Wall clock time and date at job start Tue Mar 31 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09007 * 112.85337 * 23.80486 * 7 6 4 9 9 C 1.53787 * 113.61173 * 154.99569 * 7 6 4 10 10 C 1.53788 * 87.07866 * 139.98114 * 9 7 6 11 11 H 1.08996 * 113.61136 * 220.01884 * 10 9 7 12 12 N 1.46502 * 113.61404 * 89.11866 * 10 9 7 13 13 C 1.36936 * 119.99764 * 154.99909 * 12 10 9 14 14 H 1.07998 * 120.00276 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99638 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00198 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00059 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47472 * 89.99350 * 17 15 13 19 19 H 1.48497 * 109.47582 * 210.00081 * 17 15 13 20 20 H 1.48501 * 109.46980 * 330.00014 * 17 15 13 21 21 C 1.53777 * 113.61648 * 252.49385 * 7 6 4 22 22 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 23 23 F 1.39898 * 109.47137 * 299.99892 * 22 2 1 24 24 F 1.39898 * 109.47288 * 60.00189 * 22 2 1 25 25 F 1.39903 * 109.47014 * 180.02562 * 22 2 1 26 26 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 28 28 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 29 29 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 30 30 H 1.08997 * 113.61747 * 254.52534 * 9 7 6 31 31 H 1.08999 * 113.61375 * 25.43231 * 9 7 6 32 32 H 0.96998 * 119.99763 * 334.99471 * 12 10 9 33 33 H 0.97007 * 119.99887 * 180.02562 * 16 15 13 34 34 H 1.09004 * 113.61536 * 334.56998 * 21 7 6 35 35 H 1.08994 * 113.61762 * 105.46938 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 1 3.0913 -1.5257 3.4675 9 6 2.2707 -0.0464 4.8937 10 6 1.7328 -1.2407 5.6995 11 1 1.0077 -0.9608 6.4636 12 7 2.7831 -2.1268 6.2074 13 6 2.5529 -2.8959 7.3167 14 1 1.5972 -2.8490 7.8175 15 6 3.5479 -3.7358 7.7976 16 7 4.7125 -3.7934 7.1870 17 14 3.2337 -4.7855 9.3104 18 1 2.6728 -6.0964 8.8956 19 1 4.5105 -5.0011 10.0374 20 1 2.2678 -4.0935 10.2012 21 6 1.0907 -1.7330 4.3917 22 6 2.0399 -0.7212 -1.2494 23 9 1.5736 -2.0401 -1.2494 24 9 1.5736 -0.0616 -2.3916 25 9 3.4390 -0.7217 -1.2491 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.1445 0.5353 2.5435 30 1 3.2893 0.2361 5.1593 31 1 1.5886 0.8034 4.8646 32 1 3.6416 -2.1687 5.7578 33 1 5.4077 -4.3806 7.5229 34 1 0.0859 -1.3443 4.2254 35 1 1.1567 -2.8119 4.2520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265491453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:16 Heat of formation + Delta-G solvation = -187.426476 kcal Electronic energy + Delta-G solvation = -22272.623037 eV Core-core repulsion = 18276.450049 eV Total energy + Delta-G solvation = -3996.172988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.12931 -48.62894 -48.59175 -41.28412 -39.52734 -35.81196 -35.24705 -33.92137 -31.59817 -27.41194 -26.55996 -26.45416 -25.20177 -23.66578 -21.60561 -20.41950 -19.72915 -19.46729 -19.32995 -18.58508 -17.76938 -17.13453 -16.63839 -16.39104 -15.84764 -15.59005 -15.37630 -15.25556 -15.00868 -14.89184 -14.77285 -14.70607 -14.37738 -14.18099 -13.68351 -13.44994 -13.28060 -13.27221 -12.96526 -12.79997 -12.60429 -12.40158 -12.16857 -11.82245 -11.72026 -11.34331 -10.99510 -10.84995 -10.04901 -9.02758 -7.95784 -5.25446 1.40627 1.47563 1.49759 1.53027 1.58013 2.03002 2.55649 2.65532 3.00017 3.12349 3.36717 3.63012 3.68334 3.81086 3.85786 3.90415 4.01305 4.31649 4.35328 4.66230 4.69950 4.80092 4.85260 5.01700 5.13185 5.15640 5.24254 5.31649 5.50681 5.67163 6.26702 6.43931 7.14768 7.31465 8.08493 8.28722 9.27822 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.003465 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.387207 B = 8079.389405 C = 8412.744496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 H 0.180 0.820 4 C 0.510 3.490 5 O -0.578 6.578 6 N -0.686 5.686 7 C 0.130 3.870 8 H 0.068 0.932 9 C -0.136 4.136 10 C 0.148 3.852 11 H 0.080 0.920 12 N -0.724 5.724 13 C -0.243 4.243 14 H 0.083 0.917 15 C -0.078 4.078 16 N -0.973 5.973 17 Si 0.975 3.025 18 H -0.290 1.290 19 H -0.297 1.297 20 H -0.263 1.263 21 C -0.170 4.170 22 C 0.462 3.538 23 F -0.190 7.190 24 F -0.174 7.174 25 F -0.191 7.191 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.423 0.577 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.111 0.889 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 15.442 -15.759 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 H 0.197 0.803 4 C 0.296 3.704 5 O -0.457 6.457 6 N -0.338 5.338 7 C 0.025 3.975 8 H 0.087 0.913 9 C -0.175 4.175 10 C 0.037 3.963 11 H 0.098 0.902 12 N -0.362 5.362 13 C -0.375 4.375 14 H 0.101 0.899 15 C -0.270 4.270 16 N -0.623 5.623 17 Si 0.804 3.196 18 H -0.218 1.218 19 H -0.224 1.224 20 H -0.188 1.188 21 C -0.212 4.212 22 C 0.408 3.592 23 F -0.171 7.171 24 F -0.155 7.155 25 F -0.173 7.173 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.129 0.871 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.138 14.667 -15.675 24.661 hybrid contribution 0.746 -1.052 0.278 1.319 sum -11.392 13.615 -15.397 23.499 Atomic orbital electron populations 1.21958 0.86773 1.04552 1.07241 1.22730 1.03070 1.03643 0.87624 0.80319 1.20494 0.79860 0.84226 0.85824 1.90846 1.39557 1.28099 1.87171 1.45663 1.52537 1.31854 1.03764 1.22256 0.97294 0.95155 0.82831 0.91333 1.23749 1.02678 0.98032 0.93037 1.21281 0.91145 0.90628 0.93243 0.90175 1.42415 1.13673 1.48252 1.31863 1.19731 0.98555 1.15904 1.03323 0.89873 1.25626 0.96087 1.02412 1.02886 1.69841 1.05490 1.43207 1.43790 0.85115 0.76612 0.78652 0.79233 1.21780 1.22407 1.18759 1.24191 0.99309 0.99012 0.98666 1.20283 0.75300 0.77635 0.85988 1.93178 1.88359 1.38765 1.96802 1.93188 1.88318 1.80431 1.53550 1.93191 1.30870 1.96393 1.96807 0.92224 0.86731 0.87893 0.73758 0.92114 0.85057 0.79753 0.94094 0.87052 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.84 71.98 0.64 -0.66 16 2 C -0.15 -2.25 2.71 -11.54 -0.03 -2.28 16 3 H 0.18 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.51 12.81 6.93 87.66 0.61 13.42 16 5 O -0.58 -21.99 14.43 -3.04 -0.04 -22.04 16 6 N -0.69 -14.00 5.24 -440.03 -2.31 -16.31 16 7 C 0.13 3.90 4.12 45.52 0.19 4.08 16 8 H 0.07 2.78 7.46 -2.38 -0.02 2.76 16 9 C -0.14 -3.63 7.58 31.12 0.24 -3.40 16 10 C 0.15 5.33 4.56 45.52 0.21 5.54 16 11 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 12 N -0.72 -36.26 5.31 -320.44 -1.70 -37.96 16 13 C -0.24 -13.42 9.97 84.03 0.84 -12.59 16 14 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 15 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 16 N -0.97 -60.94 13.06 21.65 0.28 -60.65 16 17 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 C -0.17 -5.42 7.68 31.12 0.24 -5.18 16 22 C 0.46 10.31 2.42 71.98 0.17 10.48 16 23 F -0.19 -5.32 15.88 44.97 0.71 -4.61 16 24 F -0.17 -3.19 16.80 44.97 0.76 -2.43 16 25 F -0.19 -5.34 16.40 44.97 0.74 -4.60 16 26 H 0.06 0.78 7.80 -2.38 -0.02 0.76 16 27 H 0.11 0.34 7.55 -2.38 -0.02 0.33 16 28 H 0.10 0.53 7.80 -2.38 -0.02 0.51 16 29 H 0.42 4.29 8.14 -92.71 -0.75 3.54 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.13 2.20 8.12 -2.39 -0.02 2.18 16 32 H 0.37 20.49 7.90 -92.71 -0.73 19.75 16 33 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 34 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -77.83 309.88 3.68 -74.15 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.35 Total: 20.76 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 3.56 Total: 5.36 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -3.73 Total: -114.93 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.04 Total: -22.04 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 2.21 Total: -11.65 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.83 3.68 -74.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265491453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.276 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds