Wall clock time and date at job start Tue Mar 31 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46895 * 109.47455 * 2 1 4 4 C 1.46895 * 111.00049 * 287.95330 * 3 2 1 5 5 C 1.50702 * 109.47550 * 160.35889 * 4 3 2 6 6 H 1.07999 * 119.99691 * 4.66860 * 5 4 3 7 7 C 1.37878 * 120.00313 * 184.67190 * 5 4 3 8 8 N 1.31517 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99966 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47419 * 60.00009 * 9 7 5 11 11 H 1.48507 * 109.46890 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47076 * 299.99946 * 9 7 5 13 13 C 1.46899 * 111.00352 * 163.99766 * 3 2 1 14 14 C 1.50704 * 109.47257 * 293.95495 * 13 3 2 15 15 C 1.37812 * 119.90599 * 104.99676 * 14 13 3 16 16 C 1.39699 * 119.89945 * 180.02562 * 15 14 13 17 17 C 1.43200 * 120.14503 * 180.02562 * 16 15 14 18 18 N 6.17311 * 126.52548 * 126.68322 * 2 1 3 19 19 C 1.39965 * 119.71287 * 359.97438 * 16 15 14 20 20 F 1.35100 * 120.10277 * 179.97438 * 19 16 15 21 21 C 1.38142 * 119.80341 * 0.02562 * 19 16 15 22 22 C 1.38543 * 120.10267 * 0.26955 * 21 19 16 23 23 F 1.35100 * 119.85736 * 179.70391 * 22 21 19 24 24 H 1.09002 * 109.47361 * 299.29486 * 1 2 3 25 25 H 1.08998 * 109.47316 * 59.29614 * 1 2 3 26 26 H 1.09005 * 109.47641 * 179.29282 * 1 2 3 27 27 H 1.09000 * 109.47391 * 239.99634 * 2 1 3 28 28 H 1.09007 * 109.47225 * 120.00332 * 2 1 3 29 29 H 1.09008 * 109.47119 * 280.35719 * 4 3 2 30 30 H 1.09000 * 109.47296 * 40.35749 * 4 3 2 31 31 H 0.96996 * 119.99794 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47451 * 173.95347 * 13 3 2 33 33 H 1.08996 * 109.47345 * 53.95482 * 13 3 2 34 34 H 1.08002 * 120.04798 * 0.02562 * 15 14 13 35 35 H 1.08001 * 119.94741 * 180.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7966 2.0222 -1.3046 5 6 1.8478 3.5201 -1.1474 6 1 2.1025 3.9543 -0.1919 7 6 1.5696 4.3361 -2.2234 8 7 1.2600 3.8073 -3.3871 9 14 1.6324 6.1928 -2.0283 10 1 2.9983 6.6010 -1.6123 11 1 1.2950 6.8382 -3.3225 12 1 0.6533 6.6154 -0.9949 13 6 3.4380 1.4418 0.3781 14 6 3.5934 1.0066 1.8125 15 6 4.1057 -0.2399 2.1007 16 6 4.2492 -0.6434 3.4304 17 6 4.7814 -1.9372 3.7359 18 7 5.2040 -2.9635 3.9782 19 6 3.8716 0.2229 4.4629 20 9 4.0065 -0.1594 5.7516 21 6 3.3594 1.4697 4.1602 22 6 3.2148 1.8594 2.8386 23 9 2.7078 3.0775 2.5482 24 1 -0.3634 0.5028 0.8962 25 1 -0.3634 0.5247 -0.8836 26 1 -0.3634 -1.0276 -0.0127 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.5714 1.7033 -2.0019 30 1 0.8193 1.7304 -1.6892 31 1 1.0646 4.3814 -4.1440 32 1 3.8031 2.4628 0.2665 33 1 4.0130 0.7779 -0.2674 34 1 4.3958 -0.9038 1.2997 35 1 3.0677 2.1401 4.9551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237526686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:49 Heat of formation + Delta-G solvation = -49.133132 kcal Electronic energy + Delta-G solvation = -21345.312146 eV Core-core repulsion = 17785.905232 eV Total energy + Delta-G solvation = -3559.406914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.22147 -49.93326 -40.53331 -38.46046 -37.47402 -34.71813 -33.08850 -32.32794 -31.27299 -28.72424 -26.27303 -25.12939 -24.37489 -23.40676 -21.53524 -19.72518 -19.15742 -18.62906 -18.29040 -17.22406 -16.87405 -16.66516 -16.35453 -15.88621 -15.78996 -15.56849 -15.31817 -15.15368 -14.88142 -14.56869 -14.48175 -14.15826 -13.93730 -13.47033 -13.18912 -13.01200 -12.86917 -12.72014 -12.69226 -12.51390 -12.30430 -12.18055 -12.00742 -11.44841 -11.22775 -10.51795 -10.17003 -9.74283 -8.95019 -8.12169 -6.20087 -0.62278 -0.12847 1.43814 1.45993 1.47977 1.55489 1.61105 2.43783 2.47627 2.54016 2.70670 3.19272 3.21836 3.38092 3.52014 3.62357 3.99616 4.28853 4.35400 4.44645 4.55858 4.64435 4.73576 4.75170 4.79297 4.88429 5.00735 5.09554 5.12073 5.33887 5.36517 5.45555 5.52482 5.75740 6.16651 6.27858 6.42815 6.69342 6.95855 7.48941 8.97793 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.004680 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.828244 B = 5981.658006 C = 6626.698944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.208 3.792 5 C -0.513 4.513 6 H 0.063 0.937 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.099 3.901 14 C -0.120 4.120 15 C 0.005 3.995 16 C -0.073 4.073 17 C 0.279 3.721 18 N -0.442 5.442 19 C 0.180 3.820 20 F -0.123 7.123 21 C -0.181 4.181 22 C 0.179 3.821 23 F -0.124 7.124 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.088 0.912 29 H -0.034 1.034 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.171 0.829 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -6.427 13.801 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 N -0.262 5.262 4 C 0.082 3.918 5 C -0.551 4.551 6 H 0.081 0.919 7 C -0.194 4.194 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.028 4.028 14 C -0.121 4.121 15 C -0.016 4.016 16 C -0.078 4.078 17 C -0.036 4.036 18 N -0.118 5.118 19 C 0.157 3.843 20 F -0.102 7.102 21 C -0.201 4.201 22 C 0.158 3.842 23 F -0.102 7.102 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.106 0.894 29 H -0.016 1.016 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.189 0.811 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.034 -7.681 14.380 17.062 hybrid contribution 0.023 1.184 -0.965 1.527 sum 5.057 -6.497 13.415 15.740 Atomic orbital electron populations 1.21704 0.95232 1.01451 1.01319 1.22164 0.96424 0.89197 1.00412 1.62099 1.16117 1.16295 1.31719 1.19411 0.94425 0.93655 0.84332 1.21464 1.45490 0.92011 0.96174 0.91892 1.25783 0.95240 1.03402 0.94942 1.70064 1.48911 1.36893 1.01786 0.85596 0.78950 0.79968 0.77078 1.19262 1.21300 1.19670 1.20841 0.90001 1.01862 0.90136 1.19871 1.02175 0.94569 0.95517 1.20944 0.92459 0.93841 0.94348 1.15787 1.09763 0.88545 0.93718 1.25263 0.92785 0.92322 0.93231 1.81275 1.10521 1.12219 1.07753 1.17080 0.97363 0.92182 0.77642 1.91574 1.93059 1.91106 1.34428 1.21008 1.05675 0.96919 0.96462 1.17569 0.93096 0.80955 0.92534 1.91609 1.83615 1.40774 1.94181 0.92620 0.94994 0.90608 0.95816 0.89371 1.01631 0.96805 0.92952 0.90617 0.92811 0.81114 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.99 71.98 0.72 -3.58 16 2 C 0.05 1.42 5.55 86.30 0.48 1.90 16 3 N -0.54 -20.41 4.37 -905.38 -3.96 -24.37 16 4 C 0.21 10.23 4.59 85.56 0.39 10.63 16 5 C -0.51 -27.60 8.61 25.60 0.22 -27.38 16 6 H 0.06 3.35 7.66 -2.91 -0.02 3.32 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.94 -54.74 13.29 21.45 0.28 -54.45 16 9 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.10 3.13 4.59 85.56 0.39 3.52 16 14 C -0.12 -2.82 4.48 -19.86 -0.09 -2.91 16 15 C 0.00 0.09 8.36 22.52 0.19 0.28 16 16 C -0.07 -1.32 5.74 -21.26 -0.12 -1.44 16 17 C 0.28 5.90 14.98 88.33 1.32 7.23 16 18 N -0.44 -11.33 18.54 19.00 0.35 -10.98 16 19 C 0.18 3.17 7.28 22.67 0.16 3.33 16 20 F -0.12 -2.31 16.81 44.97 0.76 -1.55 16 21 C -0.18 -3.20 9.99 22.32 0.22 -2.98 16 22 C 0.18 4.26 7.25 22.45 0.16 4.42 16 23 F -0.12 -3.78 16.74 44.97 0.75 -3.03 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.16 6.52 -2.39 -0.02 1.15 16 26 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.02 0.74 8.05 -2.39 -0.02 0.72 16 28 H 0.09 2.18 6.12 -2.38 -0.01 2.17 16 29 H -0.03 -1.80 8.00 -2.38 -0.02 -1.82 16 30 H 0.01 0.75 6.24 -2.39 -0.01 0.74 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.08 2.76 7.26 -2.38 -0.02 2.75 16 33 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 34 H 0.17 2.34 7.99 -2.91 -0.02 2.32 16 35 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -62.96 315.88 5.85 -57.11 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: 1.12 Total: -1.73 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.52 Total: -6.31 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -3.32 Total: -89.81 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.51 Total: -4.58 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.96 5.85 -57.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237526686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.974 kcal (2) G-P(sol) polarization free energy of solvation -62.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds