Wall clock time and date at job start Tue Mar 31 2020 01:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 C 1.50703 * 109.46956 * 240.00171 * 2 1 3 5 5 H 1.08004 * 119.99654 * 240.00142 * 4 2 1 6 6 C 1.37871 * 120.00125 * 59.99906 * 4 2 1 7 7 N 1.31515 * 119.99877 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00001 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47522 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47180 * 120.00117 * 8 6 4 11 11 H 1.48501 * 109.47561 * 240.00044 * 8 6 4 12 12 C 1.50697 * 109.47064 * 120.00229 * 2 1 3 13 13 O 1.21304 * 120.00139 * 120.00203 * 12 2 1 14 14 N 1.34781 * 120.00187 * 299.99939 * 12 2 1 15 15 C 1.40383 * 119.99873 * 175.13941 * 14 12 2 16 16 C 1.40628 * 120.09160 * 57.67281 * 15 14 12 17 17 C 1.36349 * 119.24317 * 179.97438 * 16 15 14 18 18 C 1.40501 * 119.39638 * 359.97438 * 17 16 15 19 19 O 1.22093 * 119.92425 * 180.02562 * 18 17 16 20 20 N 1.34636 * 120.15490 * 0.02562 * 18 17 16 21 21 C 1.46503 * 119.60895 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.47292 * 89.99366 * 21 20 18 23 23 O 1.42905 * 109.47452 * 64.99955 * 22 21 20 24 24 C 1.35883 * 120.08130 * 237.39132 * 15 14 12 25 25 H 1.08997 * 109.47507 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46871 * 300.00026 * 1 2 3 27 27 H 1.08993 * 109.47170 * 59.99873 * 1 2 3 28 28 H 0.97003 * 119.99753 * 180.02562 * 7 6 4 29 29 H 0.96998 * 119.99206 * 355.13432 * 14 12 2 30 30 H 1.08005 * 120.37462 * 0.02562 * 16 15 14 31 31 H 1.07998 * 120.30186 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.46773 * 209.99743 * 21 20 18 33 33 H 1.08997 * 109.46692 * 329.99279 * 21 20 18 34 34 H 1.09001 * 109.47217 * 185.00269 * 22 21 20 35 35 H 1.09001 * 109.47410 * 304.99852 * 22 21 20 36 36 H 0.96700 * 114.00028 * 180.02562 * 23 22 21 37 37 H 1.08009 * 119.70457 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3224 -1.1195 -4.0079 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 6 2.0323 -0.7104 1.2304 13 8 2.7297 -1.6967 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.0883 -0.9681 3.5989 16 6 3.4457 -1.2508 3.8339 17 6 3.7969 -1.9490 4.9512 18 6 2.7971 -2.3707 5.8436 19 8 3.1008 -2.9961 6.8472 20 7 1.5047 -2.0868 5.5947 21 6 0.4720 -2.5318 6.5337 22 6 0.2437 -1.4500 7.5911 23 8 -0.2907 -0.2801 6.9681 24 6 1.1474 -1.3870 4.4853 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7089 1.1614 -3.4844 29 1 1.2088 0.5775 2.5448 30 1 4.2013 -0.9178 3.1378 31 1 4.8343 -2.1751 5.1487 32 1 -0.4568 -2.7132 5.9929 33 1 0.7952 -3.4524 7.0196 34 1 -0.4590 -1.8161 8.3397 35 1 1.1912 -1.2053 8.0712 36 1 -0.4604 0.4489 7.5804 37 1 0.1058 -1.1653 4.3050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330870564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:48 Heat of formation + Delta-G solvation = -85.192306 kcal Electronic energy + Delta-G solvation = -21753.396073 eV Core-core repulsion = 18303.513031 eV Total energy + Delta-G solvation = -3449.883041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37465 -39.13600 -37.36177 -36.72186 -34.88554 -33.80515 -33.13944 -30.57934 -29.99820 -28.23600 -25.18719 -24.48858 -23.72368 -22.83281 -21.57439 -19.56828 -18.18557 -17.66510 -17.37508 -16.59488 -16.27297 -16.09750 -15.70236 -15.39850 -14.52954 -14.45407 -14.13260 -14.02128 -13.73156 -13.31291 -12.84367 -12.73063 -12.56627 -12.17513 -12.07872 -11.64175 -11.41395 -11.06547 -10.77722 -10.71058 -10.51648 -10.33170 -10.08937 -9.99785 -9.87450 -9.09988 -8.99971 -8.77219 -8.40495 -7.57839 -6.07765 -4.11111 0.92893 1.91536 2.53371 3.30280 3.38255 3.46276 3.51344 3.69769 3.76324 3.92946 4.44142 4.54796 4.62612 4.76077 4.92752 4.99634 5.12066 5.23798 5.26150 5.37870 5.41449 5.86689 6.08394 6.11340 6.28519 6.49308 6.56094 6.75931 6.85423 7.03393 7.18192 7.20615 7.40502 7.69451 7.90546 8.05387 8.06279 8.32483 8.98279 9.09159 9.55012 10.99835 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.003916 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.960039 B = 7148.631044 C = 7754.938242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.521 3.479 13 O -0.530 6.530 14 N -0.688 5.688 15 C 0.050 3.950 16 C 0.007 3.993 17 C -0.248 4.248 18 C 0.512 3.488 19 O -0.568 6.568 20 N -0.485 5.485 21 C 0.095 3.905 22 C 0.061 3.939 23 O -0.571 6.571 24 C 0.122 3.878 25 H 0.031 0.969 26 H 0.014 0.986 27 H 0.094 0.906 28 H 0.261 0.739 29 H 0.406 0.594 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.383 0.617 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 0.377 18.054 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.312 3.688 13 O -0.403 6.403 14 N -0.339 5.339 15 C -0.047 4.047 16 C -0.016 4.016 17 C -0.270 4.270 18 C 0.316 3.684 19 O -0.453 6.453 20 N -0.196 5.196 21 C -0.027 4.027 22 C -0.018 4.018 23 O -0.377 6.377 24 C -0.007 4.007 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.242 0.758 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.530 -1.037 17.888 18.263 hybrid contribution -0.082 0.445 -0.367 0.583 sum -3.612 -0.592 17.522 17.900 Atomic orbital electron populations 1.21754 0.96309 0.99929 1.01114 1.18895 0.94280 0.96947 0.88832 0.92678 1.21174 1.31096 1.12883 0.88898 0.90665 1.24937 0.95056 0.95035 0.99140 1.69874 1.37071 1.23045 1.23530 0.86401 0.78651 0.79803 0.82435 1.19535 1.21042 1.21015 1.22277 0.78201 0.84362 0.83966 1.90572 1.36666 1.26758 1.86318 1.43832 1.60117 1.26491 1.03501 1.16851 0.91645 1.04684 0.91544 1.21647 0.95612 0.90363 0.93955 1.21924 1.00181 1.07657 0.97187 1.17140 0.81601 0.81923 0.87754 1.90917 1.80905 1.43885 1.29605 1.45192 1.08877 1.45296 1.20266 1.22028 0.91135 0.98020 0.91525 1.22526 0.98287 0.86386 0.94589 1.86469 1.86443 1.25310 1.39483 1.21802 1.00040 0.92089 0.86765 0.94936 0.96745 0.88731 0.92960 0.75809 0.84485 0.83299 0.88374 0.86767 0.91801 0.92622 0.76941 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.87 37.16 0.33 -2.55 16 2 C 0.03 0.74 2.64 -92.92 -0.24 0.50 16 3 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.08 2.19 6.75 -52.48 -0.35 1.84 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 11.14 7.01 -10.98 -0.08 11.06 16 13 O -0.53 -13.13 14.57 5.54 0.08 -13.05 16 14 N -0.69 -11.13 5.15 -10.01 -0.05 -11.18 16 15 C 0.05 0.76 5.77 -83.88 -0.48 0.28 16 16 C 0.01 0.11 8.91 -39.36 -0.35 -0.24 16 17 C -0.25 -3.70 9.98 -39.41 -0.39 -4.09 16 18 C 0.51 7.94 7.40 -15.47 -0.11 7.82 16 19 O -0.57 -10.05 16.63 4.83 0.08 -9.97 16 20 N -0.48 -6.23 2.57 -119.58 -0.31 -6.54 16 21 C 0.09 0.90 5.77 -4.04 -0.02 0.88 16 22 C 0.06 0.48 7.39 37.15 0.27 0.75 16 23 O -0.57 -4.56 13.10 -35.23 -0.46 -5.02 16 24 C 0.12 1.57 9.66 -16.57 -0.16 1.41 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.24 7.68 -51.93 -0.40 -0.16 16 27 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.41 5.43 8.40 -40.82 -0.34 5.09 16 30 H 0.14 2.16 7.93 -52.48 -0.42 1.75 16 31 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.10 0.76 8.02 -51.93 -0.42 0.34 16 33 H 0.11 1.09 7.38 -51.93 -0.38 0.71 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.38 1.48 9.12 45.56 0.42 1.90 16 37 H 0.16 1.77 8.04 -52.48 -0.42 1.34 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -33.99 319.59 -5.75 -39.74 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -3.88 Total: 5.36 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.63 Total: 3.29 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.27 Total: -41.50 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.30 Total: -28.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.99 -5.75 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330870564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.457 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds