Wall clock time and date at job start Tue Mar 31 2020 01:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47091 * 2 1 4 4 C 1.50704 * 109.47216 * 119.99942 * 2 1 3 5 5 H 1.07994 * 119.99866 * 120.00491 * 4 2 1 6 6 C 1.37878 * 119.99809 * 300.00406 * 4 2 1 7 7 N 1.31513 * 120.00154 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99657 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47390 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46845 * 119.99982 * 8 6 4 11 11 H 1.48500 * 109.47086 * 239.99737 * 8 6 4 12 12 C 1.50700 * 109.47251 * 239.99985 * 2 1 3 13 13 O 1.21289 * 120.00135 * 239.99636 * 12 2 1 14 14 N 1.34780 * 119.99730 * 59.99817 * 12 2 1 15 15 C 1.40389 * 119.99880 * 184.85672 * 14 12 2 16 16 C 1.40624 * 120.08851 * 302.56327 * 15 14 12 17 17 C 1.36347 * 119.24369 * 180.02562 * 16 15 14 18 18 C 1.40498 * 119.39685 * 359.75272 * 17 16 15 19 19 O 1.22098 * 119.92896 * 180.27395 * 18 17 16 20 20 N 1.34632 * 120.15185 * 0.49834 * 18 17 16 21 21 C 1.46507 * 119.60647 * 179.77545 * 20 18 17 22 22 C 1.52997 * 109.47242 * 269.72472 * 21 20 18 23 23 O 1.42904 * 109.47055 * 64.99930 * 22 21 20 24 24 C 1.35887 * 120.08231 * 122.58358 * 15 14 12 25 25 H 1.09002 * 109.47615 * 299.99734 * 1 2 3 26 26 H 1.09004 * 109.47448 * 60.00173 * 1 2 3 27 27 H 1.09005 * 109.47091 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99970 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00341 * 4.86279 * 14 12 2 30 30 H 1.08007 * 120.37949 * 0.03785 * 16 15 14 31 31 H 1.08003 * 120.30229 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46621 * 149.72794 * 21 20 18 33 33 H 1.08990 * 109.47400 * 29.72655 * 21 20 18 34 34 H 1.09002 * 109.47210 * 305.00417 * 22 21 20 35 35 H 1.08998 * 109.47641 * 185.00431 * 22 21 20 36 36 H 0.96703 * 113.99599 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.70379 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1465 -0.1873 4.8165 11 1 1.1660 -1.5867 4.8160 12 6 2.0323 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 2.0883 -0.9679 -3.5990 16 6 3.4453 -1.2546 -3.8315 17 6 3.7967 -1.9526 -4.9488 18 6 2.7969 -2.3750 -5.8409 19 8 3.1002 -3.0050 -6.8419 20 7 1.5055 -2.0828 -5.5970 21 6 0.4732 -2.5249 -6.5379 22 6 0.2494 -1.4421 -7.5954 23 8 1.4347 -1.2894 -8.3790 24 6 1.1474 -1.3872 -4.4852 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7087 1.1613 3.4844 29 1 1.2087 0.5776 -2.5449 30 1 4.2005 -0.9258 -3.1328 31 1 4.8338 -2.1825 -5.1440 32 1 -0.4571 -2.7039 -5.9988 33 1 0.7947 -3.4461 -7.0236 34 1 0.0144 -0.4977 -7.1045 35 1 -0.5789 -1.7314 -8.2422 36 1 1.3650 -0.6173 -9.0708 37 1 0.1059 -1.1660 -4.3047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330870565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:50 Heat of formation + Delta-G solvation = -82.352902 kcal Electronic energy + Delta-G solvation = -21722.164327 eV Core-core repulsion = 18272.404412 eV Total energy + Delta-G solvation = -3449.759915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29963 -39.14355 -37.19469 -36.66711 -34.87478 -33.83108 -33.12856 -30.59729 -29.91875 -28.25099 -25.21344 -24.50779 -23.64615 -22.77209 -21.59552 -19.59453 -17.97081 -17.93689 -17.15798 -16.59740 -16.23134 -16.09408 -15.61700 -15.34558 -14.56619 -14.47114 -14.11743 -13.99074 -13.57381 -13.29717 -12.90853 -12.62752 -12.54776 -12.16928 -11.96938 -11.65872 -11.39496 -11.08647 -10.80502 -10.72923 -10.39226 -10.35696 -10.07107 -10.00395 -9.72934 -9.10648 -9.02130 -8.79535 -8.42559 -7.54797 -6.09889 -4.13246 0.92840 1.98518 2.57791 3.28984 3.37052 3.45115 3.53151 3.70190 3.82668 3.93375 4.42707 4.54485 4.66078 4.76983 4.88707 5.01917 5.11464 5.15008 5.24114 5.35862 5.51308 5.88416 6.09103 6.11719 6.28976 6.51238 6.52149 6.72107 6.82141 7.06666 7.20980 7.35647 7.37498 7.66400 7.87915 8.02701 8.22205 8.29847 8.96314 9.06553 9.53027 10.97704 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.003691 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.158849 B = 7584.280633 C = 8022.476586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.521 3.479 13 O -0.528 6.528 14 N -0.689 5.689 15 C 0.057 3.943 16 C -0.001 4.001 17 C -0.238 4.238 18 C 0.518 3.482 19 O -0.545 6.545 20 N -0.488 5.488 21 C 0.093 3.907 22 C 0.061 3.939 23 O -0.553 6.553 24 C 0.096 3.904 25 H 0.094 0.906 26 H 0.013 0.987 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.405 0.595 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.376 0.624 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 0.888 -17.305 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.312 3.688 13 O -0.401 6.401 14 N -0.341 5.341 15 C -0.041 4.041 16 C -0.024 4.024 17 C -0.260 4.260 18 C 0.320 3.680 19 O -0.426 6.426 20 N -0.201 5.201 21 C -0.029 4.029 22 C -0.018 4.018 23 O -0.358 6.358 24 C -0.032 4.032 25 H 0.113 0.887 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.241 0.759 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.222 0.778 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.238 -0.636 -17.282 17.805 hybrid contribution -0.347 0.605 0.601 0.920 sum -4.585 -0.031 -16.681 17.300 Atomic orbital electron populations 1.21755 0.96339 0.99910 1.01072 1.18898 0.94255 0.96954 0.88852 0.92684 1.21174 1.31120 1.12907 0.88889 0.90648 1.24939 0.95039 0.95027 0.99155 1.69869 1.37059 1.23052 1.23557 0.86397 0.78656 0.79820 0.82410 1.19519 1.21007 1.21027 1.22272 0.78234 0.84379 0.83946 1.90574 1.36555 1.26723 1.86282 1.43850 1.60163 1.26483 1.03572 1.16840 0.91727 1.04225 0.91315 1.21609 0.95547 0.91030 0.94224 1.22006 1.00284 1.06807 0.96923 1.17023 0.81488 0.82045 0.87490 1.90942 1.80491 1.42324 1.28884 1.45187 1.09271 1.45848 1.19810 1.22003 0.91114 0.99534 0.90259 1.22530 0.88154 0.97991 0.93121 1.86750 1.36379 1.62532 1.50118 1.21746 0.99750 0.93866 0.87824 0.88722 0.96824 0.94930 0.92945 0.75902 0.84572 0.83384 0.87799 0.87480 0.93249 0.92098 0.77822 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.87 37.16 0.33 -2.48 16 2 C 0.03 0.73 2.64 -92.92 -0.24 0.49 16 3 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -13.66 8.37 -34.44 -0.29 -13.95 16 5 H 0.08 2.18 6.75 -52.49 -0.35 1.83 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.22 11.32 55.43 0.63 -23.59 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.52 10.95 7.01 -10.98 -0.08 10.88 16 13 O -0.53 -12.98 14.55 5.55 0.08 -12.90 16 14 N -0.69 -10.76 5.15 -10.01 -0.05 -10.81 16 15 C 0.06 0.84 5.78 -83.88 -0.48 0.35 16 16 C 0.00 -0.02 8.91 -39.36 -0.35 -0.37 16 17 C -0.24 -3.66 9.98 -39.41 -0.39 -4.05 16 18 C 0.52 8.38 7.03 -15.47 -0.11 8.27 16 19 O -0.54 -10.36 15.83 -3.18 -0.05 -10.41 16 20 N -0.49 -6.24 2.57 -119.58 -0.31 -6.55 16 21 C 0.09 0.88 5.79 -4.04 -0.02 0.86 16 22 C 0.06 0.47 7.39 37.16 0.27 0.75 16 23 O -0.55 -5.92 12.43 -43.24 -0.54 -6.45 16 24 C 0.10 1.15 10.20 -16.57 -0.17 0.98 16 25 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 26 H 0.01 0.22 7.68 -51.93 -0.40 -0.18 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.40 5.10 8.40 -40.82 -0.34 4.75 16 30 H 0.14 2.16 7.91 -52.48 -0.42 1.75 16 31 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.10 0.62 8.01 -51.93 -0.42 0.21 16 33 H 0.11 1.20 7.37 -51.93 -0.38 0.81 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 2.20 9.12 45.56 0.42 2.62 16 37 H 0.16 1.36 8.04 -52.49 -0.42 0.93 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -35.36 318.27 -5.97 -41.33 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.88 Total: 5.14 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -1.63 Total: 3.22 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.27 Total: -40.95 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.51 Total: -29.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.36 -5.97 -41.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330870565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.022 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds