Wall clock time and date at job start Tue Mar 31 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 O 1.42897 * 109.46822 * 119.99785 * 2 1 3 5 5 N 1.41597 * 113.99935 * 155.00035 * 4 2 1 6 6 C 1.34782 * 120.00293 * 179.97438 * 5 4 2 7 7 O 1.21590 * 119.99489 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00281 * 179.97438 * 6 5 4 9 9 C 1.40021 * 120.00015 * 175.49092 * 8 6 5 10 10 C 1.38909 * 120.00118 * 215.12753 * 9 8 6 11 11 C 1.38008 * 119.99873 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.00182 * 0.02562 * 11 10 9 13 13 O 1.35776 * 120.00139 * 179.97438 * 12 11 10 14 14 C 1.34822 * 117.00052 * 5.34095 * 13 12 11 15 15 H 1.08000 * 119.99685 * 354.96408 * 14 13 12 16 16 C 1.38622 * 120.00048 * 174.96175 * 14 13 12 17 17 N 1.31582 * 120.00015 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00312 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47161 * 89.99530 * 18 16 14 20 20 H 1.48494 * 109.47567 * 209.99506 * 18 16 14 21 21 H 1.48499 * 109.47197 * 330.00014 * 18 16 14 22 22 C 1.38909 * 119.99914 * 0.23601 * 12 11 10 23 23 C 1.38011 * 119.99980 * 359.48493 * 22 12 11 24 24 H 1.08998 * 109.47499 * 299.99907 * 1 2 3 25 25 H 1.08997 * 109.46949 * 60.00199 * 1 2 3 26 26 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47271 * 239.99646 * 2 1 3 28 28 H 1.08996 * 109.46925 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47125 * 299.99693 * 3 2 1 30 30 H 1.08998 * 109.46937 * 59.99748 * 3 2 1 31 31 H 0.97002 * 119.99949 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99478 * 355.49615 * 8 6 5 33 33 H 1.07994 * 119.99937 * 0.02562 * 10 9 8 34 34 H 1.07993 * 120.00238 * 180.02562 * 11 10 9 35 35 H 0.96992 * 119.99940 * 180.02562 * 17 16 14 36 36 H 1.08005 * 119.99436 * 179.72430 * 22 12 11 37 37 H 1.08001 * 119.99605 * 180.23164 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 7 3.3036 -1.2232 1.0253 6 6 3.8710 -1.8849 2.0533 7 8 3.2686 -2.0103 3.1021 8 7 5.1056 -2.4084 1.9185 9 6 5.7332 -3.0130 3.0145 10 6 7.1081 -2.9000 3.1769 11 6 7.7267 -3.4964 4.2568 12 6 6.9745 -4.2101 5.1812 13 8 7.5832 -4.7972 6.2434 14 6 8.9003 -4.5578 6.4034 15 1 9.4403 -3.9909 5.6595 16 6 9.5613 -5.0392 7.5228 17 7 10.8466 -4.8050 7.6792 18 14 8.6274 -6.0202 8.8091 19 1 8.6788 -7.4638 8.4644 20 1 9.2480 -5.8071 10.1412 21 1 7.2127 -5.5700 8.8444 22 6 5.6003 -4.3276 5.0159 23 6 4.9809 -3.7264 3.9390 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.7842 -1.1228 0.1888 32 1 5.5593 -2.3663 1.0622 33 1 7.6930 -2.3456 2.4580 34 1 8.7956 -3.4083 4.3833 35 1 11.3092 -5.1422 8.4622 36 1 5.0162 -4.8863 5.7322 37 1 3.9120 -3.8147 3.8126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325346490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:12 Heat of formation + Delta-G solvation = -38.750293 kcal Electronic energy + Delta-G solvation = -20854.788164 eV Core-core repulsion = 17406.919000 eV Total energy + Delta-G solvation = -3447.869164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60142 -40.55032 -39.14790 -38.07554 -35.50798 -34.61118 -34.27644 -31.99584 -31.86533 -29.32417 -28.16467 -27.10261 -23.98322 -23.43631 -22.72990 -21.93969 -20.06298 -19.41738 -19.27645 -19.05073 -17.71839 -16.80462 -16.54905 -16.22326 -15.86108 -15.65383 -15.62528 -15.26830 -15.06667 -14.52302 -14.43414 -14.14738 -14.06328 -13.41985 -13.38088 -13.26282 -13.15398 -12.86657 -12.74905 -12.49772 -12.02899 -11.98614 -11.81665 -11.44904 -11.39815 -11.02378 -10.65693 -9.98852 -9.84169 -8.64627 -8.46848 -6.17550 0.40387 0.52958 0.66712 1.34101 1.37514 1.54386 2.02284 2.30959 2.69264 2.79559 3.06037 3.20773 3.55466 3.84625 3.97993 4.06082 4.14235 4.14779 4.49697 4.55320 4.69354 4.74379 4.81758 4.84422 4.87018 5.06338 5.17568 5.21289 5.26570 5.35232 5.48561 5.56387 5.66976 5.79466 5.91324 6.02362 6.22804 6.88122 6.92799 7.50522 7.63119 8.64367 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.048697 B = 0.002862 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.848913 B = 9782.691735 C =10104.035445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 C -0.176 4.176 4 O -0.153 6.153 5 N -0.595 5.595 6 C 0.714 3.286 7 O -0.609 6.609 8 N -0.650 5.650 9 C 0.091 3.909 10 C -0.079 4.079 11 C -0.213 4.213 12 C 0.114 3.886 13 O -0.245 6.245 14 C -0.396 4.396 15 H 0.089 0.911 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.266 1.266 22 C -0.177 4.177 23 C -0.077 4.077 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.424 0.576 32 H 0.426 0.574 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.284 0.716 36 H 0.126 0.874 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.233 9.658 -21.269 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.012 4.012 3 C -0.233 4.233 4 O -0.157 6.157 5 N -0.301 5.301 6 C 0.415 3.585 7 O -0.487 6.487 8 N -0.303 5.303 9 C -0.003 4.003 10 C -0.100 4.100 11 C -0.233 4.233 12 C 0.065 3.935 13 O -0.153 6.153 14 C -0.472 4.472 15 H 0.106 0.894 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.789 3.211 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.191 1.191 22 C -0.197 4.197 23 C -0.097 4.097 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.268 0.732 32 H 0.265 0.735 33 H 0.176 0.824 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.144 0.856 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.864 9.439 -19.926 27.759 hybrid contribution 0.571 -0.089 -0.148 0.596 sum -16.294 9.350 -20.074 27.493 Atomic orbital electron populations 1.21868 0.90872 1.03399 1.04083 1.23006 0.96531 0.93329 0.88368 1.22357 1.01803 0.95645 1.03512 1.90653 1.14750 1.73637 1.36691 1.45806 1.09506 1.58754 1.16053 1.15500 0.81527 0.78570 0.82917 1.90933 1.63762 1.64924 1.29122 1.41769 1.15382 1.59858 1.13341 1.17105 0.91255 1.00242 0.91725 1.20776 0.92530 0.99150 0.97502 1.21143 1.00664 1.04422 0.97030 1.19596 0.92579 0.93295 0.88058 1.83534 1.24203 1.64497 1.43059 1.20751 0.81211 1.36374 1.08894 0.89401 1.25213 0.96067 0.98309 0.99171 1.69727 1.09217 1.46535 1.30811 0.85280 0.79033 0.79051 0.77782 1.19003 1.19374 1.19072 1.20304 0.90983 1.06799 1.01571 1.20936 1.00175 0.94859 0.93710 0.92419 0.87528 0.91937 0.88098 0.92221 0.88836 0.92974 0.73215 0.73476 0.82371 0.85804 0.90654 0.85622 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.56 71.98 0.69 -0.70 16 2 C 0.05 0.52 3.47 30.60 0.11 0.62 16 3 C -0.18 -1.71 9.56 71.98 0.69 -1.03 16 4 O -0.15 -3.36 10.75 -21.43 -0.23 -3.59 16 5 N -0.60 -11.24 6.38 -184.74 -1.18 -12.42 16 6 C 0.71 19.64 8.55 179.05 1.53 21.17 16 7 O -0.61 -23.66 14.19 13.35 0.19 -23.47 16 8 N -0.65 -14.87 5.34 -317.04 -1.69 -16.56 16 9 C 0.09 2.90 6.30 38.15 0.24 3.14 16 10 C -0.08 -2.56 9.96 22.38 0.22 -2.33 16 11 C -0.21 -8.99 9.16 22.38 0.20 -8.79 16 12 C 0.11 5.42 6.65 22.59 0.15 5.58 16 13 O -0.25 -13.48 8.58 -22.95 -0.20 -13.67 16 14 C -0.40 -23.19 9.94 67.91 0.68 -22.51 16 15 H 0.09 5.27 5.43 -2.91 -0.02 5.25 16 16 C 0.01 0.63 5.49 84.82 0.47 1.09 16 17 N -0.92 -54.90 13.96 21.61 0.30 -54.60 16 18 Si 0.97 46.11 28.62 68.60 1.96 48.07 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 22 C -0.18 -7.44 9.99 22.38 0.22 -7.22 16 23 C -0.08 -2.86 8.69 22.38 0.19 -2.67 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 0.64 7.94 -2.39 -0.02 0.62 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.42 3.82 8.44 -92.71 -0.78 3.03 16 32 H 0.43 5.44 8.84 -92.71 -0.82 4.62 16 33 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16 35 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 37 H 0.14 5.11 6.22 -2.91 -0.02 5.09 16 Total: -1.00 -77.81 322.25 4.06 -73.75 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.48 Total: 16.15 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.39 Total: -13.65 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.57 Total: -83.58 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.24 Total: -40.73 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.96 Total: 48.07 kcal Total: -77.81 4.06 -73.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325346490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.995 kcal (2) G-P(sol) polarization free energy of solvation -77.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds