Wall clock time and date at job start Tue Mar 31 2020 01:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.20833 * 119.99442 * 119.99997 * 12 2 1 14 14 O 1.34225 * 120.00258 * 300.00808 * 12 2 1 15 15 C 1.45198 * 117.00155 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.46847 * 329.99386 * 15 14 12 17 17 C 1.53000 * 109.47291 * 89.99201 * 15 14 12 18 18 C 1.50697 * 109.47395 * 209.99815 * 15 14 12 19 19 N 1.31126 * 126.55556 * 134.99353 * 18 15 14 20 20 C 1.34500 * 105.61590 * 179.97438 * 19 18 15 21 21 C 1.50703 * 126.28596 * 179.97438 * 20 19 18 22 22 C 1.53005 * 117.49516 * 188.62578 * 21 20 19 23 23 C 1.52999 * 117.49511 * 120.00473 * 21 20 19 24 24 N 1.29942 * 107.42433 * 0.02562 * 20 19 18 25 25 O 1.21300 * 110.24983 * 359.69663 * 24 20 19 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47166 * 179.97438 * 17 15 14 31 31 H 1.09001 * 109.47623 * 300.00400 * 17 15 14 32 32 H 1.09003 * 109.47024 * 60.00293 * 17 15 14 33 33 H 1.08995 * 115.54987 * 334.33391 * 21 20 19 34 34 H 1.08993 * 117.49559 * 0.02562 * 22 21 20 35 35 H 1.09001 * 117.49131 * 145.01984 * 22 21 20 36 36 H 1.08996 * 117.49745 * 214.97667 * 23 21 20 37 37 H 1.08998 * 117.49919 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6928 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2268 -0.9865 3.5896 16 1 2.3402 -2.0374 3.3235 17 6 3.5871 -0.4121 3.9903 18 6 1.2684 -0.8617 4.7459 19 7 0.8634 -1.8295 5.5325 20 6 0.0232 -1.2543 6.4112 21 6 -0.7119 -1.9491 7.5283 22 6 -1.7719 -1.1450 8.2838 23 6 -0.4379 -1.4743 8.9568 24 7 -0.0391 0.0104 6.1192 25 8 0.6733 0.2576 5.1691 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7095 1.1620 -3.4843 30 1 3.9763 -0.9633 4.8464 31 1 4.2803 -0.5024 3.1540 32 1 3.4736 0.6388 4.2563 33 1 -0.8984 -3.0124 7.3784 34 1 -1.9379 -0.1138 7.9725 35 1 -2.6562 -1.6795 8.6309 36 1 -0.4445 -2.2254 9.7467 37 1 0.2743 -0.6598 9.0885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327505315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:24 Heat of formation + Delta-G solvation = 3.983750 kcal Electronic energy + Delta-G solvation = -21530.697828 eV Core-core repulsion = 18084.681750 eV Total energy + Delta-G solvation = -3446.016077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.67141 -39.96273 -37.95399 -36.47079 -35.42445 -33.98577 -33.11807 -30.90425 -30.28201 -25.53535 -25.27820 -25.18452 -23.57196 -22.76342 -22.55331 -20.55809 -19.71867 -18.21485 -17.80016 -16.78444 -16.54045 -16.09894 -15.85501 -15.36398 -15.04795 -14.67476 -14.01938 -13.43691 -13.10484 -12.93669 -12.59844 -12.50876 -12.26522 -12.14902 -11.91557 -11.80727 -11.40157 -11.17030 -11.09387 -11.00939 -10.89705 -10.83420 -10.75922 -10.48748 -10.36337 -10.11277 -9.84916 -9.29403 -9.12136 -8.49645 -6.15173 -4.21562 0.97366 1.95706 2.61354 2.92161 3.11466 3.30327 3.33467 3.37704 3.45409 3.53084 4.02570 4.36714 4.43019 4.48298 4.58365 4.79686 4.99367 5.08502 5.18294 5.23947 5.34813 5.39432 5.56027 5.64150 5.67368 5.73491 5.81668 5.95330 6.07120 6.60390 6.77955 6.79932 6.98197 7.35952 7.68431 7.87542 8.05392 8.06950 8.63921 8.86355 9.44431 10.92098 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036312 B = 0.003440 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.900785 B = 8137.146918 C = 8425.494579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.061 3.939 3 H 0.068 0.932 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.470 3.530 13 O -0.508 6.508 14 O -0.354 6.354 15 C 0.174 3.826 16 H 0.128 0.872 17 C -0.165 4.165 18 C 0.199 3.801 19 N -0.470 5.470 20 C 0.198 3.802 21 C -0.078 4.078 22 C -0.158 4.158 23 C -0.157 4.157 24 N -0.383 5.383 25 O 0.096 5.904 26 H 0.032 0.968 27 H 0.024 0.976 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -2.030 18.822 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 H 0.086 0.914 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.393 6.393 14 O -0.272 6.272 15 C 0.116 3.884 16 H 0.145 0.855 17 C -0.223 4.223 18 C -0.022 4.022 19 N -0.205 5.205 20 C -0.074 4.074 21 C -0.098 4.098 22 C -0.196 4.196 23 C -0.195 4.195 24 N -0.089 5.089 25 O 0.037 5.963 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.886 -2.065 19.235 19.437 hybrid contribution 0.424 -0.551 -0.944 1.172 sum -1.463 -2.615 18.291 18.534 Atomic orbital electron populations 1.21766 0.95482 1.00174 1.01941 1.18819 0.94912 0.97130 0.84892 0.91395 1.21081 1.32291 1.13411 0.88650 0.90553 1.24932 0.94808 0.94983 0.99151 1.69866 1.36255 1.22675 1.24113 0.86412 0.79303 0.79671 0.81242 1.20047 1.21196 1.20020 1.25606 0.76453 0.83224 0.83262 1.90520 1.36225 1.26506 1.86075 1.86790 1.70579 1.54985 1.14885 1.20677 0.88086 1.00472 0.79173 0.85498 1.22218 0.94040 1.02489 1.03545 1.28425 0.95673 0.80644 0.97446 1.71815 1.13057 1.29436 1.06204 1.24773 0.97091 0.87342 0.98216 1.20057 1.02462 0.99222 0.88013 1.23090 0.93032 1.01652 1.01829 1.23078 0.99734 1.03550 0.93154 1.74576 1.12864 1.18031 1.03416 1.85356 1.42239 1.35354 1.33366 0.94918 0.95705 0.88360 0.92528 0.90389 0.89372 0.90617 0.84584 0.87714 0.87375 0.87343 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.51 2.74 -92.92 -0.25 1.25 16 3 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 4 C -0.52 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.08 2.14 6.76 -52.49 -0.35 1.79 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.47 10.43 7.22 36.00 0.26 10.69 16 13 O -0.51 -12.00 14.68 -18.76 -0.28 -12.28 16 14 O -0.35 -6.72 9.77 -40.09 -0.39 -7.11 16 15 C 0.17 2.71 3.11 -27.88 -0.09 2.63 16 16 H 0.13 2.05 7.16 -51.93 -0.37 1.67 16 17 C -0.16 -2.06 9.53 37.16 0.35 -1.71 16 18 C 0.20 3.09 7.41 -13.06 -0.10 2.99 16 19 N -0.47 -7.29 11.55 -9.87 -0.11 -7.40 16 20 C 0.20 2.80 7.74 -156.37 -1.21 1.59 16 21 C -0.08 -0.80 6.33 -91.77 -0.58 -1.38 16 22 C -0.16 -1.31 10.14 -26.73 -0.27 -1.58 16 23 C -0.16 -1.24 10.23 -26.73 -0.27 -1.51 16 24 N -0.38 -5.82 11.77 30.90 0.36 -5.46 16 25 O 0.10 1.53 11.31 18.09 0.20 1.73 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.00 7.91 -51.93 -0.41 0.59 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -29.51 325.89 -6.72 -36.23 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.81 Total: -0.37 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.21 Total: -2.59 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.88 Total: -36.53 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.46 Total: -17.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.51 -6.72 -36.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327505315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.215 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds