Wall clock time and date at job start Tue Mar 31 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.47035 * 2 1 4 4 C 1.46893 * 110.99901 * 302.29920 * 3 2 1 5 5 C 1.50697 * 109.47381 * 295.55910 * 4 3 2 6 6 H 1.08001 * 120.00136 * 354.93457 * 5 4 3 7 7 C 1.37877 * 119.99779 * 174.94158 * 5 4 3 8 8 N 1.31518 * 119.99652 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00506 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47347 * 89.99767 * 9 7 5 11 11 H 1.48498 * 109.47552 * 210.00220 * 9 7 5 12 12 H 1.48498 * 109.46813 * 330.00138 * 9 7 5 13 13 C 1.46897 * 110.99798 * 66.25574 * 3 2 1 14 14 C 1.50707 * 109.47065 * 66.04433 * 13 3 2 15 15 C 1.38529 * 119.87039 * 89.99900 * 14 13 3 16 16 F 1.35097 * 119.94135 * 0.04463 * 15 14 13 17 17 C 1.38191 * 120.12427 * 180.02562 * 15 14 13 18 18 C 1.39607 * 119.87232 * 0.02562 * 17 15 14 19 19 C 1.43205 * 120.12553 * 179.97438 * 18 17 15 20 20 N 7.39356 * 118.50136 * 97.60523 * 2 1 3 21 21 C 1.39604 * 119.74534 * 0.27618 * 18 17 15 22 22 C 1.38190 * 119.87141 * 359.44080 * 21 18 17 23 23 F 1.35096 * 119.93599 * 180.27595 * 22 21 18 24 24 H 1.09001 * 109.47071 * 185.20888 * 1 2 3 25 25 H 1.09000 * 109.46813 * 305.20804 * 1 2 3 26 26 H 1.09005 * 109.47159 * 65.21027 * 1 2 3 27 27 H 1.09007 * 109.46876 * 240.00233 * 2 1 3 28 28 H 1.08993 * 109.47053 * 120.00425 * 2 1 3 29 29 H 1.08999 * 109.47494 * 55.56359 * 4 3 2 30 30 H 1.09009 * 109.46753 * 175.55909 * 4 3 2 31 31 H 0.97006 * 119.99734 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46986 * 306.04360 * 13 3 2 33 33 H 1.08999 * 109.47221 * 186.04214 * 13 3 2 34 34 H 1.07999 * 120.06267 * 179.97438 * 17 15 14 35 35 H 1.08001 * 120.06383 * 179.71846 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5043 2.1256 -1.1592 5 6 2.0481 1.5173 -2.4262 6 1 2.7735 0.7190 -2.3739 7 6 1.6195 1.9801 -3.6522 8 7 2.0944 1.4496 -4.7579 9 14 0.3643 3.3605 -3.7428 10 1 1.0677 4.6680 -3.7736 11 1 -0.4512 3.2081 -4.9745 12 1 -0.5216 3.3030 -2.5524 13 6 1.6745 2.0654 1.2553 14 6 2.4191 1.4218 2.3967 15 6 3.6718 1.8918 2.7555 16 9 4.2223 2.9258 2.0825 17 6 4.3594 1.3052 3.8009 18 6 3.7894 0.2367 4.4954 19 6 4.4974 -0.3755 5.5792 20 7 5.0581 -0.8599 6.4403 21 6 2.5294 -0.2367 4.1252 22 6 1.8486 0.3615 3.0820 23 9 0.6268 -0.0920 2.7262 24 1 -0.3633 -1.0234 0.0933 25 1 -0.3633 0.5925 0.8397 26 1 -0.3634 0.4309 -0.9330 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.4156 2.0731 -1.1691 30 1 1.8172 3.1677 -1.0930 31 1 1.7926 1.7749 -5.6205 32 1 0.6017 1.9840 1.4296 33 1 1.9528 3.1170 1.1871 34 1 5.3362 1.6722 4.0795 35 1 2.0856 -1.0660 4.6560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235657240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:47 Heat of formation + Delta-G solvation = -39.927595 kcal Electronic energy + Delta-G solvation = -21638.936066 eV Core-core repulsion = 18079.928334 eV Total energy + Delta-G solvation = -3559.007732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.09692 -49.97324 -40.47187 -38.95998 -37.45572 -34.75979 -33.29430 -31.55098 -31.22924 -29.61415 -27.00316 -24.91251 -24.00333 -23.63553 -20.93442 -20.61433 -18.90716 -18.64190 -17.50125 -17.48226 -17.00024 -16.78974 -16.44694 -16.37552 -16.15775 -15.85956 -15.44107 -14.98862 -14.64350 -14.53793 -14.39771 -14.36538 -13.75701 -13.49086 -13.31295 -13.23506 -12.97889 -12.73094 -12.66772 -12.56560 -12.31885 -12.13448 -11.83765 -11.53248 -11.38325 -10.74155 -10.03043 -9.86477 -8.97585 -8.24147 -6.26705 -0.64013 -0.11835 1.37651 1.38306 1.46286 1.48087 1.58099 2.36923 2.37089 2.52686 2.99739 3.09942 3.26949 3.34379 3.51917 3.60609 3.82494 4.19967 4.25765 4.31201 4.46330 4.56635 4.68487 4.70644 4.76620 4.83473 4.85297 4.95526 5.01400 5.10999 5.30263 5.45504 5.54553 5.58625 5.98281 6.29431 6.34806 6.64173 6.79626 7.36435 8.92454 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.004621 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.223159 B = 6058.455410 C = 6470.477455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 N -0.533 5.533 4 C 0.168 3.832 5 C -0.507 4.507 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.247 1.247 13 C 0.078 3.922 14 C -0.120 4.120 15 C 0.137 3.863 16 F -0.129 7.129 17 C -0.100 4.100 18 C 0.031 3.969 19 C 0.285 3.715 20 N -0.438 5.438 21 C -0.097 4.097 22 C 0.128 3.872 23 F -0.123 7.123 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.005 0.995 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.175 0.825 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 0.115 20.195 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.066 4.066 3 N -0.257 5.257 4 C 0.041 3.959 5 C -0.546 4.546 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.170 1.170 13 C -0.049 4.049 14 C -0.123 4.123 15 C 0.117 3.883 16 F -0.107 7.107 17 C -0.121 4.121 18 C 0.027 3.973 19 C -0.030 4.030 20 N -0.114 5.114 21 C -0.118 4.118 22 C 0.108 3.892 23 F -0.101 7.101 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.022 0.978 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.192 0.808 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.588 -0.607 21.260 21.277 hybrid contribution -1.479 0.801 -1.421 2.202 sum -2.067 0.194 19.839 19.947 Atomic orbital electron populations 1.22295 0.97613 1.02543 1.01144 1.21965 0.93595 0.89874 1.01122 1.62151 1.59822 1.02708 1.00985 1.20014 0.93653 0.93857 0.88388 1.21185 1.24020 1.19229 0.90144 0.94514 1.25791 0.98575 0.99327 0.95120 1.70054 1.46101 1.44601 0.98301 0.85800 0.79644 0.79671 0.78373 1.19187 1.21109 1.17031 1.21023 0.97855 0.98612 0.87440 1.20129 0.95684 0.97917 0.98561 1.16921 0.91014 0.87726 0.92615 1.91563 1.84765 1.55295 1.79066 1.21268 1.01852 0.95227 0.93743 1.15094 0.93148 0.96237 0.92773 1.25173 0.92731 0.92783 0.92311 1.81336 1.09272 1.09346 1.11407 1.21255 0.93316 1.01194 0.96070 1.16890 0.82260 0.94225 0.95823 1.91563 1.39955 1.87626 1.90971 0.91231 0.91518 0.94352 0.93091 0.90605 0.97780 0.95600 0.92590 0.92153 0.89328 0.80782 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 8.29 71.98 0.60 -5.18 16 2 C 0.06 2.25 5.26 86.30 0.45 2.70 16 3 N -0.53 -20.63 4.71 -905.36 -4.26 -24.89 16 4 C 0.17 7.66 3.49 85.56 0.30 7.96 16 5 C -0.51 -28.60 8.98 25.60 0.23 -28.37 16 6 H 0.04 2.33 7.43 -2.91 -0.02 2.31 16 7 C 0.01 0.51 5.47 84.65 0.46 0.97 16 8 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 9 Si 0.94 43.10 27.57 68.60 1.89 44.99 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.25 -10.39 6.40 99.48 0.64 -9.75 16 13 C 0.08 2.32 4.63 85.56 0.40 2.71 16 14 C -0.12 -2.83 4.92 -19.72 -0.10 -2.92 16 15 C 0.14 2.96 7.23 22.33 0.16 3.12 16 16 F -0.13 -3.36 16.46 44.97 0.74 -2.62 16 17 C -0.10 -1.51 9.73 22.59 0.22 -1.29 16 18 C 0.03 0.44 5.73 -21.37 -0.12 0.31 16 19 C 0.29 4.63 15.33 88.33 1.35 5.99 16 20 N -0.44 -9.31 18.54 19.01 0.35 -8.96 16 21 C -0.10 -1.33 9.73 22.59 0.22 -1.11 16 22 C 0.13 2.48 5.87 22.33 0.13 2.61 16 23 F -0.12 -2.61 13.03 44.97 0.59 -2.03 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 1.93 4.95 -2.39 -0.01 1.91 16 26 H 0.04 1.45 6.57 -2.38 -0.02 1.43 16 27 H 0.05 2.20 6.92 -2.38 -0.02 2.19 16 28 H 0.08 2.33 5.36 -2.39 -0.01 2.31 16 29 H 0.00 0.21 4.83 -2.39 -0.01 0.19 16 30 H 0.03 1.18 7.64 -2.38 -0.02 1.16 16 31 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 32 H 0.06 1.69 5.68 -2.39 -0.01 1.67 16 33 H 0.09 2.61 7.44 -2.39 -0.02 2.59 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -66.98 298.94 4.99 -61.99 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.07 Total: 2.58 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.31 Total: -12.48 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -3.61 Total: -92.43 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.33 Total: -4.65 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.89 Total: 44.99 kcal Total: -66.98 4.99 -61.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235657240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.062 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds