Wall clock time and date at job start Tue Mar 31 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09007 * 112.85337 * 23.80486 * 7 6 4 9 9 C 1.53787 * 113.61173 * 154.99569 * 7 6 4 10 10 C 1.53788 * 87.07866 * 139.98114 * 9 7 6 11 11 H 1.08996 * 113.61136 * 220.01884 * 10 9 7 12 12 N 1.46502 * 113.61404 * 89.11866 * 10 9 7 13 13 C 1.36936 * 119.99764 * 154.99909 * 12 10 9 14 14 H 1.07998 * 120.00276 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99638 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00198 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47472 * 89.99350 * 17 15 13 19 19 H 1.48497 * 109.47582 * 210.00081 * 17 15 13 20 20 H 1.48501 * 109.46980 * 330.00014 * 17 15 13 21 21 C 1.53777 * 113.61648 * 252.49385 * 7 6 4 22 22 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 23 23 F 1.39898 * 109.47137 * 299.99892 * 22 2 1 24 24 F 1.39898 * 109.47288 * 60.00189 * 22 2 1 25 25 F 1.39903 * 109.47014 * 180.02562 * 22 2 1 26 26 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 28 28 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 29 29 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 30 30 H 1.08997 * 113.61747 * 254.52534 * 9 7 6 31 31 H 1.08999 * 113.61375 * 25.43231 * 9 7 6 32 32 H 0.96998 * 119.99763 * 334.99471 * 12 10 9 33 33 H 0.97007 * 119.99887 * 180.02562 * 16 15 13 34 34 H 1.09004 * 113.61536 * 334.56998 * 21 7 6 35 35 H 1.08994 * 113.61762 * 105.46938 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 1 3.0913 -1.5257 3.4675 9 6 2.2707 -0.0464 4.8937 10 6 1.7328 -1.2407 5.6995 11 1 1.0077 -0.9608 6.4636 12 7 2.7831 -2.1268 6.2074 13 6 2.5529 -2.8959 7.3167 14 1 1.5972 -2.8490 7.8175 15 6 3.5479 -3.7358 7.7976 16 7 4.7125 -3.7934 7.1870 17 14 3.2337 -4.7855 9.3104 18 1 2.6728 -6.0964 8.8956 19 1 4.5105 -5.0011 10.0374 20 1 2.2678 -4.0935 10.2012 21 6 1.0907 -1.7330 4.3917 22 6 2.0399 -0.7212 -1.2494 23 9 1.5736 -2.0401 -1.2494 24 9 1.5736 -0.0616 -2.3916 25 9 3.4390 -0.7217 -1.2491 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.1445 0.5353 2.5435 30 1 3.2893 0.2361 5.1593 31 1 1.5886 0.8034 4.8646 32 1 3.6416 -2.1687 5.7578 33 1 5.4077 -4.3806 7.5229 34 1 0.0859 -1.3443 4.2254 35 1 1.1567 -2.8119 4.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265491453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:16 Heat of formation + Delta-G solvation = -163.229277 kcal Electronic energy + Delta-G solvation = -22271.573768 eV Core-core repulsion = 18276.450049 eV Total energy + Delta-G solvation = -3995.123719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.19644 -47.72839 -47.58177 -40.13286 -38.18837 -34.53536 -33.93250 -32.49532 -29.71434 -26.72451 -25.17632 -25.00071 -23.62276 -22.41640 -20.56634 -19.17300 -18.70023 -18.48850 -17.64520 -17.34791 -16.75021 -15.85653 -15.41639 -14.90827 -14.66029 -14.39897 -14.15161 -14.05154 -13.92691 -13.81471 -13.74363 -13.48116 -13.13718 -12.88816 -12.74687 -12.38535 -12.11436 -12.01520 -11.76341 -11.64421 -10.89269 -10.83152 -10.33322 -10.19533 -10.05976 -9.77687 -9.68632 -8.95774 -8.83904 -7.03654 -5.81190 -3.11737 2.38952 2.43430 2.98599 3.42191 3.46985 3.49007 3.50884 3.82990 3.99277 4.48650 4.53290 4.54298 4.66969 4.98109 5.05153 5.16836 5.20553 5.33249 5.43426 5.57053 5.82791 5.93052 6.01703 6.11124 6.29085 6.51997 6.65032 6.71187 6.95731 7.41583 7.67220 8.08326 8.36709 9.47644 10.03260 10.37047 11.40882 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.003465 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.387207 B = 8079.389405 C = 8412.744496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.165 4.165 3 H 0.137 0.863 4 C 0.516 3.484 5 O -0.516 6.516 6 N -0.708 5.708 7 C 0.124 3.876 8 H 0.116 0.884 9 C -0.164 4.164 10 C 0.172 3.828 11 H 0.069 0.931 12 N -0.705 5.705 13 C -0.248 4.248 14 H 0.073 0.927 15 C -0.010 4.010 16 N -0.929 5.929 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.184 4.184 22 C 0.472 3.528 23 F -0.171 7.171 24 F -0.184 7.184 25 F -0.173 7.173 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.398 0.602 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.070 0.930 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 12.764 -15.675 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 H 0.155 0.845 4 C 0.299 3.701 5 O -0.391 6.391 6 N -0.358 5.358 7 C 0.021 3.979 8 H 0.134 0.866 9 C -0.204 4.204 10 C 0.059 3.941 11 H 0.087 0.913 12 N -0.344 5.344 13 C -0.379 4.379 14 H 0.091 0.909 15 C -0.206 4.206 16 N -0.577 5.577 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.226 4.226 22 C 0.418 3.582 23 F -0.152 7.152 24 F -0.166 7.166 25 F -0.154 7.154 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.232 0.768 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.369 11.905 -15.580 21.732 hybrid contribution -0.009 -0.275 0.348 0.444 sum -9.378 11.630 -15.232 21.336 Atomic orbital electron populations 1.21839 0.89349 1.04878 1.04652 1.22673 1.01306 1.03000 0.91757 0.84473 1.19743 0.80998 0.84929 0.84409 1.90857 1.36800 1.25180 1.86240 1.45994 1.52848 1.31600 1.05341 1.22758 0.99309 0.94964 0.80887 0.86636 1.23913 1.02397 0.98299 0.95761 1.20902 0.91703 0.89485 0.92056 0.91267 1.42200 1.12806 1.47144 1.32211 1.19263 0.98634 1.16771 1.03210 0.90902 1.24785 0.96017 1.00293 0.99535 1.69668 1.04446 1.41767 1.41800 0.86164 0.76889 0.80488 0.82457 1.21607 1.21720 1.20671 1.24332 0.97006 1.01220 1.00055 1.19774 0.76045 0.77979 0.84427 1.93216 1.88260 1.37085 1.96633 1.93172 1.88606 1.80893 1.53895 1.93228 1.29177 1.96348 1.96638 0.90422 0.89723 0.90054 0.76813 0.90728 0.90253 0.77952 0.93316 0.91190 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 2 C -0.16 -1.49 2.71 -91.77 -0.25 -1.74 16 3 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.52 6.85 6.93 -10.98 -0.08 6.77 16 5 O -0.52 -9.54 14.43 5.55 0.08 -9.46 16 6 N -0.71 -8.24 5.24 -53.01 -0.28 -8.52 16 7 C 0.12 1.93 4.12 -67.12 -0.28 1.65 16 8 H 0.12 2.22 7.46 -51.93 -0.39 1.84 16 9 C -0.16 -2.41 7.58 -25.91 -0.20 -2.61 16 10 C 0.17 3.22 4.56 -67.11 -0.31 2.91 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 12 N -0.71 -17.32 5.31 -52.64 -0.28 -17.60 16 13 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 16 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 17 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.18 -3.06 7.68 -25.92 -0.20 -3.26 16 22 C 0.47 5.53 2.42 37.16 0.09 5.62 16 23 F -0.17 -2.38 15.88 2.25 0.04 -2.34 16 24 F -0.18 -1.88 16.80 2.25 0.04 -1.84 16 25 F -0.17 -2.41 16.40 2.25 0.04 -2.37 16 26 H 0.08 0.61 7.80 -51.93 -0.41 0.20 16 27 H 0.08 0.37 7.55 -51.93 -0.39 -0.02 16 28 H 0.08 0.40 7.80 -51.93 -0.41 0.00 16 29 H 0.40 3.08 8.14 -40.82 -0.33 2.75 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 32 H 0.39 10.19 7.90 -40.82 -0.32 9.87 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -33.07 309.88 -5.45 -38.52 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.32 Total: 7.71 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.13 Total: 1.41 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.17 Total: -53.46 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.07 -5.45 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265491453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.714 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds