Wall clock time and date at job start Tue Mar 31 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46895 * 109.47455 * 2 1 4 4 C 1.46895 * 111.00049 * 287.95330 * 3 2 1 5 5 C 1.50702 * 109.47550 * 160.35889 * 4 3 2 6 6 H 1.07999 * 119.99691 * 4.66860 * 5 4 3 7 7 C 1.37878 * 120.00313 * 184.67190 * 5 4 3 8 8 N 1.31517 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99966 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47419 * 60.00009 * 9 7 5 11 11 H 1.48507 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47076 * 299.99946 * 9 7 5 13 13 C 1.46899 * 111.00352 * 163.99766 * 3 2 1 14 14 C 1.50704 * 109.47257 * 293.95495 * 13 3 2 15 15 C 1.37812 * 119.90599 * 104.99676 * 14 13 3 16 16 C 1.39699 * 119.89945 * 180.02562 * 15 14 13 17 17 C 1.43200 * 120.14503 * 180.02562 * 16 15 14 18 18 N 6.17311 * 126.52548 * 126.68322 * 2 1 3 19 19 C 1.39965 * 119.71287 * 359.97438 * 16 15 14 20 20 F 1.35100 * 120.10277 * 179.97438 * 19 16 15 21 21 C 1.38142 * 119.80341 * 0.02562 * 19 16 15 22 22 C 1.38543 * 120.10267 * 0.26955 * 21 19 16 23 23 F 1.35100 * 119.85736 * 179.70391 * 22 21 19 24 24 H 1.09002 * 109.47361 * 299.29486 * 1 2 3 25 25 H 1.08998 * 109.47316 * 59.29614 * 1 2 3 26 26 H 1.09005 * 109.47641 * 179.29282 * 1 2 3 27 27 H 1.09000 * 109.47391 * 239.99634 * 2 1 3 28 28 H 1.09007 * 109.47225 * 120.00332 * 2 1 3 29 29 H 1.09008 * 109.47119 * 280.35719 * 4 3 2 30 30 H 1.09000 * 109.47296 * 40.35749 * 4 3 2 31 31 H 0.96996 * 119.99794 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47451 * 173.95347 * 13 3 2 33 33 H 1.08996 * 109.47345 * 53.95482 * 13 3 2 34 34 H 1.08002 * 120.04798 * 0.02562 * 15 14 13 35 35 H 1.08001 * 119.94741 * 180.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7966 2.0222 -1.3046 5 6 1.8478 3.5201 -1.1474 6 1 2.1025 3.9543 -0.1919 7 6 1.5696 4.3361 -2.2234 8 7 1.2600 3.8073 -3.3871 9 14 1.6324 6.1928 -2.0283 10 1 2.9983 6.6010 -1.6123 11 1 1.2950 6.8382 -3.3225 12 1 0.6533 6.6154 -0.9949 13 6 3.4380 1.4418 0.3781 14 6 3.5934 1.0066 1.8125 15 6 4.1057 -0.2399 2.1007 16 6 4.2492 -0.6434 3.4304 17 6 4.7814 -1.9372 3.7359 18 7 5.2040 -2.9635 3.9782 19 6 3.8716 0.2229 4.4629 20 9 4.0065 -0.1594 5.7516 21 6 3.3594 1.4697 4.1602 22 6 3.2148 1.8594 2.8386 23 9 2.7078 3.0775 2.5482 24 1 -0.3634 0.5028 0.8962 25 1 -0.3634 0.5247 -0.8836 26 1 -0.3634 -1.0276 -0.0127 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.5714 1.7033 -2.0019 30 1 0.8193 1.7304 -1.6892 31 1 1.0646 4.3814 -4.1440 32 1 3.8031 2.4628 0.2665 33 1 4.0130 0.7779 -0.2674 34 1 4.3958 -0.9038 1.2997 35 1 3.0677 2.1401 4.9551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237526686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:50 Heat of formation + Delta-G solvation = -33.285162 kcal Electronic energy + Delta-G solvation = -21344.624926 eV Core-core repulsion = 17785.905232 eV Total energy + Delta-G solvation = -3558.719694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.34593 -48.84404 -39.53254 -37.12909 -36.37880 -32.74530 -31.95902 -31.39817 -29.82324 -27.03124 -24.90717 -24.18482 -22.65773 -22.40055 -20.07789 -18.73025 -18.18741 -17.49195 -16.49515 -16.23004 -15.69208 -15.38725 -14.88814 -14.83221 -14.59046 -14.40984 -14.05007 -13.88650 -13.64691 -13.58152 -13.33076 -12.88871 -12.39430 -12.16801 -11.92426 -11.72679 -11.64264 -11.32599 -11.09542 -11.00149 -10.83654 -10.64320 -10.32853 -9.75823 -9.37420 -9.22774 -8.74150 -8.43544 -7.40027 -6.04586 -4.05712 0.30817 0.75313 2.38911 2.56457 3.32863 3.37348 3.37735 3.40621 3.48102 3.61556 4.14549 4.34271 4.41034 4.59834 4.82391 4.94599 5.31734 5.32740 5.46143 5.55391 5.58953 5.69330 5.69638 5.85028 6.02035 6.14589 6.21205 6.30245 6.48983 6.50973 6.76169 7.12959 7.21840 7.24951 7.78031 8.02780 8.09792 8.46773 9.02063 9.58753 11.05930 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.004680 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.828244 B = 5981.658006 C = 6626.698944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.529 5.529 4 C 0.192 3.808 5 C -0.506 4.506 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.097 3.903 14 C -0.112 4.112 15 C -0.014 4.014 16 C -0.082 4.082 17 C 0.260 3.740 18 N -0.410 5.410 19 C 0.169 3.831 20 F -0.124 7.124 21 C -0.199 4.199 22 C 0.193 3.807 23 F -0.102 7.102 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.024 0.976 28 H 0.057 0.943 29 H -0.009 1.009 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.150 0.850 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 -6.031 12.001 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.254 5.254 4 C 0.068 3.932 5 C -0.544 4.544 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.031 4.031 14 C -0.114 4.114 15 C -0.035 4.035 16 C -0.086 4.086 17 C -0.056 4.056 18 N -0.085 5.085 19 C 0.147 3.853 20 F -0.102 7.102 21 C -0.219 4.219 22 C 0.172 3.828 23 F -0.080 7.080 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.008 0.992 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.168 0.832 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.519 -7.272 12.552 15.194 hybrid contribution 0.157 1.129 -0.481 1.238 sum 4.675 -6.143 12.071 14.328 Atomic orbital electron populations 1.21729 0.95315 1.00023 1.02997 1.22057 0.96309 0.90741 0.99051 1.62232 1.13768 1.14464 1.34943 1.19810 0.96725 0.94322 0.82381 1.21138 1.46372 0.90501 0.96403 0.91686 1.24967 0.95433 0.98888 0.95212 1.69940 1.47613 1.35379 1.01034 0.86591 0.78574 0.85286 0.77147 1.20271 1.21477 1.20154 1.20962 0.91772 1.02745 0.87599 1.20224 1.00172 0.93416 0.97565 1.20896 0.94001 0.94786 0.93803 1.15875 1.09906 0.89148 0.93694 1.25235 0.93624 0.92541 0.94155 1.81239 1.09396 1.11183 1.06731 1.17097 0.98072 0.92368 0.77749 1.91558 1.93158 1.91146 1.34386 1.20956 1.06971 0.96876 0.97056 1.17360 0.92355 0.81561 0.91492 1.91660 1.83015 1.39367 1.93927 0.92440 0.91886 0.93619 0.95735 0.92474 0.99164 0.94211 0.92891 0.88060 0.94072 0.83245 0.82473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.99 37.15 0.37 -1.89 16 2 C 0.05 0.75 5.55 -3.83 -0.02 0.73 16 3 N -0.53 -10.04 4.37 -237.52 -1.04 -11.07 16 4 C 0.19 4.58 4.59 -4.98 -0.02 4.56 16 5 C -0.51 -13.30 8.61 -34.44 -0.30 -13.60 16 6 H 0.06 1.70 7.66 -52.49 -0.40 1.30 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 9 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.10 1.56 4.59 -4.97 -0.02 1.53 16 14 C -0.11 -1.43 4.48 -104.61 -0.47 -1.90 16 15 C -0.01 -0.14 8.36 -39.19 -0.33 -0.47 16 16 C -0.08 -0.86 5.74 -106.78 -0.61 -1.48 16 17 C 0.26 3.11 14.98 -22.47 -0.34 2.78 16 18 N -0.41 -5.69 18.54 41.84 0.78 -4.92 16 19 C 0.17 1.77 7.28 -38.97 -0.28 1.49 16 20 F -0.12 -1.36 16.81 2.25 0.04 -1.32 16 21 C -0.20 -2.05 9.99 -39.50 -0.39 -2.44 16 22 C 0.19 2.47 7.25 -39.30 -0.28 2.18 16 23 F -0.10 -1.59 16.74 2.25 0.04 -1.55 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 1.13 6.52 -51.93 -0.34 0.79 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 28 H 0.06 0.79 6.12 -51.92 -0.32 0.47 16 29 H -0.01 -0.24 8.00 -51.92 -0.42 -0.65 16 30 H 0.04 1.03 6.24 -51.93 -0.32 0.70 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.10 1.81 7.26 -51.93 -0.38 1.44 16 33 H 0.04 0.61 7.92 -51.93 -0.41 0.20 16 34 H 0.15 1.30 7.99 -52.49 -0.42 0.88 16 35 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -28.74 315.88 -6.34 -35.07 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.83 Total: -4.84 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.80 Total: -7.08 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.47 Total: -40.96 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.74 -6.34 -35.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237526686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.789 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds