 C -0.12 -1.05 9.73 -39.09 -0.38 -1.43 16 22 C 0.13 1.50 5.87 -39.49 -0.23 1.27 16 23 F -0.12 -1.42 13.03 2.25 0.03 -1.39 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.76 4.95 -51.93 -0.26 0.51 16 26 H 0.07 1.27 6.57 -51.93 -0.34 0.93 16 27 H 0.09 1.84 6.92 -51.93 -0.36 1.48 16 28 H 0.05 0.81 5.36 -51.93 -0.28 0.53 16 29 H 0.00 0.01 4.83 -51.93 -0.25 -0.24 16 30 H 0.02 0.55 7.64 -51.92 -0.40 0.15 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 0.79 5.68 -51.93 -0.29 0.49 16 33 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -29.91 298.94 -5.99 -35.90 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -3.40 Total: -2.79 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.91 Total: -9.52 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.43 Total: -41.34 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.07 Total: -2.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.69 Total: 16.13 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.91 -5.99 -35.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235657240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.466 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds