Wall clock time and date at job start Tue Mar 31 2020 02:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47106 * 2 1 4 4 C 1.46497 * 120.00366 * 275.60357 * 3 2 1 5 5 C 1.50697 * 109.46812 * 269.99474 * 4 3 2 6 6 H 1.08004 * 120.00418 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00093 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00253 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47374 * 119.99720 * 9 7 5 12 12 H 1.48499 * 109.47505 * 240.00198 * 9 7 5 13 13 C 1.34783 * 119.99536 * 95.59523 * 3 2 1 14 14 O 1.21615 * 119.99499 * 185.29945 * 13 3 2 15 15 C 1.47372 * 120.00196 * 5.30180 * 13 3 2 16 16 C 1.47022 * 127.19314 * 49.66116 * 15 13 3 17 17 C 1.34180 * 105.95418 * 179.97438 * 16 15 13 18 18 O 1.34215 * 109.12571 * 0.27263 * 17 16 15 19 19 C 1.33654 * 110.90593 * 359.53913 * 18 17 16 20 20 C 1.50698 * 125.80034 * 180.14598 * 19 18 17 21 21 C 1.50702 * 109.47454 * 270.35441 * 20 19 18 22 22 N 1.34781 * 120.00134 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99827 * 0.02562 * 21 20 19 24 24 H 1.09005 * 109.46510 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46940 * 299.98995 * 1 2 3 26 26 H 1.08998 * 109.47290 * 60.00250 * 1 2 3 27 27 H 1.09002 * 109.47236 * 240.00353 * 2 1 3 28 28 H 1.08995 * 109.47703 * 120.00383 * 2 1 3 29 29 H 1.09001 * 109.46965 * 29.99097 * 4 3 2 30 30 H 1.09000 * 109.47436 * 149.99502 * 4 3 2 31 31 H 0.96996 * 120.00259 * 180.02562 * 8 7 5 32 32 H 1.07994 * 127.02443 * 359.96751 * 16 15 13 33 33 H 1.07997 * 125.43972 * 179.97438 * 17 16 15 34 34 H 1.08994 * 109.47495 * 30.36127 * 20 19 18 35 35 H 1.09008 * 109.47237 * 150.35664 * 20 19 18 36 36 H 0.96997 * 119.99999 * 0.02562 * 22 21 20 37 37 H 0.96996 * 119.99600 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1457 2.1132 -1.2626 5 6 3.5226 1.8929 -1.8341 6 1 4.2317 1.2696 -1.3096 7 6 3.8768 2.4862 -3.0273 8 7 3.0129 3.2439 -3.6668 9 14 5.5837 2.2137 -3.7354 10 1 6.3593 1.3275 -2.8308 11 1 5.4693 1.5774 -5.0723 12 1 6.2796 3.5191 -3.8664 13 6 2.3502 1.9786 1.1617 14 8 2.6632 3.1537 1.1735 15 6 2.3339 1.2078 2.4177 16 6 2.9577 -0.1002 2.6659 17 6 2.6813 -0.4042 3.9433 18 8 1.9514 0.5846 4.4826 19 6 1.7372 1.5590 3.5931 20 6 0.9618 2.8266 3.8439 21 6 -0.4913 2.6001 3.5148 22 7 -1.3802 3.6022 3.6643 23 8 -0.8610 1.5160 3.1165 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3974 1.7529 -1.9685 30 1 1.9930 3.1774 -1.0827 31 1 3.2619 3.6610 -4.5064 32 1 3.5228 -0.6949 1.9636 33 1 2.9921 -1.3034 4.4543 34 1 1.0572 3.1096 4.8921 35 1 1.3567 3.6245 3.2148 36 1 -1.0846 4.4692 3.9833 37 1 -2.3155 3.4562 3.4529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321832839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:00 Heat of formation + Delta-G solvation = -59.619183 kcal Electronic energy + Delta-G solvation = -22512.428774 eV Core-core repulsion = 19063.654667 eV Total energy + Delta-G solvation = -3448.774107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38262 -39.35684 -38.67346 -35.19232 -33.77746 -33.05794 -32.42740 -31.88112 -29.90316 -27.84540 -26.75461 -23.70167 -22.94417 -21.60079 -21.43772 -20.29644 -18.49463 -17.49439 -17.00502 -16.82099 -16.34057 -15.86497 -15.52148 -15.31660 -15.10046 -14.31612 -14.21943 -13.78007 -13.60609 -13.11949 -12.96656 -12.64838 -12.59651 -12.15496 -11.86923 -11.62001 -11.45133 -11.16906 -10.81816 -10.57949 -10.48130 -10.13743 -10.08679 -9.78059 -9.57682 -9.42238 -8.97814 -8.42834 -8.38518 -7.56690 -6.01454 -4.06089 1.72086 2.39837 2.56439 2.89813 3.31577 3.38682 3.43046 3.49477 3.69657 4.09126 4.47507 4.52779 4.85982 4.98169 5.10649 5.25296 5.32513 5.43442 5.60278 5.74034 5.82115 5.92755 6.06545 6.15993 6.32183 6.45922 6.49986 6.64193 6.80850 7.12204 7.17663 7.24283 7.49479 7.61609 7.95795 8.16480 8.27027 8.49645 8.92640 9.13057 9.58918 11.06583 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.005343 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.805939 B = 5238.803643 C = 5627.982984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.583 5.583 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.578 3.422 14 O -0.547 6.547 15 C -0.193 4.193 16 C -0.185 4.185 17 C -0.037 4.037 18 O -0.176 6.176 19 C 0.053 3.947 20 C -0.069 4.069 21 C 0.521 3.479 22 N -0.855 5.855 23 O -0.527 6.527 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.158 0.842 33 H 0.206 0.794 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.402 0.598 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.346 -3.925 16.593 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.313 5.313 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.365 3.635 14 O -0.427 6.427 15 C -0.197 4.197 16 C -0.205 4.205 17 C -0.103 4.103 18 O -0.072 6.072 19 C 0.000 4.000 20 C -0.108 4.108 21 C 0.305 3.695 22 N -0.419 5.419 23 O -0.402 6.402 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.222 0.778 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.231 0.769 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.366 -3.978 16.421 18.056 hybrid contribution 0.828 0.057 -0.687 1.078 sum -5.538 -3.921 15.734 17.135 Atomic orbital electron populations 1.22172 0.96497 1.01269 1.02673 1.21600 0.94023 0.83988 1.02685 1.48094 1.61777 1.13656 1.07728 1.19293 0.96871 0.93007 0.78183 1.21487 0.98740 1.30224 1.05892 0.92387 1.24934 0.97474 0.94955 0.96757 1.69947 1.34781 1.32098 1.16588 0.86441 0.84221 0.78026 0.78719 1.19799 1.20978 1.20883 1.17218 0.77804 0.86098 0.82401 1.90726 1.49571 1.15883 1.86501 1.21431 1.05761 0.97139 0.95384 1.22837 1.04871 0.95953 0.96824 1.23746 0.98881 0.93355 0.94315 1.83645 1.57590 1.25732 1.40254 1.21357 1.00653 0.90564 0.87376 1.20222 0.91013 0.93709 1.05882 1.20361 0.87867 0.84307 0.76974 1.43746 1.11891 1.15060 1.71207 1.90772 1.80240 1.24693 1.44537 0.92616 0.91834 0.92637 0.90633 0.90590 0.94901 0.93789 0.92808 0.82483 0.77765 0.86761 0.84443 0.76932 0.76613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.23 37.16 0.38 -2.56 16 2 C 0.10 1.91 6.08 -4.04 -0.02 1.88 16 3 N -0.58 -13.43 2.46 -176.35 -0.43 -13.86 16 4 C 0.25 6.68 5.22 -5.20 -0.03 6.66 16 5 C -0.52 -15.23 9.39 -34.44 -0.32 -15.55 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.58 13.18 7.32 -12.54 -0.09 13.09 16 14 O -0.55 -14.12 15.67 5.26 0.08 -14.04 16 15 C -0.19 -3.57 5.27 -103.28 -0.54 -4.11 16 16 C -0.19 -2.82 8.94 -37.45 -0.33 -3.15 16 17 C -0.04 -0.46 12.03 29.30 0.35 -0.11 16 18 O -0.18 -2.54 10.52 7.65 0.08 -2.46 16 19 C 0.05 0.84 5.87 -34.96 -0.21 0.64 16 20 C -0.07 -0.88 6.05 -29.03 -0.18 -1.05 16 21 C 0.52 6.98 8.09 -10.98 -0.09 6.89 16 22 N -0.85 -7.45 8.87 31.22 0.28 -7.17 16 23 O -0.53 -9.25 15.92 5.56 0.09 -9.16 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.21 7.17 -51.93 -0.37 0.83 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.08 1.29 4.32 -51.93 -0.22 1.07 16 29 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.04 1.33 7.35 -51.93 -0.38 0.95 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.16 2.17 7.63 -52.49 -0.40 1.77 16 33 H 0.21 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.14 1.87 7.07 -51.92 -0.37 1.50 16 36 H 0.40 2.18 8.83 -40.82 -0.36 1.82 16 37 H 0.40 3.12 8.93 -40.82 -0.36 2.75 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -37.53 323.65 -5.04 -42.57 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.55 Total: 4.06 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.18 Total: 4.28 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.58 Total: -47.25 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: 0.25 Total: -25.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.53 -5.04 -42.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321832839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.045 kcal (2) G-P(sol) polarization free energy of solvation -37.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds