Wall clock time and date at job start Tue Mar 31 2020 02:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47106 * 2 1 4 4 C 1.46497 * 120.00366 * 275.60357 * 3 2 1 5 5 C 1.50697 * 109.46812 * 269.99474 * 4 3 2 6 6 H 1.08004 * 120.00418 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00093 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00253 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47320 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47374 * 119.99720 * 9 7 5 12 12 H 1.48499 * 109.47505 * 240.00198 * 9 7 5 13 13 C 1.34783 * 119.99536 * 95.59523 * 3 2 1 14 14 O 1.21615 * 119.99499 * 185.29945 * 13 3 2 15 15 C 1.47372 * 120.00196 * 5.30180 * 13 3 2 16 16 C 1.47022 * 127.19314 * 49.66116 * 15 13 3 17 17 C 1.34180 * 105.95418 * 179.97438 * 16 15 13 18 18 O 1.34215 * 109.12571 * 0.27263 * 17 16 15 19 19 C 1.33654 * 110.90593 * 359.53913 * 18 17 16 20 20 C 1.50698 * 125.80034 * 180.14598 * 19 18 17 21 21 C 1.50702 * 109.47454 * 270.35441 * 20 19 18 22 22 N 1.34781 * 120.00134 * 179.97438 * 21 20 19 23 23 O 1.21278 * 119.99827 * 0.02562 * 21 20 19 24 24 H 1.09005 * 109.46510 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46940 * 299.98995 * 1 2 3 26 26 H 1.08998 * 109.47290 * 60.00250 * 1 2 3 27 27 H 1.09002 * 109.47236 * 240.00353 * 2 1 3 28 28 H 1.08995 * 109.47703 * 120.00383 * 2 1 3 29 29 H 1.09001 * 109.46965 * 29.99097 * 4 3 2 30 30 H 1.09000 * 109.47436 * 149.99502 * 4 3 2 31 31 H 0.96996 * 120.00259 * 180.02562 * 8 7 5 32 32 H 1.07994 * 127.02443 * 359.96751 * 16 15 13 33 33 H 1.07997 * 125.43972 * 179.97438 * 17 16 15 34 34 H 1.08994 * 109.47495 * 30.36127 * 20 19 18 35 35 H 1.09008 * 109.47237 * 150.35664 * 20 19 18 36 36 H 0.96997 * 119.99999 * 0.02562 * 22 21 20 37 37 H 0.96996 * 119.99600 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1457 2.1132 -1.2626 5 6 3.5226 1.8929 -1.8341 6 1 4.2317 1.2696 -1.3096 7 6 3.8768 2.4862 -3.0273 8 7 3.0129 3.2439 -3.6668 9 14 5.5837 2.2137 -3.7354 10 1 6.3593 1.3275 -2.8308 11 1 5.4693 1.5774 -5.0723 12 1 6.2796 3.5191 -3.8664 13 6 2.3502 1.9786 1.1617 14 8 2.6632 3.1537 1.1735 15 6 2.3339 1.2078 2.4177 16 6 2.9577 -0.1002 2.6659 17 6 2.6813 -0.4042 3.9433 18 8 1.9514 0.5846 4.4826 19 6 1.7372 1.5590 3.5931 20 6 0.9618 2.8266 3.8439 21 6 -0.4913 2.6001 3.5148 22 7 -1.3802 3.6022 3.6643 23 8 -0.8610 1.5160 3.1165 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3974 1.7529 -1.9685 30 1 1.9930 3.1774 -1.0827 31 1 3.2619 3.6610 -4.5064 32 1 3.5228 -0.6949 1.9636 33 1 2.9921 -1.3034 4.4543 34 1 1.0572 3.1096 4.8921 35 1 1.3567 3.6245 3.2148 36 1 -1.0846 4.4692 3.9833 37 1 -2.3155 3.4562 3.4529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321832839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:59 Heat of formation + Delta-G solvation = -88.840525 kcal Electronic energy + Delta-G solvation = -22513.695906 eV Core-core repulsion = 19063.654667 eV Total energy + Delta-G solvation = -3450.041240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.54839 -40.51693 -40.33517 -37.01212 -35.00616 -34.75297 -33.90075 -32.95850 -31.63005 -29.51794 -28.26491 -25.58120 -24.56199 -23.06400 -22.53846 -21.57349 -19.78778 -18.75615 -18.56001 -18.10587 -18.02250 -17.38765 -16.89258 -16.67187 -16.35871 -16.18967 -15.74737 -15.09262 -14.80157 -14.58212 -14.45661 -14.34653 -13.86885 -13.64876 -13.57271 -13.26863 -13.13005 -12.75139 -12.69789 -12.54255 -12.20026 -11.95224 -11.70920 -11.24800 -10.93222 -10.69106 -10.67130 -10.54158 -9.58695 -9.44676 -8.23870 -6.39463 0.48998 1.20986 1.36418 1.38496 1.51065 1.53743 1.80587 2.00639 2.30138 2.46230 2.67810 3.05310 3.47639 3.67258 3.99542 4.03362 4.10529 4.19731 4.34512 4.39312 4.57751 4.63488 4.73287 4.86667 4.93858 5.00514 5.03516 5.18050 5.31772 5.40061 5.55225 5.81774 5.86217 6.03180 6.07241 6.37811 6.66146 6.72809 7.22814 7.27928 7.39317 8.83832 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.005343 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.805939 B = 5238.803643 C = 5627.982984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.972 3.028 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.279 1.279 13 C 0.574 3.426 14 O -0.592 6.592 15 C -0.234 4.234 16 C -0.210 4.210 17 C -0.006 4.006 18 O -0.171 6.171 19 C 0.059 3.941 20 C -0.072 4.072 21 C 0.516 3.484 22 N -0.832 5.832 23 O -0.575 6.575 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.020 0.980 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.166 0.834 33 H 0.260 0.740 34 H 0.160 0.840 35 H 0.125 0.875 36 H 0.420 0.580 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -5.506 18.362 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 N -0.319 5.319 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.796 3.204 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.205 1.205 13 C 0.363 3.637 14 O -0.475 6.475 15 C -0.238 4.238 16 C -0.230 4.230 17 C -0.072 4.072 18 O -0.067 6.067 19 C 0.007 3.993 20 C -0.111 4.111 21 C 0.301 3.699 22 N -0.397 5.397 23 O -0.454 6.454 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.038 0.962 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.184 0.816 33 H 0.275 0.725 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.252 0.748 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.712 -5.547 18.223 19.886 hybrid contribution 0.551 0.586 -1.164 1.415 sum -5.161 -4.961 17.059 18.500 Atomic orbital electron populations 1.22063 0.95360 1.02944 1.01063 1.21833 0.94885 0.81878 1.03795 1.48092 1.62171 1.15035 1.06625 1.18756 0.96100 0.91058 0.79909 1.21701 0.99312 1.30711 1.06513 0.92837 1.25889 1.01925 0.94292 0.96962 1.70064 1.36988 1.32642 1.17082 0.85305 0.78631 0.78127 0.78355 1.19098 1.19347 1.20467 1.17845 0.76370 0.85890 0.83582 1.90672 1.51437 1.18029 1.87392 1.21199 1.09343 0.99132 0.94165 1.22983 1.06330 0.95032 0.98615 1.24696 0.95778 0.93409 0.93300 1.83700 1.57526 1.25742 1.39715 1.21738 0.99564 0.91337 0.86701 1.20358 0.90210 0.92099 1.08413 1.20497 0.88475 0.84368 0.76572 1.43562 1.11734 1.14940 1.69429 1.90747 1.80991 1.26679 1.46986 0.89220 0.93319 0.94247 0.90758 0.88101 0.96204 0.98099 0.92294 0.81620 0.72472 0.82242 0.85760 0.74826 0.75742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 10.23 71.98 0.74 -4.76 16 2 C 0.10 3.76 6.08 86.38 0.53 4.28 16 3 N -0.59 -28.36 2.46 -830.10 -2.04 -30.40 16 4 C 0.26 15.13 5.22 85.63 0.45 15.57 16 5 C -0.54 -32.59 9.39 25.60 0.24 -32.35 16 6 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 9 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 C 0.57 27.24 7.32 86.65 0.63 27.88 16 14 O -0.59 -32.34 15.67 -4.08 -0.06 -32.40 16 15 C -0.23 -8.66 5.27 -18.99 -0.10 -8.76 16 16 C -0.21 -6.01 8.94 23.65 0.21 -5.80 16 17 C -0.01 -0.14 12.03 66.89 0.80 0.67 16 18 O -0.17 -4.43 10.52 4.44 0.05 -4.39 16 19 C 0.06 1.84 5.87 25.26 0.15 1.99 16 20 C -0.07 -1.76 6.05 29.10 0.18 -1.58 16 21 C 0.52 13.50 8.09 87.66 0.71 14.21 16 22 N -0.83 -13.50 8.87 -173.53 -1.54 -15.04 16 23 O -0.57 -20.10 15.92 -3.02 -0.05 -20.15 16 24 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 25 H 0.05 1.87 7.17 -2.39 -0.02 1.85 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.82 8.11 -2.39 -0.02 2.81 16 28 H 0.10 3.36 4.32 -2.39 -0.01 3.35 16 29 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 30 H 0.00 0.06 7.35 -2.39 -0.02 0.04 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.17 4.30 7.63 -2.91 -0.02 4.28 16 33 H 0.26 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.12 3.45 7.07 -2.38 -0.02 3.43 16 36 H 0.42 3.84 8.83 -92.71 -0.82 3.02 16 37 H 0.41 5.88 8.93 -92.71 -0.83 5.05 16 Total: -1.00 -85.90 323.65 3.14 -82.76 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.52 Total: 16.58 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.00 Total: 12.30 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -3.29 Total: -102.43 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.07 Total: -56.94 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -85.90 3.14 -82.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321832839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.076 kcal (2) G-P(sol) polarization free energy of solvation -85.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds