Wall clock time and date at job start Tue Mar 31 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 C 1.50703 * 109.46956 * 240.00171 * 2 1 3 5 5 H 1.08004 * 119.99654 * 240.00142 * 4 2 1 6 6 C 1.37871 * 120.00125 * 59.99906 * 4 2 1 7 7 N 1.31515 * 119.99877 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00001 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47522 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47180 * 120.00117 * 8 6 4 11 11 H 1.48501 * 109.47561 * 240.00044 * 8 6 4 12 12 C 1.50697 * 109.47064 * 120.00229 * 2 1 3 13 13 O 1.21304 * 120.00139 * 120.00203 * 12 2 1 14 14 N 1.34781 * 120.00187 * 299.99939 * 12 2 1 15 15 C 1.40383 * 119.99873 * 175.13941 * 14 12 2 16 16 C 1.40628 * 120.09160 * 57.67281 * 15 14 12 17 17 C 1.36349 * 119.24317 * 179.97438 * 16 15 14 18 18 C 1.40501 * 119.39638 * 359.97438 * 17 16 15 19 19 O 1.22093 * 119.92425 * 180.02562 * 18 17 16 20 20 N 1.34636 * 120.15490 * 0.02562 * 18 17 16 21 21 C 1.46503 * 119.60895 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.47292 * 89.99366 * 21 20 18 23 23 O 1.42905 * 109.47452 * 64.99955 * 22 21 20 24 24 C 1.35883 * 120.08130 * 237.39132 * 15 14 12 25 25 H 1.08997 * 109.47507 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46871 * 300.00026 * 1 2 3 27 27 H 1.08993 * 109.47170 * 59.99873 * 1 2 3 28 28 H 0.97003 * 119.99753 * 180.02562 * 7 6 4 29 29 H 0.96998 * 119.99206 * 355.13432 * 14 12 2 30 30 H 1.08005 * 120.37462 * 0.02562 * 16 15 14 31 31 H 1.07998 * 120.30186 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.46773 * 209.99743 * 21 20 18 33 33 H 1.08997 * 109.46692 * 329.99279 * 21 20 18 34 34 H 1.09001 * 109.47217 * 185.00269 * 22 21 20 35 35 H 1.09001 * 109.47410 * 304.99852 * 22 21 20 36 36 H 0.96700 * 114.00028 * 180.02562 * 23 22 21 37 37 H 1.08009 * 119.70457 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3224 -1.1195 -4.0079 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 6 2.0323 -0.7104 1.2304 13 8 2.7297 -1.6967 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.0883 -0.9681 3.5989 16 6 3.4457 -1.2508 3.8339 17 6 3.7969 -1.9490 4.9512 18 6 2.7971 -2.3707 5.8436 19 8 3.1008 -2.9961 6.8472 20 7 1.5047 -2.0868 5.5947 21 6 0.4720 -2.5318 6.5337 22 6 0.2437 -1.4500 7.5911 23 8 -0.2907 -0.2801 6.9681 24 6 1.1474 -1.3870 4.4853 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7089 1.1614 -3.4844 29 1 1.2088 0.5775 2.5448 30 1 4.2013 -0.9178 3.1378 31 1 4.8343 -2.1751 5.1487 32 1 -0.4568 -2.7132 5.9929 33 1 0.7952 -3.4524 7.0196 34 1 -0.4590 -1.8161 8.3397 35 1 1.1912 -1.2053 8.0712 36 1 -0.4604 0.4489 7.5804 37 1 0.1058 -1.1653 4.3050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330870564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:47 Heat of formation + Delta-G solvation = -110.987148 kcal Electronic energy + Delta-G solvation = -21754.514621 eV Core-core repulsion = 18303.513031 eV Total energy + Delta-G solvation = -3451.001590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.51898 -40.69481 -38.17353 -37.90964 -36.05041 -35.72107 -34.46892 -32.43907 -30.87635 -29.46784 -27.15751 -25.48609 -25.10643 -24.10329 -22.78912 -21.13161 -19.28219 -18.64337 -18.38596 -18.15786 -17.67343 -17.55838 -16.95986 -16.64039 -16.33650 -15.72562 -15.33356 -15.14234 -14.94671 -14.50058 -14.39679 -14.09658 -13.64354 -13.53507 -13.31570 -12.98757 -12.94907 -12.67570 -12.55106 -12.36108 -12.16727 -12.01250 -11.26514 -11.14632 -10.98909 -10.94230 -10.63762 -10.44993 -10.34098 -8.78941 -8.12987 -6.22411 -0.19915 0.67814 1.40941 1.43922 1.47595 1.56919 1.91740 2.34720 2.50937 2.60024 3.17424 3.28836 3.66074 3.70530 3.90667 3.98694 4.13129 4.16172 4.36614 4.49120 4.61940 4.69135 4.78215 4.81664 4.99951 5.00840 5.04986 5.15417 5.35793 5.54768 5.73098 5.80662 5.95320 6.01883 6.25042 6.69893 6.82767 6.87488 6.88787 7.42032 7.53638 8.92668 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030037 B = 0.003916 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.960039 B = 7148.631044 C = 7754.938242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.027 3.973 3 H 0.048 0.952 4 C -0.527 4.527 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.571 6.571 14 N -0.662 5.662 15 C 0.019 3.981 16 C 0.003 3.997 17 C -0.257 4.257 18 C 0.505 3.495 19 O -0.595 6.595 20 N -0.478 5.478 21 C 0.083 3.917 22 C 0.067 3.933 23 O -0.585 6.585 24 C 0.154 3.846 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.264 0.736 29 H 0.422 0.578 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.401 0.599 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 0.768 19.127 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.005 3.995 3 H 0.066 0.934 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.448 6.448 14 N -0.314 5.314 15 C -0.077 4.077 16 C -0.021 4.021 17 C -0.279 4.279 18 C 0.309 3.691 19 O -0.483 6.483 20 N -0.187 5.187 21 C -0.037 4.037 22 C -0.011 4.011 23 O -0.394 6.394 24 C 0.024 3.976 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.261 0.739 30 H 0.145 0.855 31 H 0.173 0.827 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.252 0.748 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.399 -0.594 19.014 19.775 hybrid contribution 0.431 0.351 -0.614 0.828 sum -4.968 -0.243 18.400 19.061 Atomic orbital electron populations 1.21573 0.94625 0.99614 1.02067 1.18818 0.95606 0.96143 0.88885 0.93427 1.21319 1.31476 1.12674 0.91109 0.93359 1.25513 0.95242 0.95711 1.01217 1.69943 1.37229 1.23471 1.24192 0.85617 0.78319 0.78612 0.79764 1.20605 1.20078 1.20138 1.21765 0.77860 0.83616 0.85007 1.90556 1.38613 1.28582 1.87094 1.43289 1.59037 1.26715 1.02323 1.16897 0.92054 1.06871 0.91927 1.21607 0.95909 0.90625 0.93913 1.21986 1.00790 1.07952 0.97178 1.17207 0.82588 0.81853 0.87426 1.90897 1.81542 1.45227 1.30605 1.45338 1.08950 1.43981 1.20471 1.22419 0.90902 0.98691 0.91706 1.22434 0.98345 0.86081 0.94234 1.86400 1.86331 1.25993 1.40710 1.22098 1.00803 0.89416 0.85295 0.95744 0.92270 0.91204 0.92646 0.73889 0.85516 0.82717 0.85805 0.86980 0.88707 0.94434 0.74839 0.78797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.87 71.98 0.64 -4.42 16 2 C 0.03 1.25 2.64 -12.29 -0.03 1.22 16 3 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.53 -29.38 8.37 25.60 0.21 -29.17 16 5 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -49.28 11.32 21.45 0.24 -49.04 16 8 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.53 22.36 7.01 87.66 0.61 22.98 16 13 O -0.57 -28.80 14.57 -3.11 -0.05 -28.84 16 14 N -0.66 -20.28 5.15 -303.96 -1.57 -21.85 16 15 C 0.02 0.55 5.77 37.81 0.22 0.77 16 16 C 0.00 0.09 8.91 22.41 0.20 0.29 16 17 C -0.26 -7.67 9.98 22.38 0.22 -7.45 16 18 C 0.50 15.24 7.40 84.82 0.63 15.86 16 19 O -0.60 -20.82 16.63 -5.62 -0.09 -20.91 16 20 N -0.48 -11.23 2.57 -650.37 -1.67 -12.91 16 21 C 0.08 1.34 5.77 86.38 0.50 1.84 16 22 C 0.07 0.85 7.39 71.98 0.53 1.38 16 23 O -0.59 -7.23 13.10 -148.98 -1.95 -9.18 16 24 C 0.15 3.52 9.66 83.51 0.81 4.33 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.89 7.68 -2.38 -0.02 1.87 16 27 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 28 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.42 10.10 8.40 -92.71 -0.78 9.32 16 30 H 0.13 4.12 7.93 -2.91 -0.02 4.10 16 31 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 32 H 0.12 1.39 8.02 -2.39 -0.02 1.37 16 33 H 0.11 1.91 7.38 -2.39 -0.02 1.89 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.40 1.75 9.12 -74.06 -0.68 1.08 16 37 H 0.20 3.27 8.04 -2.91 -0.02 3.25 16 Total: -1.00 -74.19 319.59 1.59 -72.60 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.34 Total: 14.81 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.99 Total: 9.31 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.00 Total: -83.80 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -2.09 Total: -58.94 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -74.19 1.59 -72.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330870564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.388 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds